Wall clock time and date at job start Tue Mar 31 2020 14:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47627 * 2 1 4 4 C 1.50704 * 109.47056 * 240.00090 * 2 1 3 5 5 H 1.07997 * 120.00039 * 237.00847 * 4 2 1 6 6 C 1.37876 * 119.99955 * 57.00674 * 4 2 1 7 7 N 1.31524 * 119.99717 * 5.54395 * 6 4 2 8 8 Si 1.86802 * 120.00355 * 185.54039 * 6 4 2 9 9 H 1.48502 * 109.46592 * 85.00009 * 8 6 4 10 10 H 1.48499 * 109.47254 * 205.00173 * 8 6 4 11 11 H 1.48496 * 109.46967 * 325.00638 * 8 6 4 12 12 C 1.53005 * 109.47218 * 120.00469 * 2 1 3 13 13 N 1.46495 * 109.46766 * 299.99730 * 12 2 1 14 14 C 1.34783 * 119.99766 * 180.02562 * 13 12 2 15 15 O 1.21589 * 119.99671 * 359.72108 * 14 13 12 16 16 N 1.34776 * 120.00079 * 180.02562 * 14 13 12 17 17 C 1.47428 * 125.64602 * 359.75185 * 16 14 13 18 18 C 1.54909 * 104.82738 * 204.09305 * 17 16 14 19 19 C 1.55150 * 101.58175 * 322.98461 * 18 17 16 20 20 C 1.47017 * 125.65050 * 179.43648 * 16 14 13 21 21 H 1.09003 * 109.87738 * 59.56168 * 20 16 14 22 22 C 1.50699 * 109.88527 * 298.39974 * 20 16 14 23 23 C 1.33382 * 125.20677 * 141.45595 * 22 20 16 24 24 C 1.38425 * 114.92476 * 179.97438 * 23 22 20 25 25 C 1.33391 * 114.91868 * 359.97438 * 24 23 22 26 26 S 1.75887 * 125.19780 * 321.14443 * 22 20 16 27 27 H 1.08997 * 109.46920 * 293.93135 * 1 2 3 28 28 H 1.08999 * 109.47206 * 53.92632 * 1 2 3 29 29 H 1.08994 * 109.47487 * 173.93250 * 1 2 3 30 30 H 1.08993 * 109.46990 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.46815 * 300.00585 * 3 2 1 32 32 H 1.09002 * 109.46627 * 59.99865 * 3 2 1 33 33 H 0.96993 * 119.99383 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.46845 * 179.97438 * 12 2 1 35 35 H 1.08996 * 109.46930 * 59.99724 * 12 2 1 36 36 H 0.97000 * 120.00224 * 0.02562 * 13 12 2 37 37 H 1.09003 * 110.36235 * 322.92445 * 17 16 14 38 38 H 1.08995 * 110.37250 * 85.24982 * 17 16 14 39 39 H 1.08996 * 111.00774 * 81.06255 * 18 17 16 40 40 H 1.09001 * 110.99972 * 204.91274 * 18 17 16 41 41 H 1.09005 * 110.72266 * 153.86964 * 19 18 17 42 42 H 1.09005 * 110.71982 * 276.96307 * 19 18 17 43 43 H 1.08000 * 122.54044 * 359.97438 * 23 22 20 44 44 H 1.07997 * 122.54429 * 180.02562 * 24 23 22 45 45 H 1.07997 * 125.20445 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6924 -1.5595 -1.1322 6 6 1.6490 -0.2764 -2.4818 7 7 0.9350 0.8210 -2.6070 8 14 2.1440 -1.2469 -3.9993 9 1 1.1617 -2.3360 -4.2324 10 1 2.1706 -0.3436 -5.1776 11 1 3.4930 -1.8327 -3.7939 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0308 2.4453 14 6 1.8777 -0.4910 3.6695 15 8 2.5729 -1.4823 3.7809 16 7 1.4281 0.1439 4.7700 17 6 0.5803 1.3500 4.7799 18 6 0.8550 2.0164 6.1511 19 6 1.0065 0.7787 7.0742 20 6 1.6964 -0.2551 6.1593 21 1 2.7706 -0.2530 6.3446 22 6 1.1319 -1.6286 6.4162 23 6 1.7133 -2.5726 7.1578 24 6 1.0057 -3.7585 7.2521 25 6 -0.1507 -3.7774 6.5874 26 16 -0.3982 -2.2291 5.7904 27 1 -0.3633 0.4169 0.9393 28 1 -0.3633 0.6051 -0.8306 29 1 -0.3634 -1.0218 -0.1086 30 1 3.1300 1.4423 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 0.6657 1.1265 -3.4874 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2491 36 1 0.9937 0.7577 2.3564 37 1 0.8647 2.0202 3.9687 38 1 -0.4711 1.0754 4.6954 39 1 1.7757 2.5993 6.1248 40 1 0.0121 2.6342 6.4610 41 1 1.6325 1.0138 7.9350 42 1 0.0303 0.4162 7.3966 43 1 2.6642 -2.4230 7.6476 44 1 1.3624 -4.6042 7.8213 45 1 -0.8326 -4.6140 6.5481 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459227238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:27 Heat of formation + Delta-G solvation = -10.052595 kcal Electronic energy + Delta-G solvation = -25651.510363 eV Core-core repulsion = 22181.025639 eV Total energy + Delta-G solvation = -3470.484725 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43019 -39.35332 -38.24035 -37.77500 -35.02126 -33.16082 -32.06078 -31.81069 -28.38423 -27.57988 -27.46339 -26.73942 -24.98012 -23.77417 -22.11427 -21.05230 -20.59028 -20.29992 -19.43443 -17.89636 -17.74156 -17.38048 -16.64900 -16.56009 -16.19912 -15.76370 -15.39423 -14.83852 -14.69977 -14.58301 -14.21089 -14.07373 -13.93824 -13.69947 -13.58760 -13.42168 -13.22202 -13.06921 -12.78003 -12.68335 -12.60263 -12.30455 -12.24623 -12.17162 -12.11171 -11.79328 -11.55235 -11.49190 -11.31577 -11.13174 -10.72264 -10.39449 -10.12472 -9.67693 -9.43332 -9.32316 -8.03070 -6.17234 0.09758 0.73493 1.14602 1.42873 1.45150 1.52641 1.63019 1.93282 2.19668 2.46086 3.13446 3.21041 3.59444 3.66480 3.81785 4.15746 4.23073 4.31853 4.41352 4.51433 4.53679 4.61996 4.67920 4.69710 4.74888 4.90053 4.95722 4.98078 5.03867 5.09003 5.10793 5.17818 5.18391 5.30254 5.37054 5.38437 5.38681 5.60140 5.62805 5.66359 5.67887 6.07839 6.12490 6.20638 6.42990 6.85922 7.04676 7.49845 7.62357 8.96714 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018377 B = 0.003379 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.315990 B = 8285.227021 C = 9087.102576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.053 3.947 3 C -0.116 4.116 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.170 3.830 13 N -0.725 5.725 14 C 0.714 3.286 15 O -0.630 6.630 16 N -0.634 5.634 17 C 0.084 3.916 18 C -0.117 4.117 19 C -0.112 4.112 20 C 0.217 3.783 21 H 0.082 0.918 22 C -0.179 4.179 23 C -0.147 4.147 24 C -0.138 4.138 25 C -0.227 4.227 26 S 0.078 5.922 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.261 0.739 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.402 0.598 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.151 0.849 44 H 0.161 0.839 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 2.398 22.775 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.046 3.954 13 N -0.380 5.380 14 C 0.416 3.584 15 O -0.511 6.511 16 N -0.372 5.372 17 C -0.038 4.038 18 C -0.154 4.154 19 C -0.150 4.150 20 C 0.111 3.889 21 H 0.099 0.901 22 C -0.297 4.297 23 C -0.177 4.177 24 C -0.168 4.168 25 C -0.363 4.363 26 S 0.341 5.659 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.240 0.760 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.168 0.832 44 H 0.178 0.822 45 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -5.066 2.360 21.687 22.396 hybrid contribution 1.257 -1.240 -0.580 1.859 sum -3.809 1.120 21.107 21.477 Atomic orbital electron populations 1.21603 0.97044 0.99059 0.99484 1.18356 0.93233 0.93101 0.90117 1.21644 0.97834 0.97695 1.00196 1.21227 1.29631 1.14439 0.91605 0.93902 1.25426 0.95126 0.95546 1.00797 1.69924 1.38104 1.21885 1.23683 0.85792 0.78505 0.78848 0.79772 1.20461 1.20697 1.20190 1.21089 0.96514 0.94542 0.83269 1.45233 1.55862 1.33189 1.03765 1.15685 0.80038 0.82177 0.80533 1.90867 1.45067 1.28967 1.86191 1.47741 1.54826 1.30753 1.03910 1.22621 0.94686 0.85571 1.00889 1.22778 1.04510 0.96655 0.91500 1.22747 1.01818 0.92996 0.97432 1.20036 0.99257 0.88923 0.80662 0.90059 1.25037 0.99089 1.01403 1.04176 1.20320 1.02071 0.92887 1.02471 1.20418 0.94806 0.99392 1.02228 1.25903 1.03689 1.01585 1.05106 1.84315 1.20019 1.08953 1.52603 0.94742 0.91965 0.96524 0.96423 0.91731 0.94791 0.92987 0.94841 0.95038 0.76048 0.90200 0.90967 0.89565 0.86817 0.87137 0.89894 0.83154 0.82183 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.19 8.03 71.98 0.58 -4.62 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.23 8.11 71.98 0.58 -4.65 16 4 C -0.53 -28.68 8.01 25.60 0.20 -28.48 16 5 H 0.04 2.38 7.75 -2.91 -0.02 2.36 16 6 C 0.03 1.66 5.13 84.65 0.43 2.09 16 7 N -0.90 -48.11 9.45 21.45 0.20 -47.91 16 8 Si 0.94 43.13 29.54 68.60 2.03 45.16 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.17 7.70 4.50 86.38 0.39 8.09 16 13 N -0.72 -27.22 4.86 -478.53 -2.33 -29.55 16 14 C 0.71 26.83 8.28 179.05 1.48 28.31 16 15 O -0.63 -29.06 16.18 -4.00 -0.06 -29.12 16 16 N -0.63 -17.42 2.83 -810.02 -2.29 -19.72 16 17 C 0.08 1.60 6.57 86.85 0.57 2.17 16 18 C -0.12 -1.37 7.09 31.98 0.23 -1.14 16 19 C -0.11 -1.52 6.47 31.78 0.21 -1.31 16 20 C 0.22 5.03 3.28 44.60 0.15 5.18 16 21 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 22 C -0.18 -4.62 4.56 24.59 0.11 -4.51 16 23 C -0.15 -3.53 10.04 21.21 0.21 -3.32 16 24 C -0.14 -3.06 10.18 21.22 0.22 -2.85 16 25 C -0.23 -5.26 11.23 66.72 0.75 -4.51 16 26 S 0.08 2.06 23.07 -56.49 -1.30 0.76 16 27 H 0.03 1.32 6.71 -2.39 -0.02 1.31 16 28 H 0.06 3.08 6.25 -2.39 -0.01 3.07 16 29 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 3.21 6.10 -2.39 -0.01 3.20 16 32 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 33 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 34 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.40 13.28 4.64 -92.71 -0.43 12.85 16 37 H 0.08 1.49 7.31 -2.39 -0.02 1.47 16 38 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 42 H 0.08 1.12 7.84 -2.38 -0.02 1.10 16 43 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 44 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 45 H 0.18 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -67.29 368.45 2.88 -64.41 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.55 Total: 23.02 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: 6.08 Total: -7.06 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -4.42 Total: -97.17 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.06 Total: -29.12 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.30 Total: 0.76 kcal Total: -67.29 2.88 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459227238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.357 kcal (2) G-P(sol) polarization free energy of solvation -67.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds