Wall clock time and date at job start Tue Mar 31 2020 13:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.53005 * 109.47305 * 300.30101 * 3 2 1 5 5 C 1.53000 * 109.46962 * 180.30348 * 3 2 1 6 6 N 1.46496 * 109.47464 * 60.30442 * 3 2 1 7 7 C 1.46500 * 120.00206 * 231.13218 * 6 3 2 8 8 C 1.50695 * 109.47086 * 265.79518 * 7 6 3 9 9 H 1.08005 * 119.99834 * 4.97115 * 8 7 6 10 10 C 1.37883 * 120.00065 * 184.97102 * 8 7 6 11 11 N 1.31508 * 119.99683 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99891 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47427 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47279 * 120.00207 * 12 10 8 15 15 H 1.48497 * 109.47230 * 239.99943 * 12 10 8 16 16 C 1.34771 * 119.99894 * 51.12711 * 6 3 2 17 17 O 1.21782 * 120.00218 * 187.02344 * 16 6 3 18 18 C 1.41552 * 120.00364 * 7.02252 * 16 6 3 19 19 C 1.35557 * 120.00030 * 186.91294 * 18 16 6 20 20 C 1.41717 * 120.00600 * 24.52879 * 19 18 16 21 21 S 1.76222 * 126.18849 * 21.65850 * 20 19 18 22 22 C 1.70915 * 90.39063 * 180.02562 * 21 20 19 23 23 N 1.29362 * 110.64990 * 359.97438 * 22 21 20 24 24 C 1.30957 * 117.49231 * 359.70950 * 23 22 21 25 25 C 1.50702 * 123.07687 * 180.34092 * 24 23 22 26 26 H 1.09000 * 109.47266 * 305.32257 * 1 2 3 27 27 H 1.09007 * 109.46889 * 65.32470 * 1 2 3 28 28 H 1.09007 * 109.47145 * 185.31886 * 1 2 3 29 29 H 1.08999 * 109.47042 * 239.99958 * 2 1 3 30 30 H 1.09000 * 109.47165 * 119.99727 * 2 1 3 31 31 H 1.08994 * 109.46984 * 184.49356 * 4 3 2 32 32 H 1.09004 * 109.46966 * 304.48998 * 4 3 2 33 33 H 1.08996 * 109.46927 * 64.48831 * 4 3 2 34 34 H 1.09000 * 109.46974 * 303.79125 * 5 3 2 35 35 H 1.09003 * 109.47181 * 63.79208 * 5 3 2 36 36 H 1.09000 * 109.47264 * 183.79447 * 5 3 2 37 37 H 1.08999 * 109.46885 * 25.79599 * 7 6 3 38 38 H 1.09001 * 109.47173 * 145.79473 * 7 6 3 39 39 H 0.97001 * 119.99668 * 180.02562 * 11 10 8 40 40 H 1.07997 * 119.99390 * 6.91029 * 18 16 6 41 41 H 1.08005 * 119.99508 * 204.53028 * 19 18 16 42 42 H 1.07991 * 124.67554 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47401 * 270.19667 * 25 24 23 44 44 H 1.09003 * 109.46785 * 30.20101 * 25 24 23 45 45 H 1.09000 * 109.47135 * 150.19110 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5237 2.1660 -1.2455 5 6 3.5699 1.4425 -0.0076 6 7 1.5576 2.1310 1.1998 7 6 0.8816 3.4252 1.0798 8 6 1.8846 4.5348 1.2631 9 1 2.9338 4.3020 1.3700 10 6 1.4629 5.8471 1.2943 11 7 0.1852 6.1304 1.1645 12 14 2.7061 7.2225 1.5222 13 1 4.0682 6.6434 1.6440 14 1 2.6586 8.1321 0.3493 15 1 2.3801 7.9854 2.7537 16 6 1.7357 1.5738 2.4139 17 8 1.2250 2.0797 3.3969 18 6 2.5165 0.4006 2.5467 19 6 2.5816 -0.2388 3.7402 20 6 1.5321 -0.0917 4.6811 21 16 -0.1222 0.4010 4.3261 22 6 -0.5273 0.2752 5.9818 23 7 0.4988 -0.0980 6.6755 24 6 1.6184 -0.3129 6.0311 25 6 2.8870 -0.7579 6.7121 26 1 -0.3634 0.5942 0.8385 27 1 -0.3633 0.4291 -0.9339 28 1 -0.3634 -1.0233 0.0953 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9511 3.1678 -1.2869 32 1 1.8155 1.6093 -2.1361 33 1 0.4369 2.2360 -1.2006 34 1 3.9375 0.8695 0.8436 35 1 3.9287 0.9903 -0.9323 36 1 3.9336 2.4678 0.0604 37 1 0.4257 3.5068 0.0931 38 1 0.1089 3.5038 1.8446 39 1 -0.1114 7.0537 1.1861 40 1 3.0603 0.0150 1.6970 41 1 3.4333 -0.8604 3.9740 42 1 -1.5054 0.4784 6.3921 43 1 3.4604 0.1166 7.0195 44 1 2.6382 -1.3560 7.5888 45 1 3.4799 -1.3565 6.0205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491996492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:39 Heat of formation + Delta-G solvation = 56.395598 kcal Electronic energy + Delta-G solvation = -26536.345486 eV Core-core repulsion = 23068.742171 eV Total energy + Delta-G solvation = -3467.603315 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.22550 -39.31314 -37.05517 -34.28783 -33.06599 -31.69789 -31.08590 -30.02641 -28.73150 -26.67935 -26.45649 -24.68707 -23.49319 -23.08395 -21.76169 -20.15872 -19.16559 -17.89035 -17.30959 -16.50580 -16.15232 -15.64074 -15.05342 -14.71712 -14.64346 -14.27873 -14.20078 -13.72043 -13.32238 -13.15279 -13.03961 -12.77913 -12.55659 -12.36019 -12.21703 -12.19489 -12.02054 -11.89762 -11.45542 -11.35189 -11.13991 -11.09502 -10.93963 -10.74322 -10.55225 -10.46086 -10.16178 -9.97254 -9.90746 -9.58676 -9.21256 -9.04917 -8.41262 -8.27397 -7.61710 -7.33564 -6.03419 -4.07212 0.30968 1.86455 2.16289 2.26959 3.18009 3.28737 3.37156 3.40250 3.89120 4.09065 4.45281 4.53240 4.94863 5.10899 5.15373 5.22986 5.27405 5.30913 5.35105 5.41006 5.52037 5.63442 5.70821 5.76973 5.81634 5.84510 5.96034 5.96405 6.04783 6.09018 6.14349 6.28218 6.31555 6.38499 6.42157 6.49800 6.60988 6.66230 6.78330 7.14570 7.48972 7.60055 7.93753 8.09484 8.25263 8.45021 8.92175 9.10987 9.57578 11.04116 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.005269 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.688930 B = 5312.681011 C = 6383.774088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.148 4.148 3 C 0.165 3.835 4 C -0.147 4.147 5 C -0.170 4.170 6 N -0.572 5.572 7 C 0.239 3.761 8 C -0.519 4.519 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.893 3.107 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.284 1.284 16 C 0.531 3.469 17 O -0.533 6.533 18 C -0.238 4.238 19 C 0.001 3.999 20 C -0.235 4.235 21 S 0.293 5.707 22 C -0.043 4.043 23 N -0.488 5.488 24 C 0.084 3.916 25 C -0.075 4.075 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.040 0.960 38 H 0.044 0.956 39 H 0.261 0.739 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.188 0.812 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.815 -16.500 -0.489 16.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.205 4.205 5 C -0.228 4.228 6 N -0.302 5.302 7 C 0.120 3.880 8 C -0.558 4.558 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.721 3.279 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.210 1.210 16 C 0.322 3.678 17 O -0.416 6.416 18 C -0.261 4.261 19 C -0.022 4.022 20 C -0.358 4.358 21 S 0.553 5.447 22 C -0.334 4.334 23 N -0.204 5.204 24 C -0.056 4.056 25 C -0.134 4.134 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.168 0.832 41 H 0.153 0.847 42 H 0.205 0.795 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.594 -15.782 -0.357 15.866 hybrid contribution 1.526 0.896 0.516 1.843 sum 3.120 -14.886 0.158 15.210 Atomic orbital electron populations 1.21757 0.95431 1.00951 1.02625 1.22437 0.97182 0.96302 1.02599 1.20347 0.93418 0.91427 0.86889 1.22070 1.02034 1.01559 0.94792 1.22530 0.95341 1.03520 1.01394 1.48343 1.55693 1.22054 1.04064 1.19406 0.93152 0.77146 0.98326 1.21440 0.93877 0.90804 1.49647 0.92599 1.24896 0.95192 0.98641 0.95224 1.69931 1.13812 1.19140 1.50414 0.86524 0.81565 0.82109 0.77710 1.19893 1.21029 1.20982 1.16927 0.81426 0.85664 0.83824 1.90790 1.49516 1.64622 1.36654 1.23012 1.06725 0.97890 0.98469 1.20391 0.93984 0.96988 0.90798 1.23583 0.99795 1.14770 0.97602 1.84118 1.00347 1.52888 1.07297 1.28629 1.02069 1.04364 0.98306 1.65855 0.99124 1.16056 1.39324 1.20870 0.94897 1.00820 0.89027 1.20299 0.91759 1.01327 1.00040 0.92140 0.92496 0.93330 0.91321 0.90349 0.90455 0.92706 0.91635 0.91976 0.92329 0.91117 0.94223 0.93844 0.92882 0.83242 0.84673 0.79521 0.90732 0.90950 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.30 37.16 0.35 -1.63 16 2 C -0.15 -1.86 4.50 -26.73 -0.12 -1.98 16 3 C 0.17 2.56 0.71 -131.82 -0.09 2.47 16 4 C -0.15 -2.28 6.64 37.16 0.25 -2.04 16 5 C -0.17 -2.40 8.40 37.16 0.31 -2.09 16 6 N -0.57 -11.38 1.63 -163.57 -0.27 -11.65 16 7 C 0.24 5.90 4.58 -5.20 -0.02 5.88 16 8 C -0.52 -14.23 9.34 -34.44 -0.32 -14.55 16 9 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 12 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 16 C 0.53 10.60 5.85 -15.00 -0.09 10.52 16 17 O -0.53 -12.55 11.44 5.12 0.06 -12.50 16 18 C -0.24 -3.69 6.53 -39.28 -0.26 -3.94 16 19 C 0.00 0.01 9.39 -39.21 -0.37 -0.36 16 20 C -0.23 -3.83 5.24 -38.68 -0.20 -4.03 16 21 S 0.29 4.87 18.69 -107.50 -2.01 2.86 16 22 C -0.04 -0.67 12.20 51.72 0.63 -0.04 16 23 N -0.49 -8.29 10.49 -11.23 -0.12 -8.40 16 24 C 0.08 1.34 6.85 -83.39 -0.57 0.77 16 25 C -0.08 -0.89 10.09 36.01 0.36 -0.53 16 26 H 0.06 0.95 7.21 -51.93 -0.37 0.58 16 27 H 0.06 0.72 6.83 -51.93 -0.35 0.37 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.96 4.26 -51.93 -0.22 0.74 16 31 H 0.08 1.40 7.67 -51.93 -0.40 1.00 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.06 5.74 -51.93 -0.30 0.76 16 34 H 0.06 0.81 5.00 -51.93 -0.26 0.55 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.98 5.42 -51.93 -0.28 0.70 16 38 H 0.04 1.24 7.46 -51.93 -0.39 0.85 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 40 H 0.15 1.92 3.31 -52.49 -0.17 1.75 16 41 H 0.14 1.42 7.16 -52.48 -0.38 1.04 16 42 H 0.19 2.31 8.06 -52.49 -0.42 1.89 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.67 7.06 -51.93 -0.37 0.31 16 LS Contribution 359.80 15.07 5.42 5.42 Total: -1.00 -33.02 359.80 -7.86 -40.88 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.42 Total: 1.85 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: -0.24 Total: -9.90 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 0.35 Total: -45.44 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -2.01 Total: 2.86 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.02 -7.86 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491996492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.279 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds