Wall clock time and date at job start Tue Mar 31 2020 13:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46859 * 2 1 4 4 C 1.53005 * 109.47305 * 300.30101 * 3 2 1 5 5 C 1.53000 * 109.46962 * 180.30348 * 3 2 1 6 6 N 1.46496 * 109.47464 * 60.30442 * 3 2 1 7 7 C 1.46500 * 120.00206 * 231.13218 * 6 3 2 8 8 C 1.50695 * 109.47086 * 265.79518 * 7 6 3 9 9 H 1.08005 * 119.99834 * 4.97115 * 8 7 6 10 10 C 1.37883 * 120.00065 * 184.97102 * 8 7 6 11 11 N 1.31508 * 119.99683 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99891 * 179.97438 * 10 8 7 13 13 H 1.48503 * 109.47427 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47279 * 120.00207 * 12 10 8 15 15 H 1.48497 * 109.47230 * 239.99943 * 12 10 8 16 16 C 1.34771 * 119.99894 * 51.12711 * 6 3 2 17 17 O 1.21782 * 120.00218 * 187.02344 * 16 6 3 18 18 C 1.41552 * 120.00364 * 7.02252 * 16 6 3 19 19 C 1.35557 * 120.00030 * 186.91294 * 18 16 6 20 20 C 1.41717 * 120.00600 * 24.52879 * 19 18 16 21 21 S 1.76222 * 126.18849 * 21.65850 * 20 19 18 22 22 C 1.70915 * 90.39063 * 180.02562 * 21 20 19 23 23 N 1.29362 * 110.64990 * 359.97438 * 22 21 20 24 24 C 1.30957 * 117.49231 * 359.70950 * 23 22 21 25 25 C 1.50702 * 123.07687 * 180.34092 * 24 23 22 26 26 H 1.09000 * 109.47266 * 305.32257 * 1 2 3 27 27 H 1.09007 * 109.46889 * 65.32470 * 1 2 3 28 28 H 1.09007 * 109.47145 * 185.31886 * 1 2 3 29 29 H 1.08999 * 109.47042 * 239.99958 * 2 1 3 30 30 H 1.09000 * 109.47165 * 119.99727 * 2 1 3 31 31 H 1.08994 * 109.46984 * 184.49356 * 4 3 2 32 32 H 1.09004 * 109.46966 * 304.48998 * 4 3 2 33 33 H 1.08996 * 109.46927 * 64.48831 * 4 3 2 34 34 H 1.09000 * 109.46974 * 303.79125 * 5 3 2 35 35 H 1.09003 * 109.47181 * 63.79208 * 5 3 2 36 36 H 1.09000 * 109.47264 * 183.79447 * 5 3 2 37 37 H 1.08999 * 109.46885 * 25.79599 * 7 6 3 38 38 H 1.09001 * 109.47173 * 145.79473 * 7 6 3 39 39 H 0.97001 * 119.99668 * 180.02562 * 11 10 8 40 40 H 1.07997 * 119.99390 * 6.91029 * 18 16 6 41 41 H 1.08005 * 119.99508 * 204.53028 * 19 18 16 42 42 H 1.07991 * 124.67554 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.47401 * 270.19667 * 25 24 23 44 44 H 1.09003 * 109.46785 * 30.20101 * 25 24 23 45 45 H 1.09000 * 109.47135 * 150.19110 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5237 2.1660 -1.2455 5 6 3.5699 1.4425 -0.0076 6 7 1.5576 2.1310 1.1998 7 6 0.8816 3.4252 1.0798 8 6 1.8846 4.5348 1.2631 9 1 2.9338 4.3020 1.3700 10 6 1.4629 5.8471 1.2943 11 7 0.1852 6.1304 1.1645 12 14 2.7061 7.2225 1.5222 13 1 4.0682 6.6434 1.6440 14 1 2.6586 8.1321 0.3493 15 1 2.3801 7.9854 2.7537 16 6 1.7357 1.5738 2.4139 17 8 1.2250 2.0797 3.3969 18 6 2.5165 0.4006 2.5467 19 6 2.5816 -0.2388 3.7402 20 6 1.5321 -0.0917 4.6811 21 16 -0.1222 0.4010 4.3261 22 6 -0.5273 0.2752 5.9818 23 7 0.4988 -0.0980 6.6755 24 6 1.6184 -0.3129 6.0311 25 6 2.8870 -0.7579 6.7121 26 1 -0.3634 0.5942 0.8385 27 1 -0.3633 0.4291 -0.9339 28 1 -0.3634 -1.0233 0.0953 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9511 3.1678 -1.2869 32 1 1.8155 1.6093 -2.1361 33 1 0.4369 2.2360 -1.2006 34 1 3.9375 0.8695 0.8436 35 1 3.9287 0.9903 -0.9323 36 1 3.9336 2.4678 0.0604 37 1 0.4257 3.5068 0.0931 38 1 0.1089 3.5038 1.8446 39 1 -0.1114 7.0537 1.1861 40 1 3.0603 0.0150 1.6970 41 1 3.4333 -0.8604 3.9740 42 1 -1.5054 0.4784 6.3921 43 1 3.4604 0.1166 7.0195 44 1 2.6382 -1.3560 7.5888 45 1 3.4799 -1.3565 6.0205 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491996492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:38 Heat of formation + Delta-G solvation = 36.526219 kcal Electronic energy + Delta-G solvation = -26537.207086 eV Core-core repulsion = 23068.742171 eV Total energy + Delta-G solvation = -3468.464916 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.62113 -40.53864 -38.44493 -35.75660 -34.84898 -33.30737 -32.24048 -31.18397 -30.18149 -28.26083 -27.74627 -25.90765 -25.06572 -24.30386 -23.30671 -21.45907 -20.41184 -19.20060 -18.59840 -18.56675 -17.52626 -17.06435 -16.52895 -16.22397 -15.94387 -15.86019 -15.43837 -15.00478 -14.54953 -14.46551 -14.32588 -14.18053 -13.92172 -13.66739 -13.50128 -13.38924 -13.24401 -13.08218 -12.92593 -12.81701 -12.67453 -12.54574 -12.27525 -12.23142 -12.13118 -11.99857 -11.70577 -11.46642 -11.30142 -11.03403 -10.61520 -10.59076 -10.45794 -9.67229 -8.88501 -8.86021 -8.17408 -6.31106 -0.91072 0.65236 0.93693 1.04562 1.32198 1.34959 1.45532 1.94454 2.30386 2.52231 2.67795 3.10768 3.42675 3.81160 3.96319 4.03567 4.09322 4.18336 4.23376 4.29980 4.46225 4.57580 4.65571 4.76442 4.80262 4.82131 4.85345 4.92935 4.96872 5.00160 5.05149 5.09792 5.18170 5.23260 5.25160 5.28716 5.39283 5.40721 5.50496 5.54577 5.56461 5.67778 6.00462 6.15287 6.76306 6.85498 6.95994 7.33926 7.60899 8.87335 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011744 B = 0.005269 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.688930 B = 5312.681011 C = 6383.774088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.155 3.845 4 C -0.143 4.143 5 C -0.165 4.165 6 N -0.578 5.578 7 C 0.261 3.739 8 C -0.525 4.525 9 H 0.048 0.952 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.956 3.044 13 H -0.269 1.269 14 H -0.270 1.270 15 H -0.286 1.286 16 C 0.524 3.476 17 O -0.582 6.582 18 C -0.254 4.254 19 C 0.022 3.978 20 C -0.251 4.251 21 S 0.249 5.751 22 C -0.039 4.039 23 N -0.509 5.509 24 C 0.078 3.922 25 C -0.075 4.075 26 H 0.022 0.978 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.036 0.964 37 H 0.034 0.966 38 H -0.007 1.007 39 H 0.264 0.736 40 H 0.182 0.818 41 H 0.185 0.815 42 H 0.212 0.788 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -19.017 -0.976 19.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.070 3.930 4 C -0.201 4.201 5 C -0.223 4.223 6 N -0.307 5.307 7 C 0.139 3.861 8 C -0.564 4.564 9 H 0.066 0.934 10 C -0.189 4.189 11 N -0.568 5.568 12 Si 0.781 3.219 13 H -0.193 1.193 14 H -0.195 1.195 15 H -0.213 1.213 16 C 0.317 3.683 17 O -0.468 6.468 18 C -0.277 4.277 19 C 0.000 4.000 20 C -0.374 4.374 21 S 0.510 5.490 22 C -0.330 4.330 23 N -0.225 5.225 24 C -0.062 4.062 25 C -0.134 4.134 26 H 0.041 0.959 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.125 0.875 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.113 0.887 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.011 0.989 39 H 0.073 0.927 40 H 0.199 0.801 41 H 0.202 0.798 42 H 0.229 0.771 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 4.286 -18.332 -0.876 18.847 hybrid contribution 0.605 1.640 0.751 1.903 sum 4.892 -16.692 -0.126 17.394 Atomic orbital electron populations 1.21739 0.96331 1.01550 1.01061 1.22410 0.96307 0.94110 1.04817 1.20758 0.94687 0.92795 0.84711 1.22025 1.00747 1.00450 0.96835 1.22488 0.93716 1.02070 1.03999 1.48284 1.55680 1.20611 1.06082 1.18759 0.91818 0.79545 0.95939 1.21694 0.93841 0.91900 1.48978 0.93393 1.25726 0.96955 1.01151 0.95087 1.70050 1.15563 1.19690 1.51521 0.85542 0.79338 0.79205 0.77786 1.19300 1.19526 1.21266 1.17656 0.80930 0.86810 0.82921 1.90773 1.51516 1.66389 1.38168 1.22928 1.07220 0.97175 1.00339 1.20941 0.93882 0.95983 0.89185 1.23897 0.99718 1.15288 0.98457 1.84339 1.02448 1.53640 1.08574 1.29065 1.03013 1.03281 0.97605 1.65948 0.99866 1.16945 1.39791 1.21571 0.95816 0.99687 0.89148 1.20475 0.90098 1.01864 1.00965 0.95854 0.92442 0.91133 0.87543 0.89434 0.93834 0.88702 0.93303 0.90531 0.88616 0.94448 0.94861 0.98908 0.92742 0.80130 0.79788 0.77110 0.90642 0.90018 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 9.30 71.98 0.67 -3.12 16 2 C -0.14 -3.10 4.50 30.59 0.14 -2.96 16 3 C 0.15 4.62 0.71 3.61 0.00 4.62 16 4 C -0.14 -4.40 6.64 71.98 0.48 -3.92 16 5 C -0.17 -4.24 8.40 71.98 0.60 -3.64 16 6 N -0.58 -23.67 1.63 -789.60 -1.29 -24.96 16 7 C 0.26 13.75 4.58 85.63 0.39 14.14 16 8 C -0.53 -30.08 9.34 25.60 0.24 -29.84 16 9 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 10 C 0.01 0.54 5.46 84.66 0.46 1.00 16 11 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 12 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 16 C 0.52 21.24 5.85 85.06 0.50 21.74 16 17 O -0.58 -28.69 11.44 -4.61 -0.05 -28.75 16 18 C -0.25 -7.34 6.53 22.47 0.15 -7.19 16 19 C 0.02 0.56 9.39 22.51 0.21 0.77 16 20 C -0.25 -7.89 5.24 22.85 0.12 -7.77 16 21 S 0.25 8.56 18.69 -56.49 -1.06 7.50 16 22 C -0.04 -1.23 12.20 130.61 1.59 0.36 16 23 N -0.51 -16.98 10.49 -189.44 -1.99 -18.96 16 24 C 0.08 2.35 6.85 42.41 0.29 2.64 16 25 C -0.08 -1.55 10.09 71.24 0.72 -0.84 16 26 H 0.02 0.75 7.21 -2.39 -0.02 0.73 16 27 H 0.06 1.42 6.83 -2.38 -0.02 1.40 16 28 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.09 1.83 4.26 -2.39 -0.01 1.82 16 31 H 0.04 1.61 7.67 -2.39 -0.02 1.59 16 32 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.05 1.63 5.74 -2.39 -0.01 1.62 16 34 H 0.08 1.73 5.00 -2.39 -0.01 1.72 16 35 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.03 1.77 5.42 -2.39 -0.01 1.76 16 38 H -0.01 -0.45 7.46 -2.39 -0.02 -0.46 16 39 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 40 H 0.18 3.94 3.31 -2.91 -0.01 3.93 16 41 H 0.19 2.83 7.16 -2.91 -0.02 2.81 16 42 H 0.21 5.24 8.06 -2.92 -0.02 5.22 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.10 1.45 7.06 -2.39 -0.02 1.43 16 Total: -1.00 -77.71 359.80 5.49 -72.22 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 1.00 Total: 15.38 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: 6.57 Total: -14.00 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -2.99 Total: -100.20 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.05 Total: -28.75 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -1.06 Total: 7.50 kcal Total: -77.71 5.49 -72.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491996492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.743 kcal (2) G-P(sol) polarization free energy of solvation -77.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds