Wall clock time and date at job start Tue Mar 31 2020 14:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47331 * 2 1 4 4 C 1.50697 * 109.46731 * 119.99996 * 2 1 3 5 5 H 1.08001 * 120.00556 * 122.07762 * 4 2 1 6 6 C 1.37878 * 120.00333 * 302.34565 * 4 2 1 7 7 N 1.31519 * 119.99805 * 353.19399 * 6 4 2 8 8 Si 1.86803 * 120.00590 * 173.19182 * 6 4 2 9 9 H 1.48498 * 109.46901 * 94.99007 * 8 6 4 10 10 H 1.48496 * 109.47193 * 214.99053 * 8 6 4 11 11 H 1.48497 * 109.46698 * 334.99290 * 8 6 4 12 12 C 1.53003 * 109.47121 * 239.99515 * 2 1 3 13 13 N 1.46500 * 109.46780 * 60.00529 * 12 2 1 14 14 C 1.34773 * 119.99662 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00144 * 359.97438 * 14 13 12 16 16 N 1.34775 * 119.99807 * 179.97438 * 14 13 12 17 17 C 1.47422 * 125.65011 * 359.69267 * 16 14 13 18 18 C 1.55132 * 104.72690 * 155.81754 * 17 16 14 19 19 C 1.55160 * 101.48516 * 37.29113 * 18 17 16 20 20 C 1.47029 * 125.65041 * 179.97438 * 16 14 13 21 21 H 1.09000 * 109.88249 * 300.43997 * 20 16 14 22 22 C 1.50703 * 109.87795 * 61.45059 * 20 16 14 23 23 C 1.38425 * 122.53412 * 218.28259 * 22 20 16 24 24 C 1.33390 * 114.91662 * 179.76425 * 23 22 20 25 25 S 1.75889 * 109.59421 * 0.47674 * 24 23 22 26 26 C 1.33380 * 122.53885 * 38.57636 * 22 20 16 27 27 H 1.09001 * 109.46903 * 300.00334 * 1 2 3 28 28 H 1.09001 * 109.46580 * 59.99956 * 1 2 3 29 29 H 1.08995 * 109.47092 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47284 * 174.13051 * 3 2 1 31 31 H 1.09003 * 109.47265 * 294.13075 * 3 2 1 32 32 H 1.09000 * 109.47286 * 54.12771 * 3 2 1 33 33 H 0.96999 * 120.00151 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47033 * 180.02562 * 12 2 1 35 35 H 1.08995 * 109.47377 * 300.00119 * 12 2 1 36 36 H 0.96999 * 120.00277 * 359.97438 * 13 12 2 37 37 H 1.08997 * 110.36779 * 274.74721 * 17 16 14 38 38 H 1.09001 * 110.36743 * 37.06840 * 17 16 14 39 39 H 1.09003 * 111.19083 * 279.19090 * 18 17 16 40 40 H 1.08998 * 110.91008 * 155.27564 * 18 17 16 41 41 H 1.08991 * 110.72191 * 205.97034 * 19 18 17 42 42 H 1.08999 * 110.86905 * 82.76990 * 19 18 17 43 43 H 1.08001 * 122.54284 * 0.02562 * 23 22 20 44 44 H 1.07999 * 125.20253 * 180.20872 * 24 23 22 45 45 H 1.08002 * 125.20608 * 0.02562 * 26 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6805 -1.5686 1.1319 6 6 1.6597 -0.2683 2.4822 7 7 0.9778 0.8492 2.6088 8 14 2.1233 -1.2564 3.9982 9 1 3.3832 -0.7198 4.5725 10 1 1.0374 -1.1553 5.0061 11 1 2.3178 -2.6794 3.6210 12 6 2.0400 -0.7214 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8778 -0.4910 -3.6694 15 8 2.5775 -1.4790 -3.7809 16 7 1.4282 0.1441 -4.7699 17 6 0.5710 1.3434 -4.7799 18 6 0.8506 2.0166 -6.1492 19 6 1.0096 0.7810 -7.0742 20 6 1.7065 -0.2479 -6.1593 21 1 2.7815 -0.2362 -6.3395 22 6 1.1579 -1.6267 -6.4225 23 6 1.8208 -2.5543 -7.2074 24 6 1.2004 -3.7283 -7.3351 25 16 -0.3136 -3.6956 -6.4403 26 6 -0.0058 -2.0434 -5.9214 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1249 1.4442 0.1051 31 1 1.7651 1.9251 -0.9379 32 1 1.5934 1.9858 0.8327 33 1 0.7161 1.1605 3.4894 34 1 3.1300 -0.7218 -1.2490 35 1 1.6767 -1.7490 -1.2492 36 1 0.9938 0.7578 -2.3564 37 1 -0.4786 1.0602 -4.7011 38 1 0.8462 2.0132 -3.9651 39 1 1.7688 2.6033 -6.1197 40 1 0.0059 2.6314 -6.4602 41 1 1.6367 1.0203 -7.9329 42 1 0.0371 0.4118 -7.3996 43 1 2.7705 -2.3451 -7.6773 44 1 1.5690 -4.5686 -7.9045 45 1 -0.6595 -1.4560 -5.2935 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459256074.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:31 Heat of formation + Delta-G solvation = -8.706374 kcal Electronic energy + Delta-G solvation = -25704.333817 eV Core-core repulsion = 22233.907468 eV Total energy + Delta-G solvation = -3470.426348 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55883 -39.61375 -38.08332 -37.54479 -34.98052 -33.08697 -31.95556 -31.20304 -29.06788 -27.58435 -27.46488 -26.72423 -25.21832 -23.71168 -22.06905 -21.03488 -20.58401 -19.77367 -18.99334 -18.77124 -17.81566 -17.17121 -16.72785 -16.62925 -15.95719 -15.72021 -15.30312 -14.79579 -14.68260 -14.56820 -14.18848 -14.05986 -13.96404 -13.74335 -13.56088 -13.42536 -13.25306 -13.06737 -12.88984 -12.69654 -12.59270 -12.26541 -12.24326 -12.15999 -12.07851 -11.77407 -11.53350 -11.49465 -11.30407 -11.11925 -10.73441 -10.38699 -10.09316 -9.71325 -9.49018 -9.21530 -8.03775 -6.17514 0.12076 0.78554 1.08949 1.41457 1.44709 1.53037 1.57734 1.93871 2.23055 2.45839 3.17091 3.20471 3.68494 3.73360 3.91697 4.13550 4.21268 4.32054 4.41573 4.49563 4.51278 4.59559 4.68122 4.69458 4.80997 4.91180 4.96876 4.99716 5.03536 5.08988 5.12407 5.15674 5.17930 5.30225 5.37208 5.41950 5.52511 5.56537 5.63621 5.65453 5.67663 6.12231 6.13471 6.20374 6.42590 6.85602 7.08420 7.49465 7.65847 8.96119 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017190 B = 0.003310 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.475580 B = 8457.429188 C = 9403.702370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.053 3.947 3 C -0.114 4.114 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.277 1.277 12 C 0.171 3.829 13 N -0.726 5.726 14 C 0.712 3.288 15 O -0.632 6.632 16 N -0.631 5.631 17 C 0.086 3.914 18 C -0.118 4.118 19 C -0.109 4.109 20 C 0.207 3.793 21 H 0.071 0.929 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.211 4.211 25 S 0.079 5.921 26 C -0.210 4.210 27 H 0.060 0.940 28 H 0.035 0.965 29 H 0.017 0.983 30 H 0.015 0.985 31 H 0.033 0.967 32 H 0.064 0.936 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.031 0.969 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.154 0.846 44 H 0.187 0.813 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 2.314 -22.994 23.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.052 3.948 3 C -0.172 4.172 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.205 1.205 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.046 3.954 13 N -0.382 5.382 14 C 0.414 3.586 15 O -0.513 6.513 16 N -0.369 5.369 17 C -0.036 4.036 18 C -0.155 4.155 19 C -0.147 4.147 20 C 0.101 3.899 21 H 0.089 0.911 22 C -0.120 4.120 23 C -0.166 4.166 24 C -0.346 4.346 25 S 0.342 5.658 26 C -0.346 4.346 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.240 0.760 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.103 0.897 43 H 0.171 0.829 44 H 0.204 0.796 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.015 0.616 -22.589 23.147 hybrid contribution 1.280 0.427 1.303 1.876 sum -3.736 1.043 -21.286 21.637 Atomic orbital electron populations 1.21605 0.97076 0.98521 1.00146 1.18355 0.93220 0.93115 0.90130 1.21645 0.98231 0.97791 0.99506 1.21237 1.30293 1.13807 0.91600 0.93935 1.25423 0.95085 0.95576 1.00789 1.69932 1.39209 1.20798 1.23622 0.85775 0.77852 0.79320 0.80055 1.20520 1.20585 1.20200 1.21072 0.96506 0.94484 0.83339 1.45228 1.55988 1.33178 1.03779 1.15700 0.80134 0.82186 0.80557 1.90860 1.44916 1.29345 1.86221 1.47679 1.54199 1.31024 1.03970 1.22645 0.94615 0.85728 1.00626 1.22804 1.04235 0.96729 0.91779 1.22693 1.01734 0.93059 0.97262 1.20194 0.99047 0.90382 0.80297 0.91083 1.19321 0.94546 0.98393 0.99702 1.20229 1.01977 0.93030 1.01369 1.25844 0.99016 1.02749 1.07033 1.84141 1.22025 1.11759 1.47855 1.25308 1.02451 0.98931 1.07877 0.92064 0.94598 0.96420 0.96557 0.94824 0.91740 0.92984 0.94937 0.95101 0.76047 0.90680 0.90546 0.89892 0.87009 0.87586 0.89744 0.82858 0.79625 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.05 71.98 0.58 -4.64 16 2 C 0.05 2.49 0.50 -52.93 -0.03 2.46 16 3 C -0.11 -5.16 8.08 71.98 0.58 -4.57 16 4 C -0.53 -28.71 8.01 25.60 0.20 -28.50 16 5 H 0.04 2.37 7.75 -2.91 -0.02 2.34 16 6 C 0.03 1.67 5.12 84.65 0.43 2.10 16 7 N -0.90 -48.05 9.47 21.45 0.20 -47.85 16 8 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 9 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 C 0.17 7.69 4.50 86.38 0.39 8.08 16 13 N -0.73 -27.01 4.87 -478.54 -2.33 -29.34 16 14 C 0.71 26.58 8.16 179.06 1.46 28.04 16 15 O -0.63 -29.15 16.17 -3.99 -0.06 -29.22 16 16 N -0.63 -16.99 2.61 -809.59 -2.12 -19.10 16 17 C 0.09 1.57 6.59 86.93 0.57 2.15 16 18 C -0.12 -1.35 7.10 32.07 0.23 -1.13 16 19 C -0.11 -1.44 6.47 31.78 0.21 -1.23 16 20 C 0.21 4.70 3.14 44.59 0.14 4.84 16 21 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 22 C -0.11 -2.68 3.98 -20.92 -0.08 -2.76 16 23 C -0.14 -3.13 9.96 21.22 0.21 -2.91 16 24 C -0.21 -4.54 11.23 66.72 0.75 -3.79 16 25 S 0.08 1.86 23.34 -56.49 -1.32 0.54 16 26 C -0.21 -5.50 10.39 66.72 0.69 -4.81 16 27 H 0.06 3.03 6.16 -2.39 -0.01 3.02 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.03 1.27 6.72 -2.39 -0.02 1.25 16 32 H 0.06 3.19 6.20 -2.39 -0.01 3.18 16 33 H 0.26 13.40 8.31 -92.71 -0.77 12.63 16 34 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.40 13.09 4.63 -92.71 -0.43 12.66 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.40 7.29 -2.39 -0.02 1.38 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 1.07 7.84 -2.39 -0.02 1.05 16 43 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 44 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 45 H 0.15 3.98 8.01 -2.91 -0.02 3.95 16 Total: -1.00 -66.83 367.71 3.30 -63.54 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.56 Total: 22.96 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.34 Total: -6.66 kcal Atomic # 7 Polarization: -92.04 SS G_CDS: -4.24 Total: -96.29 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.32 Total: 0.54 kcal Total: -66.83 3.30 -63.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459256074.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.829 kcal (2) G-P(sol) polarization free energy of solvation -66.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds