Wall clock time and date at job start Tue Mar 31 2020 14:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81398 * 102.99813 * 2 1 4 4 C 1.50705 * 109.46881 * 179.97438 * 3 2 1 5 5 C 1.38129 * 120.03829 * 270.25332 * 4 3 2 6 6 C 1.38262 * 120.07214 * 180.30200 * 5 4 3 7 7 C 1.38305 * 120.13801 * 359.72089 * 6 5 4 8 8 C 1.38101 * 120.06919 * 0.02562 * 7 6 5 9 9 C 1.38847 * 120.03218 * 90.00358 * 4 3 2 10 10 N 1.39943 * 120.07006 * 359.97227 * 9 4 3 11 11 C 1.34778 * 120.00247 * 154.92928 * 10 9 4 12 12 O 1.21592 * 119.99407 * 354.33204 * 11 10 9 13 13 N 1.34770 * 120.00156 * 174.06356 * 11 10 9 14 14 C 1.46507 * 119.99949 * 180.27193 * 13 11 10 15 15 C 1.52998 * 109.47011 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47334 * 299.99866 * 15 14 13 17 17 C 1.53002 * 109.47186 * 60.00020 * 15 14 13 18 18 C 1.50698 * 109.47028 * 179.97438 * 15 14 13 19 19 H 1.07998 * 120.00192 * 4.83510 * 18 15 14 20 20 C 1.37881 * 119.99995 * 184.83377 * 18 15 14 21 21 N 1.31514 * 120.00070 * 354.87865 * 20 18 15 22 22 Si 1.86802 * 119.99851 * 174.88751 * 20 18 15 23 23 H 1.48499 * 109.47239 * 94.99682 * 22 20 18 24 24 H 1.48501 * 109.46831 * 214.99619 * 22 20 18 25 25 H 1.48501 * 109.46912 * 334.99268 * 22 20 18 26 26 H 1.09001 * 109.47138 * 299.99802 * 1 2 3 27 27 H 1.08999 * 109.47254 * 60.00348 * 1 2 3 28 28 H 1.09005 * 109.47124 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47035 * 60.00331 * 3 2 1 30 30 H 1.08995 * 109.47011 * 300.00019 * 3 2 1 31 31 H 1.08000 * 119.96644 * 0.02562 * 5 4 3 32 32 H 1.07996 * 119.93158 * 179.74517 * 6 5 4 33 33 H 1.08001 * 119.96839 * 180.02562 * 7 6 5 34 34 H 1.07997 * 120.03365 * 180.02562 * 8 7 6 35 35 H 0.97005 * 120.00215 * 334.92169 * 10 9 4 36 36 H 0.97001 * 120.00089 * 0.27320 * 13 11 10 37 37 H 1.08997 * 109.46971 * 299.99840 * 14 13 11 38 38 H 1.08999 * 109.46771 * 60.00015 * 14 13 11 39 39 H 1.09007 * 109.46724 * 64.98587 * 16 15 14 40 40 H 1.08999 * 109.47231 * 184.98207 * 16 15 14 41 41 H 1.08998 * 109.47106 * 304.98542 * 16 15 14 42 42 H 1.09003 * 109.46810 * 59.99749 * 17 15 14 43 43 H 1.09000 * 109.47177 * 179.97438 * 17 15 14 44 44 H 1.08998 * 109.47448 * 300.00131 * 17 15 14 45 45 H 0.96999 * 119.99668 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 6 4.4066 2.0101 1.1967 6 6 5.7797 2.1722 1.1981 7 6 6.4702 2.2562 0.0028 8 6 5.7897 2.1788 -1.1964 9 6 4.4105 2.0156 -1.2011 10 7 3.7179 1.9364 -2.4146 11 6 4.2394 2.4931 -3.5258 12 8 5.2588 3.1520 -3.4545 13 7 3.6338 2.3151 -4.7165 14 6 4.2040 2.9154 -5.9253 15 6 3.3303 2.5625 -7.1307 16 6 3.2756 1.0422 -7.2934 17 6 1.9159 3.1031 -6.9112 18 6 3.9164 3.1805 -8.3739 19 1 4.8619 3.7000 -8.3245 20 6 3.2455 3.0826 -9.5745 21 7 2.1462 2.3654 -9.6570 22 14 3.8982 3.9685 -11.0840 23 1 4.7354 3.0367 -11.8815 24 1 2.7593 4.4419 -11.9111 25 1 4.7185 5.1313 -10.6595 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8031 2.2371 0.8901 30 1 1.8031 2.2371 -0.8899 31 1 3.8702 1.9448 2.1318 32 1 6.3141 2.2330 2.1346 33 1 7.5428 2.3823 0.0071 34 1 6.3295 2.2441 -2.1295 35 1 2.8626 1.4806 -2.4561 36 1 2.8205 1.7895 -4.7733 37 1 4.2433 3.9984 -5.8092 38 1 5.2114 2.5298 -6.0819 39 1 2.7712 0.6026 -6.4328 40 1 2.7273 0.7935 -8.2020 41 1 4.2893 0.6473 -7.3612 42 1 1.9549 4.1863 -6.7953 43 1 1.2936 2.8521 -7.7702 44 1 1.4917 2.6566 -6.0119 45 1 1.6745 2.2963 -10.5017 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459488300.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:44 Heat of formation + Delta-G solvation = -23.027124 kcal Electronic energy + Delta-G solvation = -24837.734439 eV Core-core repulsion = 21366.687096 eV Total energy + Delta-G solvation = -3471.047343 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.84810 -39.94156 -38.21364 -35.87355 -35.07444 -33.65487 -32.78532 -30.50381 -29.81971 -27.93870 -27.57080 -27.42866 -26.62633 -24.01497 -22.49556 -21.84295 -20.63688 -19.67704 -18.62333 -17.79513 -17.37622 -16.97535 -16.69237 -16.49182 -16.26166 -15.81434 -15.34774 -15.08822 -14.84712 -14.76309 -14.72686 -14.54247 -14.38175 -14.00929 -13.75344 -13.57400 -13.24500 -13.10172 -13.07767 -12.70134 -12.59896 -12.50168 -12.28171 -12.19354 -12.12430 -11.58293 -11.49305 -11.25530 -11.04652 -11.02102 -10.74383 -10.37325 -10.04318 -9.67315 -8.93956 -8.70277 -8.03142 -6.18210 0.02806 0.45920 1.04222 1.42192 1.45630 1.53360 1.59651 1.67635 2.03714 2.45905 2.95630 3.19504 3.21465 3.61839 3.77668 4.14245 4.26717 4.35650 4.37606 4.38982 4.42152 4.51041 4.53528 4.65086 4.69957 4.71880 4.93699 4.96070 5.04695 5.07389 5.10192 5.19221 5.29896 5.33301 5.43657 5.54123 5.57620 5.65512 5.67493 5.68156 5.95763 6.11111 6.14454 6.21102 6.43349 6.85747 6.94108 7.43468 7.49401 8.95825 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.002913 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.248977 B = 9608.789914 C =10909.563565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.298 6.298 3 C -0.034 4.034 4 C -0.118 4.118 5 C -0.079 4.079 6 C -0.142 4.142 7 C -0.098 4.098 8 C -0.161 4.161 9 C 0.173 3.827 10 N -0.672 5.672 11 C 0.696 3.304 12 O -0.612 6.612 13 N -0.718 5.718 14 C 0.167 3.833 15 C 0.053 3.947 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.529 4.529 19 H 0.046 0.954 20 C 0.029 3.971 21 N -0.898 5.898 22 Si 0.944 3.056 23 H -0.280 1.280 24 H -0.282 1.282 25 H -0.275 1.275 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.086 0.914 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.139 0.861 34 H 0.121 0.879 35 H 0.417 0.583 36 H 0.406 0.594 37 H 0.040 0.960 38 H 0.039 0.961 39 H 0.035 0.965 40 H 0.059 0.941 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.067 0.933 44 H 0.035 0.965 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.362 -4.077 23.387 23.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.070 6.070 3 C -0.181 4.181 4 C -0.123 4.123 5 C -0.099 4.099 6 C -0.160 4.160 7 C -0.117 4.117 8 C -0.182 4.182 9 C 0.075 3.925 10 N -0.319 5.319 11 C 0.397 3.603 12 O -0.492 6.492 13 N -0.373 5.373 14 C 0.043 3.957 15 C 0.052 3.948 16 C -0.177 4.177 17 C -0.180 4.180 18 C -0.568 4.568 19 H 0.064 0.936 20 C -0.170 4.170 21 N -0.537 5.537 22 Si 0.771 3.229 23 H -0.206 1.206 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.127 0.873 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.157 0.843 34 H 0.138 0.862 35 H 0.255 0.745 36 H 0.243 0.757 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.038 0.962 42 H 0.037 0.963 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.023 -4.438 23.170 23.678 hybrid contribution -1.097 1.074 -1.514 2.156 sum -3.119 -3.365 21.656 22.137 Atomic orbital electron populations 1.23483 0.91581 1.07438 1.06020 1.87464 1.10122 1.11348 1.98105 1.22187 0.94589 0.94478 1.06844 1.19057 0.93815 1.07467 0.91935 1.21141 0.94560 0.97164 0.96993 1.21410 0.94373 1.01629 0.98623 1.21340 1.00922 0.97771 0.91662 1.21437 0.93013 1.03647 1.00109 1.17593 0.91260 0.99455 0.84151 1.42569 1.24905 1.58267 1.06135 1.16140 0.83270 0.79916 0.81000 1.90850 1.26709 1.45873 1.85761 1.45260 1.30311 1.56235 1.05458 1.21224 0.96311 0.95707 0.82489 1.18353 0.92486 0.93518 0.90431 1.21669 0.98725 0.96670 1.00658 1.21685 0.98686 0.97655 0.99990 1.21270 1.06274 1.35377 0.93852 0.93612 1.25434 0.95306 0.95608 1.00697 1.69909 1.18043 1.39650 1.26060 0.85764 0.77969 0.79065 0.80128 1.20608 1.20780 1.20020 0.89055 0.89751 0.87278 0.86720 0.89556 0.82859 0.82887 0.84289 0.86155 0.74536 0.75701 0.94162 0.94225 0.94576 0.92191 0.96168 0.96323 0.91468 0.94562 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.26 10.76 113.37 1.22 -0.04 16 2 S -0.30 -5.20 22.36 -56.49 -1.26 -6.46 16 3 C -0.03 -0.55 5.50 71.24 0.39 -0.16 16 4 C -0.12 -2.50 5.16 -19.74 -0.10 -2.60 16 5 C -0.08 -1.38 9.70 22.25 0.22 -1.16 16 6 C -0.14 -2.51 10.04 22.29 0.22 -2.29 16 7 C -0.10 -2.22 10.04 22.25 0.22 -1.99 16 8 C -0.16 -4.80 8.72 22.39 0.20 -4.60 16 9 C 0.17 4.75 6.41 38.15 0.24 5.00 16 10 N -0.67 -18.65 4.98 -317.18 -1.58 -20.23 16 11 C 0.70 24.60 8.37 179.06 1.50 26.10 16 12 O -0.61 -26.08 13.51 -4.01 -0.05 -26.13 16 13 N -0.72 -24.95 4.99 -478.53 -2.39 -27.34 16 14 C 0.17 7.07 4.51 86.38 0.39 7.46 16 15 C 0.05 2.42 0.50 -52.93 -0.03 2.39 16 16 C -0.12 -5.26 8.10 71.98 0.58 -4.68 16 17 C -0.12 -5.36 8.02 71.98 0.58 -4.78 16 18 C -0.53 -27.81 8.01 25.60 0.21 -27.61 16 19 H 0.05 2.46 7.75 -2.91 -0.02 2.43 16 20 C 0.03 1.54 5.12 84.66 0.43 1.97 16 21 N -0.90 -47.48 9.36 21.45 0.20 -47.28 16 22 Si 0.94 42.38 29.54 68.60 2.03 44.41 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.11 1.37 8.09 -2.39 -0.02 1.35 16 30 H 0.09 1.41 6.99 -2.39 -0.02 1.39 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 34 H 0.12 4.31 5.79 -2.91 -0.02 4.29 16 35 H 0.42 9.42 7.43 -92.70 -0.69 8.73 16 36 H 0.41 12.21 6.22 -92.71 -0.58 11.64 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.04 1.33 7.01 -2.38 -0.02 1.32 16 40 H 0.06 2.95 6.17 -2.39 -0.01 2.94 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 3.28 5.89 -2.39 -0.01 3.27 16 44 H 0.04 1.31 6.86 -2.39 -0.02 1.30 16 45 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -63.16 372.71 2.95 -60.21 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: -0.26 Total: 29.83 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 6.27 Total: -7.00 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -3.77 Total: -94.85 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.26 Total: -6.46 kcal Total: -63.16 2.95 -60.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459488300.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.182 kcal (2) G-P(sol) polarization free energy of solvation -63.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds