Wall clock time and date at job start Tue Mar 31 2020 13:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47098 * 98.42416 * 3 2 1 5 5 C 1.36650 * 119.99930 * 270.32445 * 4 3 2 6 6 H 1.07998 * 120.00288 * 192.98673 * 5 4 3 7 7 C 1.39199 * 120.00143 * 12.97986 * 5 4 3 8 8 N 1.31275 * 119.99800 * 9.75895 * 7 5 4 9 9 Si 1.86800 * 120.00346 * 189.75513 * 7 5 4 10 10 H 1.48501 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47167 * 120.00486 * 9 7 5 12 12 H 1.48504 * 109.46790 * 240.00190 * 9 7 5 13 13 C 1.34775 * 120.00214 * 90.32139 * 4 3 2 14 14 O 1.21610 * 120.00023 * 185.45118 * 13 4 3 15 15 C 1.47682 * 119.99946 * 5.18616 * 13 4 3 16 16 C 1.39054 * 121.12326 * 55.11029 * 15 13 4 17 17 C 1.39163 * 119.56745 * 180.02562 * 16 15 13 18 18 C 1.50701 * 119.05007 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47249 * 274.99885 * 18 17 16 20 20 C 1.52998 * 109.47407 * 34.99876 * 18 17 16 21 21 N 1.31047 * 121.90016 * 359.97438 * 17 16 15 22 22 C 1.33569 * 121.85277 * 0.02562 * 21 17 16 23 23 C 1.40691 * 120.96488 * 180.02562 * 22 21 17 24 24 C 1.36089 * 119.73882 * 179.15859 * 23 22 21 25 25 C 1.39326 * 121.04367 * 0.82957 * 24 23 22 26 26 C 1.36290 * 120.83140 * 359.43124 * 25 24 23 27 27 C 1.40055 * 119.64113 * 0.02562 * 26 25 24 28 28 H 4.40640 * 5.51493 * 180.02562 * 4 1 2 29 29 H 1.08991 * 109.47135 * 338.41774 * 3 2 1 30 30 H 1.09002 * 109.46669 * 218.41919 * 3 2 1 31 31 H 0.96999 * 120.00150 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.21780 * 359.97438 * 16 15 13 33 33 H 1.09003 * 109.46992 * 154.99922 * 18 17 16 34 34 H 1.09002 * 109.46893 * 59.99584 * 19 18 17 35 35 H 1.08991 * 109.47389 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46919 * 300.00018 * 19 18 17 37 37 H 1.09002 * 109.46762 * 300.00432 * 20 18 17 38 38 H 1.09004 * 109.47052 * 59.99673 * 20 18 17 39 39 H 1.08991 * 109.47377 * 180.02562 * 20 18 17 40 40 H 1.07999 * 120.13446 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.48013 * 180.28539 * 24 23 22 42 42 H 1.08001 * 119.58586 * 179.45600 * 25 24 23 43 43 H 1.07994 * 120.17967 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2032 -1.3663 5 6 3.3561 -0.8726 -2.1791 6 1 3.9072 -0.7494 -3.0997 7 6 2.8719 -2.1275 -1.8205 8 7 2.0441 -2.2470 -0.8087 9 14 3.4001 -3.6413 -2.7790 10 1 4.3314 -3.2403 -3.8639 11 1 4.0844 -4.5915 -1.8658 12 1 2.2045 -4.2957 -3.3689 13 6 3.3645 1.4506 -1.8217 14 8 3.6741 1.6259 -2.9846 15 6 3.2351 2.6052 -0.9099 16 6 3.9454 2.6611 0.2842 17 6 3.7986 3.7645 1.1195 18 6 4.5745 3.8133 2.4105 19 6 3.8036 3.0615 3.4976 20 6 5.9420 3.1574 2.2089 21 7 3.0059 4.7627 0.8154 22 6 2.2929 4.7778 -0.3140 23 6 1.4479 5.8596 -0.6222 24 6 0.7458 5.8570 -1.7880 25 6 0.8360 4.7894 -2.6786 26 6 1.6402 3.7222 -2.4107 27 6 2.3855 3.6970 -1.2252 28 1 -1.0501 0.0002 0.0000 29 1 3.0097 -0.9547 0.3780 30 1 3.0089 0.8060 0.6386 31 1 1.7064 -3.1213 -0.5590 32 1 4.6061 1.8532 0.5620 33 1 4.7105 4.8514 2.7136 34 1 3.6675 2.0234 3.1944 35 1 4.3649 3.0964 4.4312 36 1 2.8294 3.5288 3.6412 37 1 5.8058 2.1193 1.9058 38 1 6.4911 3.6930 1.4345 39 1 6.5029 3.1923 3.1428 40 1 1.3667 6.6949 0.0575 41 1 0.1019 6.6918 -2.0225 42 1 0.2616 4.8079 -3.5931 43 1 1.7024 2.9005 -3.1087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490975971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:37 Heat of formation + Delta-G solvation = 87.946239 kcal Electronic energy + Delta-G solvation = -27293.961015 eV Core-core repulsion = 23692.281887 eV Total energy + Delta-G solvation = -3601.679128 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78499 -38.56256 -37.57824 -35.38262 -34.57173 -33.12089 -31.99378 -31.39113 -29.79619 -29.52785 -27.17074 -26.62389 -25.43354 -24.03773 -23.56758 -22.22536 -20.87443 -19.17172 -18.06551 -17.60034 -17.15326 -16.93739 -16.27717 -15.52506 -14.71627 -14.60514 -14.58087 -14.31886 -14.05706 -13.95796 -13.78423 -13.60634 -13.14493 -12.98786 -12.71941 -12.41204 -12.28431 -12.03125 -11.73213 -11.55784 -11.47531 -11.30369 -11.17376 -10.95842 -10.87405 -10.76343 -10.60856 -10.46285 -10.01680 -9.60597 -9.50993 -9.30367 -8.90859 -8.55035 -8.37551 -8.12362 -7.84969 -6.48831 -4.03754 0.59434 1.09954 2.19428 3.01376 3.13763 3.14856 3.20948 3.51964 3.81291 4.02265 4.10681 4.24997 4.39071 4.57762 4.80815 4.94903 5.00342 5.10605 5.15925 5.18749 5.25460 5.37426 5.42504 5.49088 5.53985 5.64460 5.66286 5.78387 5.86329 5.89436 5.94323 6.05022 6.19267 6.25531 6.27523 6.32831 6.35105 6.38915 6.61385 6.77480 6.79954 6.87249 7.02943 7.13289 7.34467 7.79304 8.21101 8.22745 8.80600 8.90661 9.11514 9.66618 10.45178 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.005177 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.004226 B = 5407.731998 C = 6532.358700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.103 4.103 3 C 0.217 3.783 4 N -0.417 5.417 5 C -0.302 4.302 6 H 0.111 0.889 7 C 0.029 3.971 8 N -0.861 5.861 9 Si 0.934 3.066 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.470 3.530 14 O -0.576 6.576 15 C -0.014 4.014 16 C -0.167 4.167 17 C 0.169 3.831 18 C -0.045 4.045 19 C -0.142 4.142 20 C -0.150 4.150 21 N -0.483 5.483 22 C 0.136 3.864 23 C -0.107 4.107 24 C -0.098 4.098 25 C -0.135 4.135 26 C -0.069 4.069 27 C -0.081 4.081 28 H 0.198 0.802 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.272 0.728 32 H 0.142 0.858 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.131 0.869 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.640 9.207 7.039 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.105 4.105 3 C 0.095 3.905 4 N -0.133 5.133 5 C -0.430 4.430 6 H 0.128 0.872 7 C -0.175 4.175 8 N -0.499 5.499 9 Si 0.760 3.240 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.259 3.741 14 O -0.461 6.461 15 C -0.026 4.026 16 C -0.188 4.188 17 C 0.018 3.982 18 C -0.064 4.064 19 C -0.200 4.200 20 C -0.208 4.208 21 N -0.193 5.193 22 C 0.015 3.985 23 C -0.126 4.126 24 C -0.118 4.118 25 C -0.153 4.153 26 C -0.087 4.087 27 C -0.084 4.084 28 H 0.215 0.785 29 H 0.144 0.856 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.160 0.840 33 H 0.107 0.893 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.577 9.832 7.049 12.112 hybrid contribution -0.242 -1.650 -0.988 1.939 sum 0.335 8.182 6.061 10.188 Atomic orbital electron populations 1.24245 0.95379 1.06963 1.02130 1.23020 0.94203 0.94982 0.98251 1.18829 0.84705 1.02864 0.84138 1.43680 1.53710 1.04445 1.11447 1.19919 1.32651 0.84692 1.05740 0.87154 1.25462 0.95145 0.99717 0.97214 1.69962 1.28167 1.24985 1.26763 0.85724 0.78656 0.80195 0.79420 1.18990 1.20348 1.20558 1.17646 0.87091 0.82141 0.87249 1.90656 1.54233 1.84244 1.16955 1.20764 0.93386 0.94547 0.93904 1.22145 1.02074 1.00145 0.94407 1.21203 0.92869 0.88988 0.95185 1.20071 0.93949 1.01581 0.90846 1.21808 1.00224 1.00607 0.97358 1.21951 0.95425 1.01361 1.02042 1.67572 1.07362 1.26783 1.17546 1.18736 0.95926 0.93690 0.90181 1.20668 0.96896 0.97441 0.97591 1.20842 0.98758 0.98311 0.93851 1.20891 1.00058 0.94237 1.00108 1.21244 0.93442 0.98639 0.95392 1.18674 0.98495 0.94675 0.96554 0.78458 0.85558 0.91656 0.91645 0.84022 0.89305 0.92097 0.91939 0.92297 0.91752 0.92295 0.91851 0.85119 0.85715 0.85803 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.79 19.25 29.55 0.57 -5.22 16 2 C -0.10 -2.38 11.45 -37.12 -0.42 -2.80 16 3 C 0.22 4.83 5.01 -6.83 -0.03 4.79 16 4 N -0.42 -10.31 2.57 -119.09 -0.31 -10.62 16 5 C -0.30 -7.94 9.45 -15.05 -0.14 -8.08 16 6 H 0.11 3.03 7.29 -52.49 -0.38 2.65 16 7 C 0.03 0.72 5.22 -17.43 -0.09 0.63 16 8 N -0.86 -21.33 8.48 55.51 0.47 -20.86 16 9 Si 0.93 19.58 29.57 -169.99 -5.03 14.56 16 10 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 13 C 0.47 11.49 6.43 -12.40 -0.08 11.42 16 14 O -0.58 -15.74 15.49 5.27 0.08 -15.65 16 15 C -0.01 -0.30 4.99 -104.34 -0.52 -0.82 16 16 C -0.17 -2.97 6.70 -38.94 -0.26 -3.23 16 17 C 0.17 2.74 5.79 -82.58 -0.48 2.26 16 18 C -0.05 -0.56 3.21 -91.77 -0.29 -0.85 16 19 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 20 C -0.15 -1.61 8.61 37.16 0.32 -1.29 16 21 N -0.48 -8.42 10.19 -7.27 -0.07 -8.50 16 22 C 0.14 2.47 6.61 -84.88 -0.56 1.91 16 23 C -0.11 -1.62 9.99 -39.43 -0.39 -2.01 16 24 C -0.10 -1.33 9.94 -39.95 -0.40 -1.73 16 25 C -0.13 -2.07 9.96 -39.88 -0.40 -2.47 16 26 C -0.07 -1.32 9.26 -39.60 -0.37 -1.68 16 27 C -0.08 -1.63 5.76 -106.51 -0.61 -2.24 16 28 H 0.20 3.51 7.80 -54.09 -0.42 3.09 16 29 H 0.13 2.90 6.13 -51.93 -0.32 2.58 16 30 H 0.07 1.28 4.46 -51.93 -0.23 1.05 16 31 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 32 H 0.14 2.31 5.68 -52.49 -0.30 2.01 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 42 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.14 2.94 6.52 -52.49 -0.34 2.59 16 LS Contribution 360.05 15.07 5.43 5.43 Total: -1.00 -30.47 360.05 -8.52 -38.99 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: -5.27 Total: 9.33 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -3.83 Total: -12.67 kcal Atomic # 7 Polarization: -40.06 SS G_CDS: 0.09 Total: -39.97 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.08 Total: -15.65 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.47 -8.52 -38.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.936 kcal (2) G-P(sol) polarization free energy of solvation -30.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds