Wall clock time and date at job start Tue Mar 31 2020 14:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 102.99813 * 2 1 4 4 C 1.50705 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.03829 * 270.25332 * 4 3 2 6 6 C 1.38262 * 120.07214 * 180.30200 * 5 4 3 7 7 C 1.38305 * 120.13801 * 359.72089 * 6 5 4 8 8 C 1.38101 * 120.06919 * 0.02562 * 7 6 5 9 9 C 1.38847 * 120.03218 * 90.00358 * 4 3 2 10 10 N 1.39943 * 120.07006 * 359.97227 * 9 4 3 11 11 C 1.34778 * 120.00247 * 154.92928 * 10 9 4 12 12 O 1.21592 * 119.99407 * 354.33204 * 11 10 9 13 13 N 1.34770 * 120.00156 * 174.06356 * 11 10 9 14 14 C 1.46507 * 119.99949 * 180.27193 * 13 11 10 15 15 C 1.52998 * 109.47011 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47334 * 299.99866 * 15 14 13 17 17 C 1.53002 * 109.47186 * 60.00020 * 15 14 13 18 18 C 1.50698 * 109.47028 * 179.97438 * 15 14 13 19 19 H 1.07998 * 120.00192 * 4.83510 * 18 15 14 20 20 C 1.37881 * 119.99995 * 184.83377 * 18 15 14 21 21 N 1.31514 * 120.00070 * 354.87865 * 20 18 15 22 22 Si 1.86802 * 119.99851 * 174.88751 * 20 18 15 23 23 H 1.48499 * 109.47239 * 94.99682 * 22 20 18 24 24 H 1.48501 * 109.46831 * 214.99619 * 22 20 18 25 25 H 1.48501 * 109.46912 * 334.99268 * 22 20 18 26 26 H 1.09001 * 109.47138 * 299.99802 * 1 2 3 27 27 H 1.08999 * 109.47254 * 60.00348 * 1 2 3 28 28 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47035 * 60.00331 * 3 2 1 30 30 H 1.08995 * 109.47011 * 300.00019 * 3 2 1 31 31 H 1.08000 * 119.96644 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.93158 * 179.74517 * 6 5 4 33 33 H 1.08001 * 119.96839 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.03365 * 180.02562 * 8 7 6 35 35 H 0.97005 * 120.00215 * 334.92169 * 10 9 4 36 36 H 0.97001 * 120.00089 * 0.27320 * 13 11 10 37 37 H 1.08997 * 109.46971 * 299.99840 * 14 13 11 38 38 H 1.08999 * 109.46771 * 60.00015 * 14 13 11 39 39 H 1.09007 * 109.46724 * 64.98587 * 16 15 14 40 40 H 1.08999 * 109.47231 * 184.98207 * 16 15 14 41 41 H 1.08998 * 109.47106 * 304.98542 * 16 15 14 42 42 H 1.09003 * 109.46810 * 59.99749 * 17 15 14 43 43 H 1.09000 * 109.47177 * 179.97438 * 17 15 14 44 44 H 1.08998 * 109.47448 * 300.00131 * 17 15 14 45 45 H 0.96999 * 119.99668 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 6 4.4066 2.0101 1.1967 6 6 5.7797 2.1722 1.1981 7 6 6.4702 2.2562 0.0028 8 6 5.7897 2.1788 -1.1964 9 6 4.4105 2.0156 -1.2011 10 7 3.7179 1.9364 -2.4146 11 6 4.2394 2.4931 -3.5258 12 8 5.2588 3.1520 -3.4545 13 7 3.6338 2.3151 -4.7165 14 6 4.2040 2.9154 -5.9253 15 6 3.3303 2.5625 -7.1307 16 6 3.2756 1.0422 -7.2934 17 6 1.9159 3.1031 -6.9112 18 6 3.9164 3.1805 -8.3739 19 1 4.8619 3.7000 -8.3245 20 6 3.2455 3.0826 -9.5745 21 7 2.1462 2.3654 -9.6570 22 14 3.8982 3.9685 -11.0840 23 1 4.7354 3.0367 -11.8815 24 1 2.7593 4.4419 -11.9111 25 1 4.7185 5.1313 -10.6595 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8031 2.2371 0.8901 30 1 1.8031 2.2371 -0.8899 31 1 3.8702 1.9448 2.1318 32 1 6.3141 2.2330 2.1346 33 1 7.5428 2.3823 0.0071 34 1 6.3295 2.2441 -2.1295 35 1 2.8626 1.4806 -2.4561 36 1 2.8205 1.7895 -4.7733 37 1 4.2433 3.9984 -5.8092 38 1 5.2114 2.5298 -6.0819 39 1 2.7712 0.6026 -6.4328 40 1 2.7273 0.7935 -8.2020 41 1 4.2893 0.6473 -7.3612 42 1 1.9549 4.1863 -6.7953 43 1 1.2936 2.8521 -7.7702 44 1 1.4917 2.6566 -6.0119 45 1 1.6745 2.2963 -10.5017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459488300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:44 Heat of formation + Delta-G solvation = -8.252630 kcal Electronic energy + Delta-G solvation = -24837.093769 eV Core-core repulsion = 21366.687096 eV Total energy + Delta-G solvation = -3470.406672 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.64252 -38.78472 -36.54216 -34.69283 -33.40004 -32.76266 -31.01395 -29.47197 -29.25082 -27.07630 -25.76249 -25.63711 -24.90846 -22.90039 -21.53474 -20.57041 -18.87577 -18.37742 -17.49991 -16.57718 -15.95352 -15.81949 -15.52511 -15.01251 -14.80378 -14.57153 -14.32938 -14.03295 -13.99500 -13.81862 -13.44857 -13.20691 -12.95036 -12.88841 -12.78286 -12.28199 -12.23026 -11.60103 -11.45487 -11.32605 -11.22104 -10.91147 -10.71709 -10.51240 -10.40561 -10.32382 -10.21565 -9.75387 -9.66334 -9.36083 -8.86112 -8.77476 -8.55384 -8.37006 -7.97929 -7.89910 -6.05434 -4.15090 0.84945 1.40687 1.78138 2.32211 2.84754 3.26392 3.34137 3.35261 3.38865 3.91281 4.34866 4.42276 4.51557 4.52997 4.83475 4.86318 4.96112 5.06621 5.16684 5.21371 5.35458 5.41133 5.55990 5.64003 5.95317 6.10166 6.26947 6.29573 6.35034 6.46045 6.50526 6.58278 6.72442 6.78695 6.85571 6.97376 6.98496 7.07050 7.18028 7.33252 7.51174 7.67036 7.97811 8.07801 8.24267 8.36310 8.78525 8.86341 9.50696 10.95897 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002913 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.248977 B = 9608.789914 C =10909.563565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.256 6.256 3 C -0.041 4.041 4 C -0.122 4.122 5 C -0.079 4.079 6 C -0.150 4.150 7 C -0.090 4.090 8 C -0.134 4.134 9 C 0.202 3.798 10 N -0.687 5.687 11 C 0.695 3.305 12 O -0.578 6.578 13 N -0.725 5.725 14 C 0.148 3.852 15 C 0.056 3.944 16 C -0.129 4.129 17 C -0.132 4.132 18 C -0.506 4.506 19 H 0.058 0.942 20 C 0.067 3.933 21 N -0.885 5.885 22 Si 0.893 3.107 23 H -0.282 1.282 24 H -0.286 1.286 25 H -0.273 1.273 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.152 0.848 35 H 0.406 0.594 36 H 0.396 0.604 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.006 0.994 40 H 0.083 0.917 41 H 0.026 0.974 42 H 0.026 0.974 43 H 0.089 0.911 44 H 0.004 0.996 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 -3.758 20.925 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S -0.028 6.028 3 C -0.188 4.188 4 C -0.126 4.126 5 C -0.099 4.099 6 C -0.170 4.170 7 C -0.110 4.110 8 C -0.154 4.154 9 C 0.103 3.897 10 N -0.333 5.333 11 C 0.396 3.604 12 O -0.455 6.455 13 N -0.378 5.378 14 C 0.026 3.974 15 C 0.056 3.944 16 C -0.187 4.187 17 C -0.190 4.190 18 C -0.545 4.545 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.721 3.279 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.198 1.198 26 H 0.095 0.905 27 H 0.097 0.903 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.105 0.895 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.170 0.830 35 H 0.242 0.758 36 H 0.231 0.769 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.025 0.975 40 H 0.102 0.898 41 H 0.045 0.955 42 H 0.046 0.954 43 H 0.108 0.892 44 H 0.023 0.977 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.838 -4.093 20.671 21.089 hybrid contribution -1.460 1.009 -0.878 1.980 sum -2.298 -3.084 19.793 20.164 Atomic orbital electron populations 1.23432 0.94599 1.06611 1.04993 1.87315 1.06755 1.10744 1.97971 1.22203 0.96056 0.94807 1.05780 1.18809 0.92561 1.08732 0.92531 1.20714 0.94300 0.98599 0.96332 1.21020 0.94103 1.03705 0.98125 1.21118 0.99971 0.97971 0.91918 1.21536 0.92322 1.01375 1.00201 1.17378 0.91228 0.97393 0.83671 1.42857 1.24705 1.58866 1.06898 1.16082 0.83757 0.80117 0.80464 1.90860 1.25172 1.44339 1.85177 1.45585 1.29976 1.56056 1.06205 1.21697 0.97311 0.96636 0.81773 1.18369 0.92000 0.93269 0.90804 1.21829 0.99211 0.97062 1.00620 1.21845 0.99517 0.98079 0.99575 1.20978 1.06404 1.34951 0.92157 0.92337 1.24876 0.94950 0.94996 0.98655 1.69807 1.17596 1.39278 1.25666 0.86563 0.78496 0.80132 0.82742 1.20776 1.21209 1.19800 0.90538 0.90310 0.88013 0.88887 0.89528 0.85831 0.86079 0.85770 0.83025 0.75830 0.76941 0.92602 0.92628 0.97467 0.89784 0.95498 0.95438 0.89216 0.97664 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.87 10.76 101.05 1.09 0.22 16 2 S -0.26 -2.51 22.36 -107.50 -2.40 -4.91 16 3 C -0.04 -0.39 5.50 36.01 0.20 -0.19 16 4 C -0.12 -1.40 5.16 -104.43 -0.54 -1.94 16 5 C -0.08 -0.82 9.70 -39.61 -0.38 -1.20 16 6 C -0.15 -1.54 10.04 -39.55 -0.40 -1.94 16 7 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 8 C -0.13 -1.95 8.72 -39.39 -0.34 -2.29 16 9 C 0.20 2.81 6.41 -83.69 -0.54 2.28 16 10 N -0.69 -9.64 4.98 -14.22 -0.07 -9.71 16 11 C 0.70 12.13 8.37 -86.92 -0.73 11.40 16 12 O -0.58 -11.86 13.51 5.28 0.07 -11.79 16 13 N -0.72 -12.65 4.99 -65.22 -0.33 -12.97 16 14 C 0.15 3.09 4.51 -4.04 -0.02 3.07 16 15 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -2.86 8.10 37.16 0.30 -2.56 16 17 C -0.13 -2.93 8.02 37.16 0.30 -2.63 16 18 C -0.51 -13.07 8.01 -34.44 -0.28 -13.34 16 19 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 20 C 0.07 1.73 5.12 -17.82 -0.09 1.64 16 21 N -0.88 -23.27 9.36 55.43 0.52 -22.75 16 22 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H 0.08 0.44 8.14 -51.92 -0.42 0.01 16 27 H 0.08 0.50 8.14 -51.92 -0.42 0.08 16 28 H 0.10 0.62 8.14 -51.92 -0.42 0.19 16 29 H 0.09 0.72 8.09 -51.92 -0.42 0.30 16 30 H 0.09 0.80 6.99 -51.93 -0.36 0.44 16 31 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 34 H 0.15 2.54 5.79 -52.49 -0.30 2.23 16 35 H 0.41 4.80 7.43 -40.82 -0.30 4.49 16 36 H 0.40 6.21 6.22 -40.82 -0.25 5.96 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.01 0.12 7.01 -51.93 -0.36 -0.24 16 40 H 0.08 2.07 6.17 -51.93 -0.32 1.75 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.20 5.89 -51.93 -0.31 1.90 16 44 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 45 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -28.60 372.71 -10.28 -38.87 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: -6.76 Total: 9.92 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -1.90 Total: -7.75 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.12 Total: -45.44 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.07 Total: -11.79 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.40 Total: -4.91 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -28.60 -10.28 -38.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459488300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.622 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds