Wall clock time and date at job start Tue Mar 31 2020 14:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30694 * 1 3 3 C 1.30697 * 179.97438 * 2 1 4 4 C 1.50704 * 120.00082 * 119.38640 * 3 2 1 5 5 N 1.46492 * 109.47314 * 124.99495 * 4 3 2 6 6 C 1.34783 * 120.00272 * 180.02562 * 5 4 3 7 7 O 1.21784 * 119.99564 * 0.02562 * 6 5 4 8 8 C 1.41491 * 120.00373 * 180.02562 * 6 5 4 9 9 C 1.35451 * 120.00256 * 186.51828 * 8 6 5 10 10 C 1.46385 * 119.99477 * 10.06443 * 9 8 6 11 11 C 1.36663 * 126.78835 * 45.51635 * 10 9 8 12 12 N 1.35613 * 109.69379 * 179.46283 * 11 10 9 13 13 C 1.46502 * 124.77849 * 179.91486 * 12 11 10 14 14 C 1.50699 * 109.46949 * 265.80750 * 13 12 11 15 15 H 1.08001 * 120.00046 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00342 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99456 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00322 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47381 * 59.99969 * 18 16 14 20 20 H 1.48501 * 109.47284 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46823 * 299.99903 * 18 16 14 22 22 C 1.37986 * 110.43851 * 0.61842 * 12 11 10 23 23 C 1.39127 * 133.13330 * 179.27128 * 22 12 11 24 24 C 1.37768 * 119.93575 * 179.97438 * 23 22 12 25 25 C 1.38748 * 120.63010 * 0.02562 * 24 23 22 26 26 C 1.37780 * 120.29549 * 359.97438 * 25 24 23 27 27 C 1.39248 * 119.67319 * 0.25294 * 26 25 24 28 28 H 1.07995 * 120.00234 * 150.61868 * 1 2 3 29 29 H 1.08006 * 120.00199 * 330.61207 * 1 2 3 30 30 H 1.08001 * 120.00115 * 299.38050 * 3 2 1 31 31 H 1.09006 * 109.47029 * 4.99444 * 4 3 2 32 32 H 1.08997 * 109.46880 * 244.99628 * 4 3 2 33 33 H 0.97001 * 120.00295 * 0.02562 * 5 4 3 34 34 H 1.08001 * 119.99657 * 6.51856 * 8 6 5 35 35 H 1.07996 * 120.00038 * 190.06476 * 9 8 6 36 36 H 1.07996 * 125.14821 * 359.97438 * 11 10 9 37 37 H 1.09004 * 109.46962 * 25.80592 * 13 12 11 38 38 H 1.08999 * 109.47303 * 145.80635 * 13 12 11 39 39 H 0.97003 * 119.99544 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.02930 * 0.02571 * 23 22 12 41 41 H 1.07998 * 119.68983 * 180.02562 * 24 23 22 42 42 H 1.07999 * 119.85229 * 179.97438 * 25 24 23 43 43 H 1.07993 * 120.16295 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 6 2.6139 0.0006 0.0000 4 6 3.3672 0.6413 -1.1372 5 7 4.2968 1.6408 -0.6054 6 6 5.0811 2.3458 -1.4448 7 8 5.0164 2.1522 -2.6454 8 6 5.9794 3.3107 -0.9312 9 6 6.6707 4.1109 -1.7777 10 6 6.3330 4.1348 -3.2019 11 6 5.0811 4.2101 -3.7449 12 7 5.1699 4.2207 -5.0981 13 6 4.0256 4.2925 -6.0101 14 6 3.6220 2.8996 -6.4202 15 1 4.1640 2.0464 -6.0399 16 6 2.5609 2.7145 -7.2809 17 7 1.9007 3.7536 -7.7435 18 14 2.0602 0.9880 -7.7886 19 1 1.6846 0.2068 -6.5829 20 1 0.9004 1.0607 -8.7131 21 1 3.1981 0.3241 -8.4740 22 6 6.4888 4.1386 -5.4951 23 6 7.1065 4.1002 -6.7412 24 6 8.4790 4.0153 -6.8259 25 6 9.2564 3.9669 -5.6777 26 6 8.6633 4.0038 -4.4346 27 6 7.2768 4.0848 -4.3345 28 1 -0.5400 -0.8149 -0.4588 29 1 -0.5401 0.8150 0.4590 30 1 3.1541 -0.4580 0.8150 31 1 2.6620 1.1246 -1.8135 32 1 3.9253 -0.1221 -1.6791 33 1 4.3481 1.7953 0.3508 34 1 6.1139 3.4092 0.1359 35 1 7.4710 4.7311 -1.4020 36 1 4.1612 4.2622 -3.1817 37 1 3.1902 4.7796 -5.5072 38 1 4.3015 4.8662 -6.8949 39 1 1.1543 3.6234 -8.3494 40 1 6.5107 4.1377 -7.6412 41 1 8.9543 3.9861 -7.7952 42 1 10.3313 3.9000 -5.7587 43 1 9.2705 3.9656 -3.5424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492875167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:15 Heat of formation + Delta-G solvation = 79.600792 kcal Electronic energy + Delta-G solvation = -26021.361684 eV Core-core repulsion = 22419.320671 eV Total energy + Delta-G solvation = -3602.041014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.14020 -40.63704 -37.85862 -36.90353 -35.62023 -34.58414 -34.32294 -32.43788 -31.10775 -30.43371 -29.55773 -28.26399 -26.10838 -25.01882 -23.78132 -23.12376 -22.12432 -21.42555 -20.07456 -18.89564 -18.67690 -18.15400 -17.38790 -17.23199 -16.79482 -16.32890 -16.24161 -16.09032 -15.61329 -15.14016 -15.00917 -14.92020 -14.74347 -14.66589 -14.28686 -14.14445 -13.93120 -13.66442 -13.47210 -13.33787 -13.19268 -12.94265 -12.75099 -12.45816 -12.43200 -12.25937 -11.75006 -11.56152 -10.97145 -10.81382 -10.59201 -10.33620 -10.14555 -9.98637 -9.76238 -8.90792 -8.44837 -7.97031 -6.55857 0.04827 0.54042 0.87431 0.92545 1.05852 1.27153 1.29709 1.39013 2.06668 2.26675 2.35784 2.62747 2.64104 2.89279 3.15037 3.89851 3.91931 3.98552 4.10949 4.18431 4.24095 4.33141 4.43905 4.47309 4.51811 4.62882 4.74485 4.76996 4.81888 4.91033 4.94130 4.95376 5.10027 5.14209 5.22205 5.25657 5.46092 5.49064 5.55410 5.60231 5.73883 5.77968 5.80185 6.06057 6.17377 6.24626 6.39098 6.56713 6.67656 6.80318 7.15400 7.54841 8.66826 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007634 B = 0.005262 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.801963 B = 5319.492263 C = 8260.326309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.216 4.216 3 C -0.121 4.121 4 C 0.166 3.834 5 N -0.716 5.716 6 C 0.527 3.473 7 O -0.573 6.573 8 C -0.251 4.251 9 C 0.054 3.946 10 C -0.208 4.208 11 C 0.137 3.863 12 N -0.462 5.462 13 C 0.254 3.746 14 C -0.548 4.548 15 H 0.041 0.959 16 C 0.022 3.978 17 N -0.918 5.918 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.265 1.265 21 H -0.272 1.272 22 C 0.058 3.942 23 C -0.142 4.142 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.087 4.087 27 C -0.100 4.100 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.163 0.837 31 H 0.037 0.963 32 H 0.061 0.939 33 H 0.416 0.584 34 H 0.173 0.827 35 H 0.168 0.832 36 H 0.144 0.856 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.273 0.727 40 H 0.097 0.903 41 H 0.145 0.855 42 H 0.157 0.843 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.488 -2.267 18.149 19.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.217 4.217 3 C -0.139 4.139 4 C 0.042 3.958 5 N -0.370 5.370 6 C 0.319 3.681 7 O -0.454 6.454 8 C -0.272 4.272 9 C 0.033 3.967 10 C -0.215 4.215 11 C 0.004 3.996 12 N -0.139 5.139 13 C 0.134 3.866 14 C -0.586 4.586 15 H 0.059 0.941 16 C -0.178 4.178 17 N -0.557 5.557 18 Si 0.789 3.211 19 H -0.199 1.199 20 H -0.190 1.190 21 H -0.197 1.197 22 C -0.047 4.047 23 C -0.163 4.163 24 C -0.135 4.135 25 C -0.164 4.164 26 C -0.105 4.105 27 C -0.104 4.104 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.180 0.820 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.253 0.747 34 H 0.191 0.809 35 H 0.185 0.815 36 H 0.161 0.839 37 H 0.046 0.954 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.115 0.885 41 H 0.163 0.837 42 H 0.174 0.826 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.971 -2.319 16.931 18.456 hybrid contribution -1.249 -0.854 -0.484 1.589 sum 5.722 -3.173 16.447 17.701 Atomic orbital electron populations 1.22601 0.90513 1.02735 1.00008 1.23999 0.95585 0.99947 1.02127 1.21000 0.90273 1.02756 0.99830 1.19900 0.91033 0.90696 0.94192 1.45873 1.40137 1.39958 1.11037 1.17990 0.81143 0.82788 0.86188 1.91093 1.68662 1.68822 1.16832 1.22056 1.03383 0.99734 1.02048 1.21972 0.94318 0.92163 0.88207 1.19020 0.90241 1.18908 0.93306 1.21768 0.98211 0.97328 0.82327 1.44344 1.05848 1.57394 1.06288 1.19180 0.82244 0.97187 0.88026 1.21389 1.15999 0.92129 1.29093 0.94093 1.25714 0.95333 1.01699 0.95092 1.69998 1.21418 1.31546 1.32744 0.85510 0.78231 0.79044 0.78362 1.19927 1.18959 1.19694 1.18710 0.83791 1.05975 0.96255 1.20287 0.95990 1.06036 0.93971 1.21013 0.91214 1.00997 1.00237 1.21195 1.00779 1.03167 0.91242 1.20703 0.91075 0.99780 0.98978 1.19337 0.93969 1.05854 0.91248 0.84364 0.83871 0.82018 0.94479 0.92066 0.74703 0.80950 0.81508 0.83883 0.95441 0.95821 0.91753 0.88479 0.83737 0.82557 0.83377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.15 14.70 68.09 1.00 -1.15 16 2 C -0.22 -4.68 13.46 22.82 0.31 -4.37 16 3 C -0.12 -2.50 9.62 25.96 0.25 -2.25 16 4 C 0.17 4.64 6.11 85.64 0.52 5.16 16 5 N -0.72 -17.54 5.54 -475.98 -2.64 -20.18 16 6 C 0.53 16.72 7.13 85.04 0.61 17.33 16 7 O -0.57 -25.61 12.05 -4.62 -0.06 -25.66 16 8 C -0.25 -5.89 9.82 22.43 0.22 -5.67 16 9 C 0.05 1.42 10.17 23.75 0.24 1.66 16 10 C -0.21 -8.00 4.76 -19.08 -0.09 -8.09 16 11 C 0.14 6.21 8.20 83.74 0.69 6.90 16 12 N -0.46 -23.60 2.73 -518.93 -1.42 -25.02 16 13 C 0.25 14.45 5.70 85.63 0.49 14.94 16 14 C -0.55 -33.53 9.39 25.60 0.24 -33.29 16 15 H 0.04 2.67 7.81 -2.91 -0.02 2.65 16 16 C 0.02 1.31 5.46 84.65 0.46 1.77 16 17 N -0.92 -54.98 13.29 21.45 0.28 -54.69 16 18 Si 0.96 46.54 29.54 68.60 2.03 48.56 16 19 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 22 C 0.06 2.77 6.79 38.91 0.26 3.03 16 23 C -0.14 -6.22 9.97 22.37 0.22 -6.00 16 24 C -0.12 -3.91 10.01 22.28 0.22 -3.69 16 25 C -0.15 -4.25 10.03 22.28 0.22 -4.03 16 26 C -0.09 -2.78 10.09 22.40 0.23 -2.55 16 27 C -0.10 -4.04 6.36 -20.06 -0.13 -4.17 16 28 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 29 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.04 1.29 7.94 -2.38 -0.02 1.27 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.42 6.55 8.42 -92.71 -0.78 5.77 16 34 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 36 H 0.14 6.43 7.67 -2.91 -0.02 6.41 16 37 H 0.03 1.61 8.11 -2.38 -0.02 1.59 16 38 H 0.02 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 41 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 42 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -79.98 379.28 4.41 -75.57 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.24 Total: 25.88 kcal Atomic # 6 Polarization: -30.42 SS G_CDS: 5.97 Total: -24.46 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -3.77 Total: -99.89 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.56 kcal Total: -79.98 4.41 -75.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492875167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.171 kcal (2) G-P(sol) polarization free energy of solvation -79.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds