Wall clock time and date at job start Tue Mar 31 2020 14:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30694 * 1 3 3 C 1.30697 * 179.97438 * 2 1 4 4 C 1.50704 * 120.00082 * 119.38640 * 3 2 1 5 5 N 1.46492 * 109.47314 * 124.99495 * 4 3 2 6 6 C 1.34783 * 120.00272 * 180.02562 * 5 4 3 7 7 O 1.21784 * 119.99564 * 0.02562 * 6 5 4 8 8 C 1.41491 * 120.00373 * 180.02562 * 6 5 4 9 9 C 1.35451 * 120.00256 * 186.51828 * 8 6 5 10 10 C 1.46385 * 119.99477 * 10.06443 * 9 8 6 11 11 C 1.36663 * 126.78835 * 45.51635 * 10 9 8 12 12 N 1.35613 * 109.69379 * 179.46283 * 11 10 9 13 13 C 1.46502 * 124.77849 * 179.91486 * 12 11 10 14 14 C 1.50699 * 109.46949 * 265.80750 * 13 12 11 15 15 H 1.08001 * 120.00046 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99456 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00322 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47381 * 59.99969 * 18 16 14 20 20 H 1.48501 * 109.47284 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46823 * 299.99903 * 18 16 14 22 22 C 1.37986 * 110.43851 * 0.61842 * 12 11 10 23 23 C 1.39127 * 133.13330 * 179.27128 * 22 12 11 24 24 C 1.37768 * 119.93575 * 179.97438 * 23 22 12 25 25 C 1.38748 * 120.63010 * 0.02562 * 24 23 22 26 26 C 1.37780 * 120.29549 * 359.97438 * 25 24 23 27 27 C 1.39248 * 119.67319 * 0.25294 * 26 25 24 28 28 H 1.07995 * 120.00234 * 150.61868 * 1 2 3 29 29 H 1.08006 * 120.00199 * 330.61207 * 1 2 3 30 30 H 1.08001 * 120.00115 * 299.38050 * 3 2 1 31 31 H 1.09006 * 109.47029 * 4.99444 * 4 3 2 32 32 H 1.08997 * 109.46880 * 244.99628 * 4 3 2 33 33 H 0.97001 * 120.00295 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.99657 * 6.51856 * 8 6 5 35 35 H 1.07996 * 120.00038 * 190.06476 * 9 8 6 36 36 H 1.07996 * 125.14821 * 359.97438 * 11 10 9 37 37 H 1.09004 * 109.46962 * 25.80592 * 13 12 11 38 38 H 1.08999 * 109.47303 * 145.80635 * 13 12 11 39 39 H 0.97003 * 119.99544 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.02930 * 0.02571 * 23 22 12 41 41 H 1.07998 * 119.68983 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.85229 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.16295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 6 2.6139 0.0006 0.0000 4 6 3.3672 0.6413 -1.1372 5 7 4.2968 1.6408 -0.6054 6 6 5.0811 2.3458 -1.4448 7 8 5.0164 2.1522 -2.6454 8 6 5.9794 3.3107 -0.9312 9 6 6.6707 4.1109 -1.7777 10 6 6.3330 4.1348 -3.2019 11 6 5.0811 4.2101 -3.7449 12 7 5.1699 4.2207 -5.0981 13 6 4.0256 4.2925 -6.0101 14 6 3.6220 2.8996 -6.4202 15 1 4.1640 2.0464 -6.0399 16 6 2.5609 2.7145 -7.2809 17 7 1.9007 3.7536 -7.7435 18 14 2.0602 0.9880 -7.7886 19 1 1.6846 0.2068 -6.5829 20 1 0.9004 1.0607 -8.7131 21 1 3.1981 0.3241 -8.4740 22 6 6.4888 4.1386 -5.4951 23 6 7.1065 4.1002 -6.7412 24 6 8.4790 4.0153 -6.8259 25 6 9.2564 3.9669 -5.6777 26 6 8.6633 4.0038 -4.4346 27 6 7.2768 4.0848 -4.3345 28 1 -0.5400 -0.8149 -0.4588 29 1 -0.5401 0.8150 0.4590 30 1 3.1541 -0.4580 0.8150 31 1 2.6620 1.1246 -1.8135 32 1 3.9253 -0.1221 -1.6791 33 1 4.3481 1.7953 0.3508 34 1 6.1139 3.4092 0.1359 35 1 7.4710 4.7311 -1.4020 36 1 4.1612 4.2622 -3.1817 37 1 3.1902 4.7796 -5.5072 38 1 4.3015 4.8662 -6.8949 39 1 1.1543 3.6234 -8.3494 40 1 6.5107 4.1377 -7.6412 41 1 8.9543 3.9861 -7.7952 42 1 10.3313 3.9000 -5.7587 43 1 9.2705 3.9656 -3.5424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492875167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:16 Heat of formation + Delta-G solvation = 98.504425 kcal Electronic energy + Delta-G solvation = -26020.541961 eV Core-core repulsion = 22419.320671 eV Total energy + Delta-G solvation = -3601.221291 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63681 -39.33406 -36.40461 -35.79164 -33.93783 -33.26390 -32.84384 -30.95127 -29.51579 -29.39655 -28.02604 -26.59058 -24.84022 -23.27806 -22.44268 -21.68081 -20.66196 -20.04376 -18.80255 -17.72080 -16.89103 -16.61052 -16.00394 -15.78547 -15.36477 -15.10398 -14.81657 -14.43491 -14.35633 -14.00218 -13.96896 -13.49163 -13.34943 -13.07079 -12.99099 -12.86894 -12.31471 -12.23010 -12.03409 -11.83786 -11.49559 -11.18359 -11.07547 -10.76718 -10.76032 -10.38799 -10.07332 -9.91100 -9.54846 -9.45213 -9.23616 -9.09286 -8.72660 -8.60868 -8.51493 -7.36205 -6.57648 -6.18907 -4.28497 1.31158 1.72737 1.87253 1.93592 2.36479 3.26519 3.28942 3.34147 3.59404 3.71619 3.86093 3.95456 4.34426 4.60420 4.72821 5.11809 5.12285 5.28193 5.32995 5.36815 5.44441 5.57154 5.60590 5.61748 5.73263 5.81740 5.86262 5.91258 6.09995 6.17812 6.23532 6.32067 6.46961 6.54278 6.63596 6.67735 6.75191 6.92129 7.00749 7.07209 7.13101 7.20659 7.47948 7.58441 7.74132 7.85229 7.93507 8.14298 8.21320 8.73422 8.81296 9.38324 10.85534 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007634 B = 0.005262 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.801963 B = 5319.492263 C = 8260.326309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.179 4.179 3 C -0.127 4.127 4 C 0.163 3.837 5 N -0.736 5.736 6 C 0.540 3.460 7 O -0.514 6.514 8 C -0.278 4.278 9 C 0.071 3.929 10 C -0.232 4.232 11 C 0.177 3.823 12 N -0.439 5.439 13 C 0.234 3.766 14 C -0.532 4.532 15 H 0.067 0.933 16 C 0.065 3.935 17 N -0.895 5.895 18 Si 0.903 3.097 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.095 3.905 23 C -0.102 4.102 24 C -0.128 4.128 25 C -0.150 4.150 26 C -0.094 4.094 27 C -0.076 4.076 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.135 0.865 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.394 0.606 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.153 0.847 37 H 0.046 0.954 38 H 0.045 0.955 39 H 0.267 0.733 40 H 0.120 0.880 41 H 0.115 0.885 42 H 0.111 0.889 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.325 -1.397 15.376 16.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.180 4.180 3 C -0.145 4.145 4 C 0.039 3.961 5 N -0.390 5.390 6 C 0.331 3.669 7 O -0.390 6.390 8 C -0.299 4.299 9 C 0.050 3.950 10 C -0.238 4.238 11 C 0.040 3.960 12 N -0.114 5.114 13 C 0.116 3.884 14 C -0.570 4.570 15 H 0.085 0.915 16 C -0.138 4.138 17 N -0.533 5.533 18 Si 0.730 3.270 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.011 4.011 23 C -0.123 4.123 24 C -0.148 4.148 25 C -0.169 4.169 26 C -0.113 4.113 27 C -0.080 4.080 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.152 0.848 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.228 0.772 34 H 0.138 0.862 35 H 0.139 0.861 36 H 0.171 0.829 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.811 -1.456 14.074 14.944 hybrid contribution -0.589 -1.092 0.293 1.274 sum 4.222 -2.548 14.366 15.189 Atomic orbital electron populations 1.22149 0.90832 1.02318 1.01861 1.23561 0.94748 0.99429 1.00241 1.21079 0.90350 1.02728 1.00319 1.20070 0.91545 0.91165 0.93294 1.46049 1.41584 1.41209 1.10166 1.17286 0.80687 0.82200 0.86707 1.91075 1.66685 1.67145 1.14115 1.21681 1.06443 1.02120 0.99661 1.21601 0.92378 0.90248 0.90788 1.18546 0.91650 1.22598 0.91044 1.21726 0.97205 0.94030 0.83019 1.44589 1.06138 1.54792 1.05874 1.19742 0.81474 0.98898 0.88332 1.21348 1.15490 0.91883 1.28328 0.91454 1.24923 0.95692 0.97698 0.95472 1.69920 1.21139 1.29719 1.32540 0.86453 0.78067 0.83883 0.78555 1.19938 1.21053 1.19940 1.18204 0.83936 1.04457 0.94549 1.20165 0.94307 1.02722 0.95059 1.20595 0.92683 1.03580 0.97935 1.20685 0.98707 1.05169 0.92365 1.20212 0.92270 1.01886 0.96907 1.18918 0.92528 1.04767 0.91831 0.85757 0.85652 0.84794 0.90872 0.90458 0.77220 0.86237 0.86099 0.82914 0.93639 0.93715 0.92359 0.86206 0.86707 0.87060 0.87203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 14.70 29.10 0.43 -0.85 16 2 C -0.18 -2.01 13.46 -42.85 -0.58 -2.59 16 3 C -0.13 -1.36 9.62 -35.94 -0.35 -1.71 16 4 C 0.16 2.20 6.11 -5.20 -0.03 2.17 16 5 N -0.74 -9.33 5.54 -64.45 -0.36 -9.69 16 6 C 0.54 8.68 7.13 -15.02 -0.11 8.58 16 7 O -0.51 -10.93 12.05 5.11 0.06 -10.86 16 8 C -0.28 -3.69 9.82 -39.34 -0.39 -4.07 16 9 C 0.07 1.03 10.17 -37.30 -0.38 0.65 16 10 C -0.23 -4.41 4.76 -103.41 -0.49 -4.91 16 11 C 0.18 3.73 8.20 -16.45 -0.13 3.60 16 12 N -0.44 -10.27 2.73 -115.37 -0.31 -10.59 16 13 C 0.23 6.03 5.70 -5.19 -0.03 6.00 16 14 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 15 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 16 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 17 N -0.89 -25.66 13.29 55.43 0.74 -24.93 16 18 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 19 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 C 0.09 2.12 6.79 -83.96 -0.57 1.55 16 23 C -0.10 -2.11 9.97 -39.42 -0.39 -2.50 16 24 C -0.13 -2.24 10.01 -39.56 -0.40 -2.63 16 25 C -0.15 -2.44 10.03 -39.56 -0.40 -2.84 16 26 C -0.09 -1.63 10.09 -39.37 -0.40 -2.03 16 27 C -0.08 -1.54 6.36 -104.93 -0.67 -2.20 16 28 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.07 1.18 7.94 -51.93 -0.41 0.76 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.39 3.64 8.42 -40.82 -0.34 3.29 16 34 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.15 3.09 7.67 -52.49 -0.40 2.69 16 37 H 0.05 1.20 8.11 -51.93 -0.42 0.78 16 38 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 41 H 0.11 1.67 8.06 -52.49 -0.42 1.24 16 42 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 379.28 15.07 5.72 5.72 Total: -1.00 -32.96 379.28 -10.25 -43.21 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.78 Total: 7.72 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -5.30 Total: -17.47 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.06 Total: -45.20 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.06 Total: -10.86 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.96 -10.25 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492875167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.713 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds