Wall clock time and date at job start Tue Mar 31 2020 14:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47627 * 2 1 4 4 C 1.50704 * 109.47056 * 240.00090 * 2 1 3 5 5 H 1.07997 * 120.00039 * 237.00847 * 4 2 1 6 6 C 1.37876 * 119.99955 * 57.00674 * 4 2 1 7 7 N 1.31524 * 119.99717 * 5.54395 * 6 4 2 8 8 Si 1.86802 * 120.00355 * 185.54039 * 6 4 2 9 9 H 1.48502 * 109.46592 * 85.00009 * 8 6 4 10 10 H 1.48499 * 109.47254 * 205.00173 * 8 6 4 11 11 H 1.48496 * 109.46967 * 325.00638 * 8 6 4 12 12 C 1.53005 * 109.47218 * 120.00469 * 2 1 3 13 13 N 1.46495 * 109.46766 * 299.99730 * 12 2 1 14 14 C 1.34783 * 119.99766 * 180.02562 * 13 12 2 15 15 O 1.21589 * 119.99671 * 359.72108 * 14 13 12 16 16 N 1.34776 * 120.00079 * 180.02562 * 14 13 12 17 17 C 1.47428 * 125.64602 * 359.75185 * 16 14 13 18 18 C 1.54909 * 104.82738 * 204.09305 * 17 16 14 19 19 C 1.55150 * 101.58175 * 322.98461 * 18 17 16 20 20 C 1.47017 * 125.65050 * 179.43648 * 16 14 13 21 21 H 1.09003 * 109.87738 * 59.56168 * 20 16 14 22 22 C 1.50699 * 109.88527 * 298.39974 * 20 16 14 23 23 C 1.33382 * 125.20677 * 141.45595 * 22 20 16 24 24 C 1.38425 * 114.92476 * 179.97438 * 23 22 20 25 25 C 1.33391 * 114.91868 * 359.97438 * 24 23 22 26 26 S 1.75887 * 125.19780 * 321.14443 * 22 20 16 27 27 H 1.08997 * 109.46920 * 293.93135 * 1 2 3 28 28 H 1.08999 * 109.47206 * 53.92632 * 1 2 3 29 29 H 1.08994 * 109.47487 * 173.93250 * 1 2 3 30 30 H 1.08993 * 109.46990 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.46815 * 300.00585 * 3 2 1 32 32 H 1.09002 * 109.46627 * 59.99865 * 3 2 1 33 33 H 0.96993 * 119.99383 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46845 * 179.97438 * 12 2 1 35 35 H 1.08996 * 109.46930 * 59.99724 * 12 2 1 36 36 H 0.97000 * 120.00224 * 0.02562 * 13 12 2 37 37 H 1.09003 * 110.36235 * 322.92445 * 17 16 14 38 38 H 1.08995 * 110.37250 * 85.24982 * 17 16 14 39 39 H 1.08996 * 111.00774 * 81.06255 * 18 17 16 40 40 H 1.09001 * 110.99972 * 204.91274 * 18 17 16 41 41 H 1.09005 * 110.72266 * 153.86964 * 19 18 17 42 42 H 1.09005 * 110.71982 * 276.96307 * 19 18 17 43 43 H 1.08000 * 122.54044 * 359.97438 * 23 22 20 44 44 H 1.07997 * 122.54429 * 180.02562 * 24 23 22 45 45 H 1.07997 * 125.20445 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6924 -1.5595 -1.1322 6 6 1.6490 -0.2764 -2.4818 7 7 0.9350 0.8210 -2.6070 8 14 2.1440 -1.2469 -3.9993 9 1 1.1617 -2.3360 -4.2324 10 1 2.1706 -0.3436 -5.1776 11 1 3.4930 -1.8327 -3.7939 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4453 14 6 1.8777 -0.4910 3.6695 15 8 2.5729 -1.4823 3.7809 16 7 1.4281 0.1439 4.7700 17 6 0.5803 1.3500 4.7799 18 6 0.8550 2.0164 6.1511 19 6 1.0065 0.7787 7.0742 20 6 1.6964 -0.2551 6.1593 21 1 2.7706 -0.2530 6.3446 22 6 1.1319 -1.6286 6.4162 23 6 1.7133 -2.5726 7.1578 24 6 1.0057 -3.7585 7.2521 25 6 -0.1507 -3.7774 6.5874 26 16 -0.3982 -2.2291 5.7904 27 1 -0.3633 0.4169 0.9393 28 1 -0.3633 0.6051 -0.8306 29 1 -0.3634 -1.0218 -0.1086 30 1 3.1300 1.4423 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.6657 1.1265 -3.4874 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9937 0.7577 2.3564 37 1 0.8647 2.0202 3.9687 38 1 -0.4711 1.0754 4.6954 39 1 1.7757 2.5993 6.1248 40 1 0.0121 2.6342 6.4610 41 1 1.6325 1.0138 7.9350 42 1 0.0303 0.4162 7.3966 43 1 2.6642 -2.4230 7.6476 44 1 1.3624 -4.6042 7.8213 45 1 -0.8326 -4.6140 6.5481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459227238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:28 Heat of formation + Delta-G solvation = 6.113139 kcal Electronic energy + Delta-G solvation = -25650.809365 eV Core-core repulsion = 22181.025639 eV Total energy + Delta-G solvation = -3469.783726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.19198 -38.11708 -37.13850 -36.14516 -33.29320 -31.67238 -31.13689 -30.34953 -27.49760 -25.70331 -25.61150 -24.97532 -23.93346 -22.69019 -21.31481 -19.72693 -19.37269 -18.79934 -18.08325 -16.81852 -16.34769 -15.79127 -15.38694 -14.88889 -14.75340 -14.56361 -14.00279 -13.63064 -13.34208 -13.22419 -13.00072 -12.81505 -12.77747 -12.47024 -12.38966 -12.15311 -11.87514 -11.52892 -11.41408 -11.37120 -11.16219 -11.08156 -10.83927 -10.67021 -10.62885 -10.34984 -10.19118 -9.70981 -9.59347 -9.28590 -8.77696 -8.76675 -8.54873 -8.38204 -8.34788 -8.09988 -6.00320 -4.08668 1.05387 1.70693 2.11021 2.72389 3.01023 3.30880 3.37091 3.41292 3.64849 4.27609 4.37123 4.42283 4.60307 4.63887 4.91331 5.08066 5.14026 5.26963 5.30789 5.48173 5.48917 5.54273 5.60064 5.65013 5.75682 5.94345 6.11630 6.17917 6.32228 6.36595 6.40302 6.51834 6.55789 6.83623 6.85061 6.95546 7.06121 7.14181 7.35867 7.44178 7.58612 7.72904 8.02252 8.14409 8.40234 8.47631 8.90787 9.08759 9.56514 11.01804 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.003379 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.315990 B = 8285.227021 C = 9087.102576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.151 3.849 13 N -0.730 5.730 14 C 0.716 3.284 15 O -0.585 6.585 16 N -0.639 5.639 17 C 0.096 3.904 18 C -0.130 4.130 19 C -0.123 4.123 20 C 0.227 3.773 21 H 0.089 0.911 22 C -0.166 4.166 23 C -0.137 4.137 24 C -0.133 4.133 25 C -0.224 4.224 26 S 0.117 5.883 27 H 0.005 0.995 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.003 0.997 33 H 0.259 0.741 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.393 0.607 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.825 1.473 21.028 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.028 3.972 13 N -0.385 5.385 14 C 0.418 3.582 15 O -0.463 6.463 16 N -0.379 5.379 17 C -0.027 4.027 18 C -0.168 4.168 19 C -0.162 4.162 20 C 0.120 3.880 21 H 0.107 0.893 22 C -0.285 4.285 23 C -0.168 4.168 24 C -0.164 4.164 25 C -0.360 4.360 26 S 0.381 5.619 27 H 0.024 0.976 28 H 0.099 0.901 29 H 0.048 0.952 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.022 0.978 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.228 0.772 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.492 1.388 19.897 20.445 hybrid contribution 1.079 -0.923 -0.104 1.424 sum -3.413 0.464 19.793 20.091 Atomic orbital electron populations 1.21778 0.97733 1.00115 0.98804 1.18363 0.92778 0.92751 0.90567 1.21825 0.98553 0.98347 0.99836 1.20967 1.29269 1.14296 0.89904 0.92436 1.24868 0.95000 0.94774 0.98755 1.69831 1.37943 1.21419 1.23224 0.86603 0.79058 0.79924 0.82383 1.20637 1.21360 1.19966 1.21571 0.97808 0.95465 0.82337 1.45529 1.55579 1.33037 1.04326 1.15579 0.80322 0.82466 0.79829 1.90907 1.43069 1.26916 1.85411 1.47749 1.55575 1.30318 1.04308 1.22291 0.95035 0.86801 0.98597 1.22767 1.02996 0.96967 0.94037 1.22744 1.01656 0.94228 0.97543 1.19713 0.99127 0.87974 0.81183 0.89295 1.24851 0.99192 1.00637 1.03827 1.19976 1.01474 0.92762 1.02553 1.20081 0.95077 0.98856 1.02338 1.25605 1.03027 1.01850 1.05526 1.84276 1.19108 1.07179 1.51361 0.97599 0.90089 0.95210 0.95497 0.89633 0.97769 0.93059 0.93036 0.92959 0.77204 0.90454 0.91577 0.90258 0.89616 0.89563 0.90218 0.84644 0.84667 0.82273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.03 37.15 0.30 -2.59 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16 3 C -0.13 -2.91 8.11 37.16 0.30 -2.61 16 4 C -0.51 -13.43 8.01 -34.44 -0.28 -13.70 16 5 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 6 C 0.07 1.79 5.13 -17.82 -0.09 1.69 16 7 N -0.89 -23.72 9.45 55.43 0.52 -23.19 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -13.80 4.86 -65.23 -0.32 -14.11 16 14 C 0.72 13.47 8.28 -86.91 -0.72 12.75 16 15 O -0.59 -13.24 16.18 5.29 0.09 -13.15 16 16 N -0.64 -9.13 2.83 -170.00 -0.48 -9.61 16 17 C 0.10 1.02 6.57 -2.53 -0.02 1.01 16 18 C -0.13 -0.99 7.09 -24.59 -0.17 -1.16 16 19 C -0.12 -1.02 6.47 -24.90 -0.16 -1.18 16 20 C 0.23 2.78 3.28 -68.10 -0.22 2.56 16 21 H 0.09 1.13 8.13 -51.93 -0.42 0.71 16 22 C -0.17 -2.22 4.56 -36.01 -0.16 -2.38 16 23 C -0.14 -1.72 10.04 -41.21 -0.41 -2.13 16 24 C -0.13 -1.57 10.18 -41.21 -0.42 -1.99 16 25 C -0.22 -2.71 11.23 29.04 0.33 -2.39 16 26 S 0.12 1.57 23.07 -107.50 -2.48 -0.91 16 27 H 0.01 0.10 6.71 -51.93 -0.35 -0.25 16 28 H 0.08 2.02 6.25 -51.93 -0.32 1.69 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 2.14 6.10 -51.93 -0.32 1.83 16 32 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 33 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.39 6.74 4.64 -40.82 -0.19 6.55 16 37 H 0.08 0.82 7.31 -51.93 -0.38 0.44 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.08 0.65 7.84 -51.93 -0.41 0.24 16 43 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 368.45 15.07 5.55 5.55 Total: -1.00 -30.61 368.45 -10.91 -41.51 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.94 Total: 5.56 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.83 Total: -7.56 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.27 Total: -46.91 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: 0.09 Total: -13.15 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 1.57 SS G_CDS: -2.48 Total: -0.91 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.61 -10.91 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459227238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.627 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds