Wall clock time and date at job start Tue Mar 31 2020 13:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 C 1.52996 * 109.46839 * 154.93648 * 3 2 1 5 5 C 1.52999 * 109.46828 * 184.99548 * 4 3 2 6 6 C 1.53002 * 109.46805 * 274.93671 * 3 2 1 7 7 N 1.46497 * 109.46926 * 60.73477 * 6 3 2 8 8 C 1.46504 * 119.99669 * 81.41956 * 7 6 3 9 9 C 1.50698 * 109.47441 * 89.99869 * 8 7 6 10 10 H 1.07998 * 120.00004 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00207 * 179.97438 * 9 8 7 12 12 N 1.31523 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00325 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46533 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47029 * 119.99628 * 13 11 9 16 16 H 1.48499 * 109.47005 * 239.99760 * 13 11 9 17 17 C 1.34772 * 120.00220 * 261.41262 * 7 6 3 18 18 O 1.21777 * 120.00273 * 182.96100 * 17 7 6 19 19 C 1.41546 * 119.99945 * 2.95988 * 17 7 6 20 20 C 1.35563 * 119.99984 * 179.97438 * 19 17 7 21 21 C 1.41731 * 119.99834 * 179.97438 * 20 19 17 22 22 C 1.37066 * 126.18981 * 180.02562 * 21 20 19 23 23 N 1.30959 * 113.84876 * 179.97438 * 22 21 20 24 24 C 1.29360 * 117.49186 * 0.02562 * 23 22 21 25 25 S 1.70920 * 110.64881 * 359.74204 * 24 23 22 26 26 H 1.09002 * 109.47026 * 53.86784 * 1 2 3 27 27 H 1.09002 * 109.46934 * 173.86843 * 1 2 3 28 28 H 1.08997 * 109.47576 * 293.86881 * 1 2 3 29 29 H 1.08993 * 109.47137 * 239.99944 * 2 1 3 30 30 H 1.08998 * 109.46915 * 119.99510 * 2 1 3 31 31 H 1.08995 * 109.47122 * 34.94101 * 3 2 1 32 32 H 1.09003 * 109.47430 * 304.99966 * 4 3 2 33 33 H 1.09001 * 109.47261 * 65.00433 * 4 3 2 34 34 H 1.08994 * 109.47351 * 300.00172 * 5 4 3 35 35 H 1.08998 * 109.46919 * 60.00624 * 5 4 3 36 36 H 1.09007 * 109.47052 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.47248 * 300.73478 * 6 3 2 38 38 H 1.08996 * 109.46717 * 180.73908 * 6 3 2 39 39 H 1.09000 * 109.46437 * 209.99638 * 8 7 6 40 40 H 1.08995 * 109.47277 * 329.99031 * 8 7 6 41 41 H 0.96995 * 120.00064 * 180.02562 * 12 11 9 42 42 H 1.08000 * 120.00244 * 0.02562 * 19 17 7 43 43 H 1.08000 * 119.99771 * 0.02562 * 20 19 17 44 44 H 1.08006 * 123.07542 * 0.02562 * 22 21 20 45 45 H 1.07993 * 124.67621 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.4419 1.4878 0.6111 5 6 3.9015 2.9427 0.7256 6 6 2.0929 1.9647 -1.4372 7 7 0.7475 1.9377 -2.0164 8 6 -0.1961 3.0206 -1.7276 9 6 -0.0463 4.1066 -2.7615 10 1 0.6795 4.0011 -3.5543 11 6 -0.8358 5.2349 -2.6955 12 7 -1.7201 5.3633 -1.7305 13 14 -0.6496 6.5815 -3.9768 14 1 0.4057 6.1976 -4.9485 15 1 -1.9376 6.7652 -4.6926 16 1 -0.2692 7.8518 -3.3082 17 6 0.3779 0.9169 -2.8149 18 8 -0.7210 0.9212 -3.3396 19 6 1.2671 -0.1604 -3.0437 20 6 0.8952 -1.1875 -3.8465 21 6 1.7858 -2.2659 -4.0760 22 6 1.5428 -3.3633 -4.8605 23 7 2.5371 -4.2146 -4.9027 24 6 3.5978 -3.9282 -4.2199 25 16 3.4084 -2.4351 -3.4100 26 1 -0.3633 0.6060 -0.8300 27 1 -0.3633 -1.0218 -0.1098 28 1 -0.3634 0.4158 0.9397 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3668 2.0659 0.5885 32 1 3.4212 1.0342 1.6020 33 1 4.1340 0.9374 -0.0262 34 1 3.9222 3.3963 -0.2652 35 1 3.2094 3.4932 1.3629 36 1 4.9005 2.9749 1.1606 37 1 2.7559 1.3336 -2.0289 38 1 2.4686 2.9879 -1.4383 39 1 -1.2141 2.6318 -1.7538 40 1 0.0113 3.4292 -0.7387 41 1 -2.2758 6.1569 -1.6842 42 1 2.2416 -0.1645 -2.5781 43 1 -0.0794 -1.1835 -4.3118 44 1 0.6164 -3.5119 -5.3955 45 1 4.4826 -4.5455 -4.1716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493019855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:42 Heat of formation + Delta-G solvation = 20.694682 kcal Electronic energy + Delta-G solvation = -25630.158119 eV Core-core repulsion = 22161.006696 eV Total energy + Delta-G solvation = -3469.151423 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.99252 -39.62442 -37.06547 -34.64656 -33.89057 -32.51142 -31.76183 -29.74416 -28.12169 -27.15866 -25.87106 -24.46541 -23.58571 -21.80772 -21.52954 -20.51008 -20.06336 -18.52616 -17.59102 -17.16153 -16.51739 -15.64832 -15.42172 -15.12371 -14.66720 -14.32994 -14.20533 -14.07125 -14.04813 -13.48057 -13.32715 -13.15059 -12.82906 -12.48153 -12.28988 -12.21603 -12.01729 -11.53915 -11.39057 -11.30568 -11.23145 -11.05425 -10.83603 -10.74812 -10.56961 -10.40294 -10.31821 -10.19220 -10.08455 -9.95218 -9.51696 -9.39591 -9.02094 -8.43312 -8.32818 -7.55666 -6.03889 -4.08286 -0.09555 1.08862 1.49075 1.77942 2.77186 3.29723 3.37637 3.41520 3.92598 3.99806 4.13090 4.45548 4.81113 4.88743 4.96695 4.98153 5.04084 5.12899 5.20842 5.30205 5.40947 5.51541 5.61776 5.63003 5.67502 5.76341 5.91442 5.92559 6.03938 6.07654 6.15276 6.22306 6.23726 6.26300 6.30900 6.40461 6.50511 6.60778 6.77917 7.09193 7.43635 7.44755 7.53717 7.92512 8.23917 8.38826 8.89482 9.05925 9.56711 11.03947 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.004054 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.700729 B = 6905.697189 C = 8136.016872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.118 4.118 3 C -0.110 4.110 4 C -0.113 4.113 5 C -0.157 4.157 6 C 0.112 3.888 7 N -0.585 5.585 8 C 0.248 3.752 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.062 3.938 12 N -0.894 5.894 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.538 3.462 18 O -0.543 6.543 19 C -0.182 4.182 20 C -0.019 4.019 21 C -0.193 4.193 22 C 0.055 3.945 23 N -0.470 5.470 24 C 0.002 3.998 25 S 0.151 5.849 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.262 0.738 42 H 0.126 0.874 43 H 0.151 0.849 44 H 0.183 0.817 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.569 -15.040 2.420 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.155 4.155 3 C -0.130 4.130 4 C -0.151 4.151 5 C -0.214 4.214 6 C -0.012 4.012 7 N -0.315 5.315 8 C 0.129 3.871 9 C -0.563 4.563 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.533 5.533 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.329 3.671 18 O -0.424 6.424 19 C -0.206 4.206 20 C -0.042 4.042 21 C -0.315 4.315 22 C -0.101 4.101 23 N -0.182 5.182 24 C -0.292 4.292 25 S 0.406 5.594 26 H 0.097 0.903 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.169 0.831 44 H 0.200 0.800 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 13.574 -14.845 2.581 20.280 hybrid contribution -0.593 0.686 -1.012 1.359 sum 12.980 -14.159 1.568 19.272 Atomic orbital electron populations 1.22108 0.95512 1.01399 1.03353 1.21672 0.96608 0.96065 1.01169 1.21711 0.96830 0.97031 0.97425 1.21526 0.96014 0.97153 1.00427 1.21847 1.00500 0.96615 1.02418 1.21667 0.84723 1.02253 0.92528 1.48191 1.14226 1.23068 1.46035 1.19252 0.88540 0.83144 0.96175 1.21461 1.20568 1.02376 1.11851 0.92433 1.24915 0.94979 0.98302 0.95823 1.69940 1.22695 1.28636 1.32077 0.86474 0.78076 0.81510 0.81554 1.19829 1.20908 1.21009 1.16677 0.87299 0.82889 0.80268 1.90830 1.22764 1.79436 1.49349 1.22640 1.01016 0.96294 1.00644 1.20542 0.98207 0.89930 0.95483 1.24063 0.98601 1.02068 1.06730 1.22651 0.98993 0.89126 0.99323 1.66026 1.00398 1.31521 1.20302 1.28509 1.01420 0.99639 0.99628 1.84020 1.10335 1.19100 1.45926 0.90265 0.93793 0.93125 0.92221 0.92576 0.90142 0.92126 0.92256 0.92090 0.92494 0.93248 0.91615 0.89853 0.93881 0.94935 0.92819 0.85693 0.83149 0.79982 0.78493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.58 9.22 37.16 0.34 -2.24 16 2 C -0.12 -1.53 5.04 -26.73 -0.13 -1.67 16 3 C -0.11 -1.50 2.15 -90.62 -0.19 -1.69 16 4 C -0.11 -1.21 5.32 -26.73 -0.14 -1.36 16 5 C -0.16 -1.72 9.67 37.16 0.36 -1.36 16 6 C 0.11 1.77 4.64 -4.04 -0.02 1.75 16 7 N -0.59 -11.86 1.34 -178.50 -0.24 -12.10 16 8 C 0.25 6.27 4.57 -5.19 -0.02 6.25 16 9 C -0.52 -14.62 9.39 -34.44 -0.32 -14.94 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -26.26 13.29 55.43 0.74 -25.53 16 13 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.54 10.88 4.84 -15.00 -0.07 10.81 16 18 O -0.54 -13.30 15.71 5.12 0.08 -13.22 16 19 C -0.18 -2.80 6.75 -39.28 -0.27 -3.07 16 20 C -0.02 -0.27 9.39 -39.20 -0.37 -0.64 16 21 C -0.19 -2.26 6.26 -38.67 -0.24 -2.51 16 22 C 0.05 0.61 11.38 -18.35 -0.21 0.40 16 23 N -0.47 -5.32 10.50 -15.06 -0.16 -5.48 16 24 C 0.00 0.02 12.20 51.72 0.63 0.65 16 25 S 0.15 1.40 21.97 -107.50 -2.36 -0.96 16 26 H 0.08 1.50 3.74 -51.93 -0.19 1.30 16 27 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.75 4.78 -51.93 -0.25 0.50 16 30 H 0.06 0.64 7.82 -51.93 -0.41 0.23 16 31 H 0.08 1.26 7.67 -51.93 -0.40 0.86 16 32 H 0.06 0.60 8.01 -51.93 -0.42 0.19 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.71 6.55 -51.93 -0.34 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.89 5.74 -51.93 -0.30 0.59 16 38 H 0.08 1.38 6.52 -51.93 -0.34 1.04 16 39 H 0.04 1.24 7.46 -51.93 -0.39 0.85 16 40 H 0.03 0.84 7.83 -51.93 -0.41 0.43 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.13 1.63 3.69 -52.49 -0.19 1.44 16 43 H 0.15 2.17 7.46 -52.49 -0.39 1.78 16 44 H 0.18 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 370.16 15.07 5.58 5.58 Total: -1.00 -32.67 370.16 -8.67 -41.34 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.52 Total: 1.58 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -0.76 Total: -7.95 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.34 Total: -43.11 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: 0.08 Total: -13.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.36 Total: -0.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.67 -8.67 -41.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493019855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.030 kcal (2) G-P(sol) polarization free energy of solvation -32.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds