Wall clock time and date at job start Tue Mar 31 2020 13:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47098 * 98.42416 * 3 2 1 5 5 C 1.36650 * 119.99930 * 270.32445 * 4 3 2 6 6 H 1.07998 * 120.00288 * 192.98673 * 5 4 3 7 7 C 1.39199 * 120.00143 * 12.97986 * 5 4 3 8 8 N 1.31275 * 119.99800 * 9.75895 * 7 5 4 9 9 Si 1.86800 * 120.00346 * 189.75513 * 7 5 4 10 10 H 1.48501 * 109.47037 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47167 * 120.00486 * 9 7 5 12 12 H 1.48504 * 109.46790 * 240.00190 * 9 7 5 13 13 C 1.34775 * 120.00214 * 90.32139 * 4 3 2 14 14 O 1.21610 * 120.00023 * 185.45118 * 13 4 3 15 15 C 1.47682 * 119.99946 * 5.18616 * 13 4 3 16 16 C 1.39054 * 121.12326 * 55.11029 * 15 13 4 17 17 C 1.39163 * 119.56745 * 180.02562 * 16 15 13 18 18 C 1.50701 * 119.05007 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47249 * 274.99885 * 18 17 16 20 20 C 1.52998 * 109.47407 * 34.99876 * 18 17 16 21 21 N 1.31047 * 121.90016 * 359.97438 * 17 16 15 22 22 C 1.33569 * 121.85277 * 0.02562 * 21 17 16 23 23 C 1.40691 * 120.96488 * 180.02562 * 22 21 17 24 24 C 1.36089 * 119.73882 * 179.15859 * 23 22 21 25 25 C 1.39326 * 121.04367 * 0.82957 * 24 23 22 26 26 C 1.36290 * 120.83140 * 359.43124 * 25 24 23 27 27 C 1.40055 * 119.64113 * 0.02562 * 26 25 24 28 28 H 4.40640 * 5.51493 * 180.02562 * 4 1 2 29 29 H 1.08991 * 109.47135 * 338.41774 * 3 2 1 30 30 H 1.09002 * 109.46669 * 218.41919 * 3 2 1 31 31 H 0.96999 * 120.00150 * 179.97438 * 8 7 5 32 32 H 1.08000 * 120.21780 * 359.97438 * 16 15 13 33 33 H 1.09003 * 109.46992 * 154.99922 * 18 17 16 34 34 H 1.09002 * 109.46893 * 59.99584 * 19 18 17 35 35 H 1.08991 * 109.47389 * 179.97438 * 19 18 17 36 36 H 1.09002 * 109.46919 * 300.00018 * 19 18 17 37 37 H 1.09002 * 109.46762 * 300.00432 * 20 18 17 38 38 H 1.09004 * 109.47052 * 59.99673 * 20 18 17 39 39 H 1.08991 * 109.47377 * 180.02562 * 20 18 17 40 40 H 1.07999 * 120.13446 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.48013 * 180.28539 * 24 23 22 42 42 H 1.08001 * 119.58586 * 179.45600 * 25 24 23 43 43 H 1.07994 * 120.17967 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.2032 -1.3663 5 6 3.3561 -0.8726 -2.1791 6 1 3.9072 -0.7494 -3.0997 7 6 2.8719 -2.1275 -1.8205 8 7 2.0441 -2.2470 -0.8087 9 14 3.4001 -3.6413 -2.7790 10 1 4.3314 -3.2403 -3.8639 11 1 4.0844 -4.5915 -1.8658 12 1 2.2045 -4.2957 -3.3689 13 6 3.3645 1.4506 -1.8217 14 8 3.6741 1.6259 -2.9846 15 6 3.2351 2.6052 -0.9099 16 6 3.9454 2.6611 0.2842 17 6 3.7986 3.7645 1.1195 18 6 4.5745 3.8133 2.4105 19 6 3.8036 3.0615 3.4976 20 6 5.9420 3.1574 2.2089 21 7 3.0059 4.7627 0.8154 22 6 2.2929 4.7778 -0.3140 23 6 1.4479 5.8596 -0.6222 24 6 0.7458 5.8570 -1.7880 25 6 0.8360 4.7894 -2.6786 26 6 1.6402 3.7222 -2.4107 27 6 2.3855 3.6970 -1.2252 28 1 -1.0501 0.0002 0.0000 29 1 3.0097 -0.9547 0.3780 30 1 3.0089 0.8060 0.6386 31 1 1.7064 -3.1213 -0.5590 32 1 4.6061 1.8532 0.5620 33 1 4.7105 4.8514 2.7136 34 1 3.6675 2.0234 3.1944 35 1 4.3649 3.0964 4.4312 36 1 2.8294 3.5288 3.6412 37 1 5.8058 2.1193 1.9058 38 1 6.4911 3.6930 1.4345 39 1 6.5029 3.1923 3.1428 40 1 1.3667 6.6949 0.0575 41 1 0.1019 6.6918 -2.0225 42 1 0.2616 4.8079 -3.5931 43 1 1.7024 2.9005 -3.1087 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490975971.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:36 Heat of formation + Delta-G solvation = 72.075888 kcal Electronic energy + Delta-G solvation = -27294.649205 eV Core-core repulsion = 23692.281887 eV Total energy + Delta-G solvation = -3602.367318 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19829 -40.33582 -38.79429 -37.28005 -35.66661 -34.68341 -33.75940 -33.20936 -31.14359 -30.77712 -28.47412 -28.03535 -27.18622 -25.38420 -24.95141 -23.70696 -22.04824 -20.76652 -19.89309 -18.84905 -18.71672 -18.52804 -17.91590 -17.14430 -16.35807 -16.12212 -15.94799 -15.66151 -15.54209 -15.28444 -15.20716 -14.81089 -14.65578 -14.45909 -14.21040 -13.93464 -13.79209 -13.39307 -13.00654 -12.88039 -12.78464 -12.59937 -12.56615 -12.52093 -12.17547 -12.01496 -11.94344 -11.74665 -11.51584 -11.44814 -11.21209 -10.98686 -10.67672 -10.29221 -10.02882 -9.66484 -9.21482 -8.38293 -6.04523 -0.79306 -0.22241 0.78646 1.31698 1.39520 1.52686 1.69995 1.87148 2.08017 2.25499 2.33533 2.88091 2.96388 3.07492 3.08113 3.56998 3.67489 3.71857 3.86248 3.87027 4.09495 4.12927 4.15203 4.28003 4.31649 4.41077 4.48674 4.59403 4.69274 4.79822 4.85035 4.97706 5.00444 5.01812 5.03408 5.09011 5.20744 5.33400 5.33969 5.35396 5.41026 5.43417 5.48399 5.53644 5.86418 5.89675 6.30580 6.84868 6.96579 7.04986 7.21141 7.76450 8.53913 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.005177 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.004226 B = 5407.731998 C = 6532.358700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.143 4.143 3 C 0.225 3.775 4 N -0.425 5.425 5 C -0.344 4.344 6 H 0.083 0.917 7 C 0.003 3.997 8 N -0.870 5.870 9 Si 0.997 3.003 10 H -0.274 1.274 11 H -0.261 1.261 12 H -0.277 1.277 13 C 0.467 3.533 14 O -0.620 6.620 15 C -0.048 4.048 16 C -0.157 4.157 17 C 0.166 3.834 18 C -0.041 4.041 19 C -0.139 4.139 20 C -0.149 4.149 21 N -0.479 5.479 22 C 0.117 3.883 23 C -0.103 4.103 24 C -0.085 4.085 25 C -0.113 4.113 26 C -0.113 4.113 27 C -0.101 4.101 28 H 0.232 0.768 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.277 0.723 32 H 0.151 0.849 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.162 0.838 41 H 0.176 0.824 42 H 0.152 0.848 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.392 10.934 8.997 14.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.145 4.145 3 C 0.103 3.897 4 N -0.140 5.140 5 C -0.472 4.472 6 H 0.101 0.899 7 C -0.200 4.200 8 N -0.507 5.507 9 Si 0.820 3.180 10 H -0.198 1.198 11 H -0.185 1.185 12 H -0.203 1.203 13 C 0.257 3.743 14 O -0.508 6.508 15 C -0.059 4.059 16 C -0.178 4.178 17 C 0.014 3.986 18 C -0.060 4.060 19 C -0.197 4.197 20 C -0.207 4.207 21 N -0.188 5.188 22 C -0.005 4.005 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.131 4.131 26 C -0.132 4.132 27 C -0.104 4.104 28 H 0.249 0.751 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.168 0.832 33 H 0.119 0.881 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.110 0.890 40 H 0.179 0.821 41 H 0.193 0.807 42 H 0.170 0.830 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.470 11.560 9.047 14.686 hybrid contribution -0.004 -2.043 -1.589 2.588 sum -0.474 9.517 7.457 12.100 Atomic orbital electron populations 1.25119 0.96393 1.05533 1.00569 1.23423 0.95030 0.96344 0.99697 1.18782 0.84809 1.02975 0.83153 1.43785 1.53747 1.04306 1.12207 1.19812 1.34943 0.86362 1.06035 0.89895 1.26152 0.94574 1.01375 0.97935 1.70063 1.27824 1.25721 1.27051 0.84824 0.78130 0.76913 0.78171 1.19844 1.18503 1.20253 1.18202 0.85769 0.83020 0.87297 1.90586 1.55961 1.85166 1.19122 1.20563 0.96269 0.94181 0.94936 1.22328 1.01059 1.01028 0.93343 1.21802 0.92704 0.87876 0.96227 1.20202 0.94104 1.02736 0.88948 1.21811 1.00127 0.99664 0.98103 1.21965 0.94794 1.00568 1.03353 1.67693 1.07168 1.26825 1.17095 1.19170 0.97032 0.94139 0.90114 1.21112 0.95527 0.96961 0.98529 1.21335 0.98194 0.98589 0.92334 1.21297 0.97758 0.92946 1.01106 1.21094 0.96759 0.99780 0.95586 1.18876 0.98895 0.95145 0.97502 0.75111 0.86635 0.89630 0.91198 0.83187 0.88074 0.92979 0.89053 0.93079 0.92481 0.92936 0.89007 0.82086 0.80683 0.83013 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.06 19.25 74.32 1.43 -9.63 16 2 C -0.14 -6.77 11.45 31.13 0.36 -6.42 16 3 C 0.22 10.43 5.01 84.58 0.42 10.85 16 4 N -0.43 -22.43 2.57 -648.94 -1.67 -24.10 16 5 C -0.34 -19.26 9.45 84.17 0.80 -18.47 16 6 H 0.08 4.97 7.29 -2.91 -0.02 4.95 16 7 C 0.00 0.17 5.22 85.01 0.44 0.61 16 8 N -0.87 -43.86 8.48 21.70 0.18 -43.68 16 9 Si 1.00 41.09 29.57 68.60 2.03 43.12 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 12 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 13 C 0.47 24.66 6.43 86.74 0.56 25.22 16 14 O -0.62 -37.04 15.49 -4.06 -0.06 -37.10 16 15 C -0.05 -2.14 4.99 -19.68 -0.10 -2.24 16 16 C -0.16 -5.76 6.70 22.69 0.15 -5.60 16 17 C 0.17 5.26 5.79 42.90 0.25 5.51 16 18 C -0.04 -0.92 3.21 -11.54 -0.04 -0.96 16 19 C -0.14 -2.79 9.18 71.98 0.66 -2.13 16 20 C -0.15 -2.95 8.61 71.98 0.62 -2.33 16 21 N -0.48 -16.08 10.19 -176.92 -1.80 -17.88 16 22 C 0.12 4.14 6.61 40.33 0.27 4.41 16 23 C -0.10 -2.78 9.99 22.37 0.22 -2.56 16 24 C -0.09 -1.99 9.94 22.03 0.22 -1.77 16 25 C -0.11 -3.32 9.96 22.08 0.22 -3.10 16 26 C -0.11 -4.55 9.26 22.26 0.21 -4.34 16 27 C -0.10 -4.21 5.76 -21.09 -0.12 -4.34 16 28 H 0.23 7.82 7.80 -4.41 -0.03 7.78 16 29 H 0.12 5.53 6.13 -2.39 -0.01 5.52 16 30 H 0.09 3.51 4.46 -2.39 -0.01 3.50 16 31 H 0.28 13.11 8.31 -92.71 -0.77 12.34 16 32 H 0.15 5.08 5.68 -2.91 -0.02 5.06 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.21 6.44 -2.39 -0.02 1.19 16 38 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 40 H 0.16 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 42 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 43 H 0.10 4.69 6.52 -2.91 -0.02 4.67 16 Total: -1.00 -71.74 360.05 6.27 -65.47 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 1.03 Total: 31.46 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 6.57 Total: -17.29 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -3.29 Total: -85.66 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.06 Total: -37.10 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -71.74 6.27 -65.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490975971.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.543 kcal (2) G-P(sol) polarization free energy of solvation -71.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds