Wall clock time and date at job start Tue Mar 31 2020 13:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46903 * 2 1 4 4 C 1.52996 * 109.46839 * 154.93648 * 3 2 1 5 5 C 1.52999 * 109.46828 * 184.99548 * 4 3 2 6 6 C 1.53002 * 109.46805 * 274.93671 * 3 2 1 7 7 N 1.46497 * 109.46926 * 60.73477 * 6 3 2 8 8 C 1.46504 * 119.99669 * 81.41956 * 7 6 3 9 9 C 1.50698 * 109.47441 * 89.99869 * 8 7 6 10 10 H 1.07998 * 120.00004 * 359.97438 * 9 8 7 11 11 C 1.37869 * 120.00207 * 179.97438 * 9 8 7 12 12 N 1.31523 * 120.00033 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00325 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.46533 * 0.02562 * 13 11 9 15 15 H 1.48494 * 109.47029 * 119.99628 * 13 11 9 16 16 H 1.48499 * 109.47005 * 239.99760 * 13 11 9 17 17 C 1.34772 * 120.00220 * 261.41262 * 7 6 3 18 18 O 1.21777 * 120.00273 * 182.96100 * 17 7 6 19 19 C 1.41546 * 119.99945 * 2.95988 * 17 7 6 20 20 C 1.35563 * 119.99984 * 179.97438 * 19 17 7 21 21 C 1.41731 * 119.99834 * 179.97438 * 20 19 17 22 22 C 1.37066 * 126.18981 * 180.02562 * 21 20 19 23 23 N 1.30959 * 113.84876 * 179.97438 * 22 21 20 24 24 C 1.29360 * 117.49186 * 0.02562 * 23 22 21 25 25 S 1.70920 * 110.64881 * 359.74204 * 24 23 22 26 26 H 1.09002 * 109.47026 * 53.86784 * 1 2 3 27 27 H 1.09002 * 109.46934 * 173.86843 * 1 2 3 28 28 H 1.08997 * 109.47576 * 293.86881 * 1 2 3 29 29 H 1.08993 * 109.47137 * 239.99944 * 2 1 3 30 30 H 1.08998 * 109.46915 * 119.99510 * 2 1 3 31 31 H 1.08995 * 109.47122 * 34.94101 * 3 2 1 32 32 H 1.09003 * 109.47430 * 304.99966 * 4 3 2 33 33 H 1.09001 * 109.47261 * 65.00433 * 4 3 2 34 34 H 1.08994 * 109.47351 * 300.00172 * 5 4 3 35 35 H 1.08998 * 109.46919 * 60.00624 * 5 4 3 36 36 H 1.09007 * 109.47052 * 180.02562 * 5 4 3 37 37 H 1.09003 * 109.47248 * 300.73478 * 6 3 2 38 38 H 1.08996 * 109.46717 * 180.73908 * 6 3 2 39 39 H 1.09000 * 109.46437 * 209.99638 * 8 7 6 40 40 H 1.08995 * 109.47277 * 329.99031 * 8 7 6 41 41 H 0.96995 * 120.00064 * 180.02562 * 12 11 9 42 42 H 1.08000 * 120.00244 * 0.02562 * 19 17 7 43 43 H 1.08000 * 119.99771 * 0.02562 * 20 19 17 44 44 H 1.08006 * 123.07542 * 0.02562 * 22 21 20 45 45 H 1.07993 * 124.67621 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.4419 1.4878 0.6111 5 6 3.9015 2.9427 0.7256 6 6 2.0929 1.9647 -1.4372 7 7 0.7475 1.9377 -2.0164 8 6 -0.1961 3.0206 -1.7276 9 6 -0.0463 4.1066 -2.7615 10 1 0.6795 4.0011 -3.5543 11 6 -0.8358 5.2349 -2.6955 12 7 -1.7201 5.3633 -1.7305 13 14 -0.6496 6.5815 -3.9768 14 1 0.4057 6.1976 -4.9485 15 1 -1.9376 6.7652 -4.6926 16 1 -0.2692 7.8518 -3.3082 17 6 0.3779 0.9169 -2.8149 18 8 -0.7210 0.9212 -3.3396 19 6 1.2671 -0.1604 -3.0437 20 6 0.8952 -1.1875 -3.8465 21 6 1.7858 -2.2659 -4.0760 22 6 1.5428 -3.3633 -4.8605 23 7 2.5371 -4.2146 -4.9027 24 6 3.5978 -3.9282 -4.2199 25 16 3.4084 -2.4351 -3.4100 26 1 -0.3633 0.6060 -0.8300 27 1 -0.3633 -1.0218 -0.1098 28 1 -0.3634 0.4158 0.9397 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.3668 2.0659 0.5885 32 1 3.4212 1.0342 1.6020 33 1 4.1340 0.9374 -0.0262 34 1 3.9222 3.3963 -0.2652 35 1 3.2094 3.4932 1.3629 36 1 4.9005 2.9749 1.1606 37 1 2.7559 1.3336 -2.0289 38 1 2.4686 2.9879 -1.4383 39 1 -1.2141 2.6318 -1.7538 40 1 0.0113 3.4292 -0.7387 41 1 -2.2758 6.1569 -1.6842 42 1 2.2416 -0.1645 -2.5781 43 1 -0.0794 -1.1835 -4.3118 44 1 0.6164 -3.5119 -5.3955 45 1 4.4826 -4.5455 -4.1716 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493019855.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:41 Heat of formation + Delta-G solvation = 1.820300 kcal Electronic energy + Delta-G solvation = -25630.976574 eV Core-core repulsion = 22161.006696 eV Total energy + Delta-G solvation = -3469.969877 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.39725 -40.53408 -38.36214 -36.05859 -35.30385 -34.43146 -32.86767 -30.94567 -29.62980 -28.54168 -26.98217 -25.68042 -25.22520 -22.95358 -22.84157 -21.44892 -21.10239 -19.79233 -18.76257 -18.54120 -18.36633 -17.14737 -16.79107 -16.43290 -16.08980 -15.50682 -15.26756 -15.17145 -14.90144 -14.71870 -14.46904 -14.39823 -14.28356 -14.13730 -13.55627 -13.43036 -13.30663 -13.12744 -12.96781 -12.63787 -12.53627 -12.38079 -12.24128 -12.22723 -12.08120 -11.79875 -11.63298 -11.37505 -11.34645 -11.25922 -10.83283 -10.63893 -10.54306 -10.13233 -9.49296 -9.10885 -8.20531 -6.35631 -1.01484 0.31691 0.71961 0.73684 1.35161 1.37725 1.49428 1.87578 2.31351 2.49669 2.56848 3.08088 3.41639 3.73758 3.75624 3.92765 4.01069 4.11821 4.15537 4.31536 4.38378 4.42930 4.45986 4.54897 4.61779 4.65994 4.83225 4.92366 4.94793 5.04909 5.11313 5.14525 5.16483 5.19765 5.20755 5.26544 5.29762 5.33019 5.48468 5.53392 5.58221 5.64423 5.88493 6.08988 6.65658 6.71988 6.82018 7.29499 7.49506 8.85675 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.004054 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.700729 B = 6905.697189 C = 8136.016872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.104 4.104 4 C -0.104 4.104 5 C -0.158 4.158 6 C 0.108 3.892 7 N -0.589 5.589 8 C 0.271 3.729 9 C -0.540 4.540 10 H 0.051 0.949 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.539 3.461 18 O -0.605 6.605 19 C -0.213 4.213 20 C 0.020 3.980 21 C -0.240 4.240 22 C 0.072 3.928 23 N -0.502 5.502 24 C 0.023 3.977 25 S 0.197 5.803 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.049 0.951 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.097 0.903 38 H 0.071 0.929 39 H -0.005 1.005 40 H 0.019 0.981 41 H 0.266 0.734 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.193 0.807 45 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.307 -17.069 2.104 24.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.147 4.147 3 C -0.124 4.124 4 C -0.142 4.142 5 C -0.215 4.215 6 C -0.015 4.015 7 N -0.318 5.318 8 C 0.150 3.850 9 C -0.579 4.579 10 H 0.069 0.931 11 C -0.190 4.190 12 N -0.568 5.568 13 Si 0.789 3.211 14 H -0.192 1.192 15 H -0.208 1.208 16 H -0.194 1.194 17 C 0.333 3.667 18 O -0.490 6.490 19 C -0.236 4.236 20 C -0.002 4.002 21 C -0.361 4.361 22 C -0.085 4.085 23 N -0.215 5.215 24 C -0.270 4.270 25 S 0.453 5.547 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.013 0.987 40 H 0.037 0.963 41 H 0.075 0.925 42 H 0.169 0.831 43 H 0.152 0.848 44 H 0.210 0.790 45 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 17.373 -16.872 2.299 24.326 hybrid contribution -1.703 1.091 -0.964 2.240 sum 15.670 -15.781 1.335 22.279 Atomic orbital electron populations 1.22068 0.97974 1.00941 1.01356 1.21650 0.94252 0.95825 1.03016 1.21633 0.98494 0.96815 0.95440 1.21497 0.93988 0.97236 1.01509 1.21858 1.01334 0.96744 1.01606 1.21953 0.82611 1.02566 0.94346 1.48070 1.15123 1.21978 1.46579 1.18580 0.87584 0.83894 0.94961 1.21742 1.20587 1.03392 1.12164 0.93072 1.25813 0.94488 1.00763 0.97890 1.70061 1.23426 1.29508 1.33759 0.85411 0.78011 0.78760 0.78893 1.19215 1.20807 1.19391 1.17333 0.87128 0.83461 0.78804 1.90780 1.25506 1.80778 1.51928 1.22228 1.01478 0.95678 1.04247 1.20504 0.97622 0.89537 0.92551 1.23914 1.00499 1.02146 1.09550 1.22955 0.99345 0.88412 0.97756 1.66150 1.01244 1.32084 1.22045 1.29303 1.01499 0.99331 0.96820 1.83853 1.07655 1.18533 1.44615 0.94103 0.92984 0.93716 0.91035 0.89776 0.93216 0.90480 0.89747 0.93186 0.94179 0.91066 0.88516 0.91050 0.98654 0.96302 0.92491 0.83114 0.84767 0.79008 0.74700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 9.22 71.98 0.66 -4.66 16 2 C -0.11 -2.70 5.04 30.60 0.15 -2.55 16 3 C -0.10 -2.77 2.15 -10.79 -0.02 -2.80 16 4 C -0.10 -1.96 5.32 30.59 0.16 -1.79 16 5 C -0.16 -3.26 9.67 71.98 0.70 -2.56 16 6 C 0.11 3.42 4.64 86.38 0.40 3.82 16 7 N -0.59 -25.26 1.34 -836.84 -1.12 -26.38 16 8 C 0.27 14.83 4.57 85.63 0.39 15.23 16 9 C -0.54 -31.70 9.39 25.60 0.24 -31.46 16 10 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 11 C 0.01 0.54 5.46 84.65 0.46 1.01 16 12 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 13 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 15 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 C 0.54 22.99 4.84 85.06 0.41 23.40 16 18 O -0.60 -31.99 15.71 -4.60 -0.07 -32.06 16 19 C -0.21 -6.53 6.75 22.47 0.15 -6.37 16 20 C 0.02 0.55 9.39 22.51 0.21 0.77 16 21 C -0.24 -5.10 6.26 22.86 0.14 -4.96 16 22 C 0.07 1.45 11.38 84.55 0.96 2.41 16 23 N -0.50 -9.69 10.50 -201.55 -2.12 -11.80 16 24 C 0.02 0.31 12.20 130.61 1.59 1.90 16 25 S 0.20 2.86 21.97 -56.49 -1.24 1.62 16 26 H 0.04 1.65 3.74 -2.39 -0.01 1.64 16 27 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.61 4.78 -2.39 -0.01 1.59 16 30 H 0.08 1.63 7.82 -2.39 -0.02 1.61 16 31 H 0.05 1.63 7.67 -2.39 -0.02 1.61 16 32 H 0.08 1.25 8.01 -2.39 -0.02 1.23 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.05 1.13 6.55 -2.39 -0.02 1.11 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.10 2.44 5.74 -2.39 -0.01 2.43 16 38 H 0.07 2.42 6.52 -2.39 -0.02 2.41 16 39 H 0.00 -0.29 7.46 -2.39 -0.02 -0.31 16 40 H 0.02 1.06 7.83 -2.39 -0.02 1.04 16 41 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 42 H 0.15 3.63 3.69 -2.91 -0.01 3.62 16 43 H 0.13 4.05 7.46 -2.91 -0.02 4.03 16 44 H 0.19 3.23 8.06 -2.91 -0.02 3.20 16 45 H 0.24 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -77.04 370.16 5.37 -71.66 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: 0.99 Total: 14.45 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: 6.62 Total: -8.64 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -2.95 Total: -94.73 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.07 Total: -32.06 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 2.86 SS G_CDS: -1.24 Total: 1.62 kcal Total: -77.04 5.37 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493019855.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.481 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds