Wall clock time and date at job start Tue Mar 31 2020 14:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4 10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4 11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 N 1.34775 * 119.99585 * 179.72218 * 14 13 12 17 17 C 1.47424 * 125.65091 * 0.02789 * 16 14 13 18 18 C 1.54908 * 104.83265 * 155.83115 * 17 16 14 19 19 C 1.55155 * 101.58416 * 37.00898 * 18 17 16 20 20 C 1.47025 * 125.64746 * 179.71346 * 16 14 13 21 21 H 1.09008 * 109.88254 * 300.51409 * 20 16 14 22 22 C 1.50696 * 109.88198 * 61.68103 * 20 16 14 23 23 C 1.33392 * 125.20282 * 218.27000 * 22 20 16 24 24 C 1.38428 * 114.91959 * 179.85958 * 23 22 20 25 25 C 1.33388 * 114.91992 * 0.42598 * 24 23 22 26 26 S 1.75881 * 109.59520 * 359.77331 * 25 24 23 27 27 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 28 28 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 29 29 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 32 32 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 33 33 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 34 34 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 35 35 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 36 36 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 37 37 H 1.08999 * 110.36505 * 274.66731 * 17 16 14 38 38 H 1.08999 * 110.37019 * 36.87988 * 17 16 14 39 39 H 1.09003 * 111.00205 * 155.07898 * 18 17 16 40 40 H 1.08999 * 111.00758 * 278.89176 * 18 17 16 41 41 H 1.08997 * 110.72377 * 82.86033 * 19 18 17 42 42 H 1.08996 * 110.72272 * 205.95823 * 19 18 17 43 43 H 1.08004 * 122.53875 * 0.02562 * 23 22 20 44 44 H 1.08004 * 122.53472 * 180.19597 * 24 23 22 45 45 H 1.07998 * 125.19854 * 179.74744 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5808 -1.4763 3.7812 16 7 1.4372 0.1510 4.7699 17 6 0.5861 1.3548 4.7797 18 6 -0.1324 1.3212 6.1517 19 6 0.9833 0.7633 7.0742 20 6 1.7151 -0.2412 6.1594 21 1 1.3437 -1.2498 6.3413 22 6 3.1980 -0.1829 6.4215 23 6 3.8817 -1.0518 7.1677 24 6 5.2390 -0.7971 7.2632 25 6 5.6559 0.2837 6.6019 26 16 4.2906 1.0455 5.7964 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 0.7090 1.1613 -3.4845 34 1 3.1300 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2493 36 1 0.9942 0.7584 2.3564 37 1 1.1981 2.2526 4.6939 38 1 -0.1402 1.3126 3.9681 39 1 -0.4305 2.3230 6.4611 40 1 -0.9913 0.6506 6.1266 41 1 1.6549 1.5604 7.3927 42 1 0.5523 0.2561 7.9374 43 1 3.4123 -1.8920 7.6579 44 1 5.9088 -1.4238 7.8333 45 1 6.6759 0.6370 6.5669 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459227237.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:24 Heat of formation + Delta-G solvation = -10.168601 kcal Electronic energy + Delta-G solvation = -25648.327200 eV Core-core repulsion = 22177.837445 eV Total energy + Delta-G solvation = -3470.489755 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43120 -39.35378 -38.23957 -37.77682 -35.02625 -33.16175 -32.05839 -31.81102 -28.37939 -27.57525 -27.46526 -26.73901 -24.97715 -23.77111 -22.11993 -21.04983 -20.59240 -20.29877 -19.43479 -17.89516 -17.74072 -17.38076 -16.65396 -16.55983 -16.19899 -15.76327 -15.39033 -14.84692 -14.69755 -14.58733 -14.21534 -14.07330 -13.93956 -13.69846 -13.58064 -13.41707 -13.18500 -13.09556 -12.77506 -12.68258 -12.59459 -12.30153 -12.25440 -12.16899 -12.10999 -11.79446 -11.55543 -11.49467 -11.31876 -11.12899 -10.71579 -10.39997 -10.12644 -9.67406 -9.43272 -9.32231 -8.02297 -6.17825 0.09981 0.73635 1.14852 1.42588 1.45103 1.53324 1.63171 1.93407 2.19593 2.46050 3.13539 3.21274 3.59667 3.66481 3.81926 4.15613 4.23109 4.31364 4.41350 4.51358 4.53685 4.62082 4.67982 4.69527 4.74884 4.90133 4.95773 4.97848 5.04325 5.09278 5.10724 5.17883 5.18742 5.30456 5.37202 5.38337 5.38705 5.60244 5.62946 5.66318 5.67089 6.07885 6.13936 6.20960 6.43485 6.85628 7.04710 7.49695 7.62360 8.96837 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018565 B = 0.003361 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.851596 B = 8329.524729 C = 9111.748483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.116 4.116 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.170 3.830 13 N -0.725 5.725 14 C 0.714 3.286 15 O -0.630 6.630 16 N -0.634 5.634 17 C 0.084 3.916 18 C -0.117 4.117 19 C -0.112 4.112 20 C 0.217 3.783 21 H 0.082 0.918 22 C -0.178 4.178 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.228 4.228 26 S 0.078 5.922 27 H 0.034 0.966 28 H 0.064 0.936 29 H 0.017 0.983 30 H 0.015 0.985 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.030 0.970 35 H 0.034 0.966 36 H 0.402 0.598 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.110 0.890 43 H 0.151 0.849 44 H 0.161 0.839 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 4.824 22.730 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.046 3.954 13 N -0.380 5.380 14 C 0.416 3.584 15 O -0.511 6.511 16 N -0.373 5.373 17 C -0.038 4.038 18 C -0.155 4.155 19 C -0.150 4.150 20 C 0.111 3.889 21 H 0.100 0.900 22 C -0.297 4.297 23 C -0.178 4.178 24 C -0.168 4.168 25 C -0.363 4.363 26 S 0.341 5.659 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.239 0.761 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.129 0.871 43 H 0.169 0.831 44 H 0.178 0.822 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.569 5.471 21.637 22.326 hybrid contribution 0.660 -1.644 -0.570 1.861 sum 0.091 3.826 21.068 21.413 Atomic orbital electron populations 1.21631 0.96965 0.98582 1.00252 1.18356 0.93348 0.93003 0.90090 1.21631 0.97760 0.97830 1.00202 1.21242 1.31792 1.12159 0.91557 0.93909 1.25428 0.95112 0.95565 1.00863 1.69898 1.36977 1.23176 1.23628 0.85764 0.78635 0.78531 0.79907 1.20414 1.20679 1.20231 1.21102 0.96419 0.94613 0.83283 1.45226 1.55739 1.33309 1.03765 1.15682 0.79936 0.82287 0.80535 1.90865 1.44542 1.29491 1.86183 1.47740 1.54689 1.30909 1.03914 1.22617 0.93421 0.86850 1.00864 1.22780 0.97162 1.04030 0.91488 1.22742 0.97125 0.97667 0.97441 1.20047 0.87700 1.00472 0.80646 0.90023 1.25044 0.99994 1.00577 1.04062 1.20323 0.94224 1.00765 1.02471 1.20420 0.95789 0.98355 1.02277 1.25899 1.03040 1.02253 1.05123 1.84319 0.99900 1.29415 1.52267 0.94747 0.91721 0.96391 0.96552 0.91709 0.94830 0.92972 0.95112 0.94803 0.76062 0.90974 0.90233 0.86826 0.89561 0.89860 0.87137 0.83136 0.82186 0.80247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.68 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 4 C -0.53 -28.59 8.01 25.60 0.21 -28.38 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.61 5.15 84.65 0.44 2.04 16 7 N -0.90 -48.09 9.35 21.45 0.20 -47.89 16 8 Si 0.94 43.10 29.54 68.60 2.03 45.12 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 12 C 0.17 7.71 4.50 86.38 0.39 8.10 16 13 N -0.72 -27.27 4.92 -478.53 -2.35 -29.62 16 14 C 0.71 26.86 8.28 179.05 1.48 28.34 16 15 O -0.63 -29.07 16.17 -3.98 -0.06 -29.14 16 16 N -0.63 -17.45 2.83 -810.05 -2.29 -19.74 16 17 C 0.08 1.61 6.58 86.85 0.57 2.18 16 18 C -0.12 -1.37 7.08 31.99 0.23 -1.14 16 19 C -0.11 -1.52 6.46 31.78 0.21 -1.31 16 20 C 0.22 5.04 3.28 44.59 0.15 5.18 16 21 H 0.08 2.00 8.13 -2.38 -0.02 1.98 16 22 C -0.18 -4.62 4.55 24.59 0.11 -4.51 16 23 C -0.15 -3.54 10.04 21.22 0.21 -3.32 16 24 C -0.14 -3.07 10.18 21.22 0.22 -2.85 16 25 C -0.23 -5.28 11.23 66.72 0.75 -4.53 16 26 S 0.08 2.07 23.06 -56.49 -1.30 0.76 16 27 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 28 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 29 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 3.24 6.07 -2.38 -0.01 3.23 16 32 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 33 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 34 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.40 13.31 4.64 -92.71 -0.43 12.88 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.49 7.29 -2.39 -0.02 1.47 16 39 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 1.12 7.85 -2.39 -0.02 1.11 16 42 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -67.24 368.34 2.86 -64.38 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: 0.55 Total: 23.26 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 6.09 Total: -7.13 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -4.44 Total: -97.25 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.06 Total: -29.14 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.30 Total: 0.76 kcal Total: -67.24 2.86 -64.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459227237.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.214 kcal (2) G-P(sol) polarization free energy of solvation -67.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds