Wall clock time and date at job start Tue Mar 31 2020 13:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47494 * 2 1 4 4 C 1.52992 * 109.47350 * 184.60108 * 3 2 1 5 5 C 1.53004 * 109.46741 * 64.60033 * 3 2 1 6 6 N 1.46499 * 109.47063 * 304.60315 * 3 2 1 7 7 C 1.46506 * 119.99884 * 119.62541 * 6 3 2 8 8 C 1.50698 * 109.47363 * 272.46297 * 7 6 3 9 9 H 1.07997 * 120.00133 * 4.52486 * 8 7 6 10 10 C 1.37873 * 119.99925 * 184.52371 * 8 7 6 11 11 N 1.31520 * 119.99938 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00022 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47220 * 90.00043 * 12 10 8 14 14 H 1.48500 * 109.47295 * 210.00215 * 12 10 8 15 15 H 1.48497 * 109.46941 * 329.99927 * 12 10 8 16 16 C 1.34771 * 120.00275 * 299.63018 * 6 3 2 17 17 O 1.21775 * 120.00282 * 175.03500 * 16 6 3 18 18 C 1.41546 * 119.99915 * 355.03431 * 16 6 3 19 19 C 1.35562 * 120.00171 * 192.42435 * 18 16 6 20 20 C 1.41724 * 119.99839 * 29.50375 * 19 18 16 21 21 C 1.37069 * 126.19081 * 201.98782 * 20 19 18 22 22 N 1.30956 * 113.84791 * 179.68992 * 21 20 19 23 23 C 1.29360 * 117.49185 * 0.26863 * 22 21 20 24 24 C 1.50702 * 124.67337 * 179.97438 * 23 22 21 25 25 S 1.70918 * 110.65251 * 0.02562 * 23 22 21 26 26 H 1.08999 * 109.46891 * 68.43101 * 1 2 3 27 27 H 1.08990 * 109.47377 * 188.43323 * 1 2 3 28 28 H 1.09000 * 109.46884 * 308.43522 * 1 2 3 29 29 H 1.09001 * 109.47247 * 240.00363 * 2 1 3 30 30 H 1.09002 * 109.47265 * 120.00153 * 2 1 3 31 31 H 1.08996 * 109.47261 * 186.59199 * 4 3 2 32 32 H 1.08998 * 109.47585 * 306.59002 * 4 3 2 33 33 H 1.09005 * 109.47009 * 66.58993 * 4 3 2 34 34 H 1.08995 * 109.47263 * 301.73986 * 5 3 2 35 35 H 1.09008 * 109.46669 * 61.73630 * 5 3 2 36 36 H 1.08998 * 109.46771 * 181.73422 * 5 3 2 37 37 H 1.09002 * 109.46825 * 32.46340 * 7 6 3 38 38 H 1.08995 * 109.46965 * 152.45757 * 7 6 3 39 39 H 0.97002 * 119.99986 * 179.97438 * 11 10 8 40 40 H 1.08001 * 120.00006 * 12.43213 * 18 16 6 41 41 H 1.08000 * 120.00303 * 209.49927 * 19 18 16 42 42 H 1.07995 * 123.07485 * 359.95534 * 21 20 19 43 43 H 1.08995 * 109.47250 * 90.02909 * 24 23 22 44 44 H 1.09003 * 109.46839 * 210.02450 * 24 23 22 45 45 H 1.09001 * 109.47088 * 330.02073 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5656 1.4440 -0.1157 5 6 1.6267 2.1296 1.3031 6 7 1.4634 2.1644 -1.1369 7 6 0.6282 3.3459 -0.9069 8 6 -0.8031 2.9184 -0.7079 9 1 -1.0535 1.8684 -0.6756 10 6 -1.7928 3.8678 -0.5669 11 7 -1.4879 5.1466 -0.6066 12 14 -3.5671 3.3379 -0.3209 13 1 -3.8438 3.1934 1.1309 14 1 -4.4743 4.3622 -0.8981 15 1 -3.7938 2.0370 -1.0000 16 6 1.7010 1.7416 -2.3943 17 8 1.1497 2.2856 -3.3340 18 6 2.5914 0.6652 -2.6226 19 6 3.0270 0.4007 -3.8788 20 6 3.1468 1.4507 -4.8231 21 6 3.1553 1.3155 -6.1871 22 7 3.2722 2.4499 -6.8308 23 6 3.3684 3.5298 -6.1252 24 6 3.5094 4.9173 -6.6962 25 16 3.3149 3.1660 -4.4560 26 1 -0.3633 0.3778 -0.9557 27 1 -0.3633 -1.0164 0.1507 28 1 -0.3633 0.6388 0.8050 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.9379 2.4617 0.0017 32 1 3.9898 0.8100 0.6629 33 1 3.8562 1.0614 -1.0942 34 1 0.5415 2.1012 1.4005 35 1 2.0810 1.6106 2.1473 36 1 1.9634 3.1661 1.2899 37 1 0.9778 3.8704 -0.0176 38 1 0.6927 4.0098 -1.7690 39 1 -2.1843 5.8146 -0.5078 40 1 2.9237 0.0546 -1.7961 41 1 3.2828 -0.6102 -4.1600 42 1 3.0689 0.3613 -6.6853 43 1 2.5207 5.3511 -6.8454 44 1 4.0781 5.5388 -6.0044 45 1 4.0316 4.8657 -7.6515 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491971999.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:35 Heat of formation + Delta-G solvation = 58.555880 kcal Electronic energy + Delta-G solvation = -26452.937352 eV Core-core repulsion = 22985.427713 eV Total energy + Delta-G solvation = -3467.509638 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.15614 -39.24686 -36.99102 -34.33718 -32.97889 -31.67495 -31.32828 -30.01677 -28.97286 -27.01996 -26.25611 -24.06083 -23.18280 -23.09643 -21.82537 -20.20466 -19.47550 -17.91661 -17.35961 -16.67474 -15.78316 -15.46078 -15.02934 -14.74252 -14.45308 -14.39276 -14.01289 -13.79893 -13.55804 -13.17736 -13.01118 -12.75712 -12.64392 -12.45290 -12.25168 -12.15701 -11.95020 -11.78862 -11.35093 -11.19014 -11.10213 -11.03306 -10.88664 -10.71905 -10.47732 -10.35143 -10.11648 -9.93736 -9.76918 -9.35675 -9.25625 -8.96351 -8.45396 -8.36938 -7.72692 -7.41447 -5.99110 -4.01762 0.26198 1.69793 1.95847 2.17470 3.16129 3.30391 3.38377 3.41796 3.93202 4.09817 4.39894 4.48114 5.01028 5.14524 5.15679 5.21378 5.31380 5.35798 5.38179 5.46695 5.52742 5.56795 5.63729 5.71113 5.88075 5.90656 5.91910 6.03785 6.12581 6.15921 6.23903 6.32089 6.36838 6.39246 6.52432 6.56699 6.59735 6.85320 7.07178 7.19608 7.52780 7.66484 7.99649 8.00045 8.31124 8.50430 8.98459 9.16441 9.62662 11.08818 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012405 B = 0.005144 C = 0.004226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.558665 B = 5441.769163 C = 6623.294961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.165 3.835 4 C -0.175 4.175 5 C -0.149 4.149 6 N -0.576 5.576 7 C 0.241 3.759 8 C -0.525 4.525 9 H 0.074 0.926 10 C 0.061 3.939 11 N -0.896 5.896 12 Si 0.889 3.111 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.275 1.275 16 C 0.530 3.470 17 O -0.534 6.534 18 C -0.231 4.231 19 C -0.007 4.007 20 C -0.216 4.216 21 C 0.060 3.940 22 N -0.487 5.487 23 C 0.005 3.995 24 C -0.075 4.075 25 S 0.241 5.759 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.034 0.966 38 H 0.043 0.957 39 H 0.260 0.740 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.172 0.828 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.490 -7.633 -2.045 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.079 3.921 4 C -0.233 4.233 5 C -0.206 4.206 6 N -0.307 5.307 7 C 0.122 3.878 8 C -0.564 4.564 9 H 0.092 0.908 10 C -0.141 4.141 11 N -0.535 5.535 12 Si 0.717 3.283 13 H -0.208 1.208 14 H -0.213 1.213 15 H -0.200 1.200 16 C 0.319 3.681 17 O -0.414 6.414 18 C -0.254 4.254 19 C -0.030 4.030 20 C -0.338 4.338 21 C -0.099 4.099 22 N -0.202 5.202 23 C -0.267 4.267 24 C -0.135 4.135 25 S 0.501 5.499 26 H 0.090 0.910 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.189 0.811 43 H 0.103 0.897 44 H 0.096 0.904 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.179 -6.327 -2.165 14.779 hybrid contribution -1.380 -1.255 -0.161 1.872 sum 11.799 -7.582 -2.326 14.217 Atomic orbital electron populations 1.22022 0.94589 1.00012 1.04381 1.22226 0.97930 0.95866 1.01643 1.20342 0.91638 0.91905 0.88173 1.22699 0.95729 1.02585 1.02288 1.22107 1.04298 1.00179 0.94061 1.48335 1.48897 1.29611 1.03842 1.19344 0.88783 0.81944 0.97705 1.21809 0.91909 0.93973 1.48720 0.90818 1.24921 0.98708 0.94856 0.95566 1.69937 1.33219 0.99805 1.50546 0.86641 0.85163 0.78454 0.78039 1.20775 1.21303 1.19978 1.16873 0.83753 0.83691 0.83769 1.90870 1.51766 1.57287 1.41525 1.23158 1.00943 1.03644 0.97700 1.20411 0.95671 0.95974 0.90902 1.23813 1.14340 0.97892 0.97725 1.22333 1.01506 0.96916 0.89121 1.65924 1.17083 0.97729 1.39514 1.27228 1.04649 0.99224 0.95590 1.20384 1.03582 0.88095 1.01467 1.84120 1.59923 0.99788 1.06029 0.91012 0.94395 0.91289 0.91418 0.91834 0.92132 0.91959 0.91270 0.89541 0.92992 0.91937 0.94788 0.93901 0.92980 0.83014 0.84321 0.81073 0.89722 0.90443 0.89795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 8.08 37.16 0.30 -2.28 16 2 C -0.14 -1.97 4.63 -26.73 -0.12 -2.09 16 3 C 0.17 2.60 0.73 -131.82 -0.10 2.51 16 4 C -0.18 -2.24 8.23 37.15 0.31 -1.94 16 5 C -0.15 -2.40 7.09 37.16 0.26 -2.13 16 6 N -0.58 -11.51 1.66 -163.57 -0.27 -11.78 16 7 C 0.24 5.95 4.54 -5.19 -0.02 5.93 16 8 C -0.53 -13.97 8.07 -34.44 -0.28 -14.25 16 9 H 0.07 1.91 3.92 -52.49 -0.21 1.71 16 10 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 11 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 12 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 15 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 16 C 0.53 10.63 5.77 -15.00 -0.09 10.54 16 17 O -0.53 -12.88 12.67 5.12 0.06 -12.81 16 18 C -0.23 -3.56 6.35 -39.28 -0.25 -3.81 16 19 C -0.01 -0.10 9.77 -39.21 -0.38 -0.49 16 20 C -0.22 -3.44 5.14 -38.68 -0.20 -3.64 16 21 C 0.06 0.91 11.38 -18.35 -0.21 0.71 16 22 N -0.49 -8.10 10.50 -11.18 -0.12 -8.21 16 23 C 0.01 0.08 7.37 -13.32 -0.10 -0.02 16 24 C -0.08 -0.89 10.46 36.01 0.38 -0.52 16 25 S 0.24 4.03 19.47 -107.50 -2.09 1.94 16 26 H 0.07 1.46 5.86 -51.93 -0.30 1.16 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 1.24 5.66 -51.93 -0.29 0.95 16 29 H 0.07 0.90 4.85 -51.93 -0.25 0.65 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.86 4.40 -51.93 -0.23 0.63 16 34 H 0.09 1.61 5.23 -51.93 -0.27 1.34 16 35 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.06 1.06 6.77 -51.93 -0.35 0.71 16 37 H 0.03 0.85 5.82 -51.93 -0.30 0.55 16 38 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.15 1.93 3.39 -52.49 -0.18 1.76 16 41 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.17 2.08 8.06 -52.49 -0.42 1.65 16 43 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -32.76 354.38 -8.09 -40.85 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.14 Total: 3.30 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.60 Total: -9.88 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: 0.35 Total: -45.34 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.06 Total: -12.81 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 4.03 SS G_CDS: -2.09 Total: 1.94 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.76 -8.09 -40.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491971999.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.408 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds