Wall clock time and date at job start Tue Mar 31 2020 13:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46816 * 2 1 4 4 C 1.50705 * 109.47430 * 240.00067 * 2 1 3 5 5 N 1.29424 * 124.80267 * 60.01555 * 4 2 1 6 6 C 1.30943 * 117.36380 * 180.02562 * 5 4 2 7 7 C 1.35668 * 114.18865 * 0.02562 * 6 5 4 8 8 C 1.46685 * 126.12777 * 179.97438 * 7 6 5 9 9 O 1.21688 * 119.99649 * 315.91982 * 8 7 6 10 10 N 1.34767 * 120.00061 * 135.92463 * 8 7 6 11 11 C 1.46932 * 120.63196 * 3.30137 * 10 8 7 12 12 C 1.52765 * 109.00709 * 233.58700 * 11 10 8 13 13 C 1.53040 * 109.38129 * 305.58245 * 12 11 10 14 14 C 1.53000 * 109.45989 * 181.26011 * 13 12 11 15 15 C 1.50700 * 109.46660 * 64.93373 * 14 13 12 16 16 H 1.07993 * 120.00667 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00104 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99813 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46830 * 90.00287 * 19 17 15 21 21 H 1.48493 * 109.47100 * 210.00153 * 19 17 15 22 22 H 1.48497 * 109.47125 * 330.00348 * 19 17 15 23 23 C 1.53048 * 109.53714 * 61.24415 * 13 12 11 24 24 C 1.46930 * 120.63465 * 183.58116 * 10 8 7 25 25 S 1.70952 * 124.80380 * 239.72438 * 4 2 1 26 26 H 1.08996 * 109.47585 * 300.00191 * 1 2 3 27 27 H 1.08997 * 109.47322 * 60.00381 * 1 2 3 28 28 H 1.09002 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00070 * 2 1 3 30 30 H 1.08996 * 109.47720 * 60.00135 * 3 2 1 31 31 H 1.09002 * 109.46965 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47242 * 299.99516 * 3 2 1 33 33 H 1.08002 * 122.90906 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.58354 * 353.41735 * 11 10 8 35 35 H 1.08999 * 109.58781 * 113.84354 * 11 10 8 36 36 H 1.08999 * 109.56587 * 185.55021 * 12 11 10 37 37 H 1.08999 * 109.36263 * 65.49388 * 12 11 10 38 38 H 1.08993 * 109.46399 * 301.22449 * 13 12 11 39 39 H 1.09000 * 109.47146 * 184.93464 * 14 13 12 40 40 H 1.09003 * 109.47152 * 304.93493 * 14 13 12 41 41 H 0.96999 * 119.99603 * 180.02562 * 18 17 15 42 42 H 1.08995 * 109.49197 * 178.68041 * 23 13 12 43 43 H 1.09005 * 109.52222 * 58.60100 * 23 13 12 44 44 H 1.09004 * 109.58532 * 246.15917 * 24 10 8 45 45 H 1.09002 * 109.57848 * 6.43703 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7779 -0.3500 -2.4472 6 6 2.2903 -1.0754 -3.4095 7 6 3.0319 -2.1265 -2.9786 8 6 3.7215 -3.1041 -3.8274 9 8 3.1558 -3.5742 -4.7969 10 7 4.9814 -3.4816 -3.5336 11 6 5.6515 -2.9783 -2.3268 12 6 6.9901 -2.3580 -2.7231 13 6 7.8080 -3.3793 -3.5169 14 6 9.1618 -2.7706 -3.8878 15 6 9.9557 -2.5098 -2.6337 16 1 9.5368 -2.7541 -1.6687 17 6 11.2171 -1.9593 -2.7182 18 7 11.9101 -1.7321 -1.6238 19 14 11.9420 -1.5373 -4.3873 20 1 11.5797 -0.1425 -4.7460 21 1 13.4203 -1.6661 -4.3317 22 1 11.4022 -2.4678 -5.4110 23 6 7.0530 -3.7591 -4.7929 24 6 5.7132 -4.3996 -4.4171 25 16 3.0249 -2.1022 -1.2167 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 2.1358 -0.8559 -4.4556 34 1 5.0270 -2.2226 -1.8503 35 1 5.8244 -3.8021 -1.6343 36 1 7.5389 -2.0704 -1.8263 37 1 6.8117 -1.4767 -3.3393 38 1 7.9649 -4.2703 -2.9090 39 1 9.7090 -3.4638 -4.5267 40 1 9.0049 -1.8325 -4.4201 41 1 12.7973 -1.3445 -1.6833 42 1 7.6466 -4.4686 -5.3691 43 1 6.8741 -2.8649 -5.3901 44 1 5.8912 -5.3417 -3.8985 45 1 5.1281 -4.5834 -5.3182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000517743914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:28 Heat of formation + Delta-G solvation = -10.970161 kcal Electronic energy + Delta-G solvation = -24965.312090 eV Core-core repulsion = 21494.787576 eV Total energy + Delta-G solvation = -3470.524513 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50324 -39.63988 -37.47653 -35.69366 -34.17598 -32.29644 -31.29586 -29.98311 -28.59464 -27.49801 -26.30826 -24.73520 -23.30911 -22.59952 -21.80408 -20.61455 -19.52886 -18.59086 -18.29634 -16.94506 -16.71276 -16.25969 -15.62511 -15.26059 -14.67782 -14.52676 -14.48228 -14.33818 -13.88515 -13.80071 -13.36098 -13.23275 -13.12849 -12.87856 -12.45043 -12.37357 -12.24674 -12.03338 -11.78626 -11.56470 -11.52135 -11.36847 -11.23293 -11.01505 -10.72100 -10.44394 -10.21463 -9.93526 -9.86435 -9.80441 -9.58727 -9.36333 -9.11854 -9.00709 -8.57596 -8.55601 -6.08611 -4.06235 0.14730 0.91594 1.35144 2.37791 2.78469 3.09274 3.27587 3.35762 3.38951 3.75722 4.41536 4.42648 4.45570 4.67359 4.70853 4.95573 5.09913 5.14222 5.22916 5.23925 5.32175 5.32283 5.35293 5.44032 5.51240 5.52887 5.59604 5.61323 5.80394 5.82112 5.89876 5.90332 6.01318 6.17812 6.21234 6.34226 6.49219 6.71256 6.78319 6.87722 7.21220 7.29329 7.37640 7.45194 7.75225 8.00777 8.48647 8.95484 9.54573 11.04496 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.003288 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.152641 B = 8513.572423 C = 9717.973976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.050 3.950 5 N -0.472 5.472 6 C 0.110 3.890 7 C -0.286 4.286 8 C 0.594 3.406 9 O -0.534 6.534 10 N -0.596 5.596 11 C 0.093 3.907 12 C -0.118 4.118 13 C -0.072 4.072 14 C -0.009 4.009 15 C -0.517 4.517 16 H 0.074 0.926 17 C 0.067 3.933 18 N -0.903 5.903 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.266 1.266 23 C -0.133 4.133 24 C 0.115 3.885 25 S 0.185 5.815 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.183 0.817 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.017 0.983 40 H 0.011 0.989 41 H 0.263 0.737 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.080 1.047 3.164 21.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.041 4.041 3 C -0.200 4.200 4 C -0.225 4.225 5 N -0.186 5.186 6 C -0.047 4.047 7 C -0.410 4.410 8 C 0.380 3.620 9 O -0.413 6.413 10 N -0.328 5.328 11 C -0.031 4.031 12 C -0.156 4.156 13 C -0.091 4.091 14 C -0.046 4.046 15 C -0.555 4.555 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.171 4.171 24 C -0.007 4.007 25 S 0.444 5.556 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.200 0.800 34 H 0.096 0.904 35 H 0.093 0.907 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.035 0.965 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.071 0.681 3.456 21.363 hybrid contribution 0.567 0.511 -1.725 1.886 sum -20.504 1.192 1.731 20.612 Atomic orbital electron populations 1.21808 0.92665 1.02400 1.02997 1.19906 0.97051 0.96364 0.90778 1.21822 1.01541 0.93687 1.02969 1.27626 0.99427 0.98285 0.97189 1.66095 1.23490 1.30549 0.98427 1.22029 0.92832 0.89646 1.00197 1.25680 1.12270 1.06217 0.96878 1.16803 0.81184 0.80286 0.83717 1.90816 1.66011 1.55502 1.28930 1.48063 1.12772 1.46409 1.25561 1.22218 0.95537 0.99216 0.86085 1.21823 0.92962 0.98443 1.02386 1.21021 0.95785 0.98095 0.94185 1.19615 0.92009 0.95436 0.97565 1.21120 1.00059 1.41234 0.93086 0.90833 1.25024 0.97004 0.95202 0.96224 1.69907 1.12195 1.44623 1.27511 0.86818 0.78193 0.79205 0.85294 1.20397 1.21460 1.19051 1.22081 0.94693 1.00985 0.99343 1.21724 0.93078 0.91554 0.94346 1.84136 1.43373 1.26838 1.01271 0.91475 0.91349 0.92519 0.89085 0.91463 0.92172 0.91352 0.80034 0.90401 0.90697 0.88865 0.92272 0.91543 0.96509 0.97111 0.92766 0.90779 0.91946 0.91233 0.89313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.17 37.16 0.34 -0.60 16 2 C -0.02 -0.14 3.35 -91.77 -0.31 -0.45 16 3 C -0.14 -1.04 9.17 37.16 0.34 -0.70 16 4 C 0.05 0.52 5.90 -13.29 -0.08 0.44 16 5 N -0.47 -5.74 10.49 -11.50 -0.12 -5.86 16 6 C 0.11 1.40 11.30 -18.85 -0.21 1.18 16 7 C -0.29 -3.80 5.53 -37.09 -0.21 -4.01 16 8 C 0.59 9.10 7.57 -12.85 -0.10 9.00 16 9 O -0.53 -9.54 16.51 5.20 0.09 -9.46 16 10 N -0.60 -8.64 2.98 -174.56 -0.52 -9.16 16 11 C 0.09 1.27 5.88 -3.93 -0.02 1.25 16 12 C -0.12 -1.97 5.17 -26.83 -0.14 -2.11 16 13 C -0.07 -1.30 2.10 -90.57 -0.19 -1.49 16 14 C -0.01 -0.20 3.52 -27.88 -0.10 -0.30 16 15 C -0.52 -13.85 8.94 -34.44 -0.31 -14.16 16 16 H 0.07 2.09 7.30 -52.49 -0.38 1.70 16 17 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.27 -6.22 6.54 56.52 0.37 -5.85 16 23 C -0.13 -2.04 5.36 -26.61 -0.14 -2.18 16 24 C 0.11 1.60 6.43 -3.71 -0.02 1.58 16 25 S 0.19 1.96 19.95 -107.50 -2.14 -0.19 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.08 0.99 3.96 -29.76 -0.12 0.87 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.09 1.71 6.91 -51.93 -0.36 1.35 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 41 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.26 7.02 -51.93 -0.36 0.89 16 LS Contribution 369.13 15.07 5.56 5.56 Total: -1.00 -31.59 369.13 -9.35 -40.94 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.08 Total: -1.44 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.24 Total: -10.77 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.13 Total: -41.28 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.14 Total: -0.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.59 -9.35 -40.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517743914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.969 kcal (2) G-P(sol) polarization free energy of solvation -31.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds