Wall clock time and date at job start Tue Mar 31 2020 13:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.46816 * 2 1 4 4 C 1.50705 * 109.47430 * 240.00067 * 2 1 3 5 5 N 1.29424 * 124.80267 * 60.01555 * 4 2 1 6 6 C 1.30943 * 117.36380 * 180.02562 * 5 4 2 7 7 C 1.35668 * 114.18865 * 0.02562 * 6 5 4 8 8 C 1.46685 * 126.12777 * 179.97438 * 7 6 5 9 9 O 1.21688 * 119.99649 * 315.91982 * 8 7 6 10 10 N 1.34767 * 120.00061 * 135.92463 * 8 7 6 11 11 C 1.46932 * 120.63196 * 3.30137 * 10 8 7 12 12 C 1.52765 * 109.00709 * 233.58700 * 11 10 8 13 13 C 1.53040 * 109.38129 * 305.58245 * 12 11 10 14 14 C 1.53000 * 109.45989 * 181.26011 * 13 12 11 15 15 C 1.50700 * 109.46660 * 64.93373 * 14 13 12 16 16 H 1.07993 * 120.00667 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99930 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00104 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99813 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.46830 * 90.00287 * 19 17 15 21 21 H 1.48493 * 109.47100 * 210.00153 * 19 17 15 22 22 H 1.48497 * 109.47125 * 330.00348 * 19 17 15 23 23 C 1.53048 * 109.53714 * 61.24415 * 13 12 11 24 24 C 1.46930 * 120.63465 * 183.58116 * 10 8 7 25 25 S 1.70952 * 124.80380 * 239.72438 * 4 2 1 26 26 H 1.08996 * 109.47585 * 300.00191 * 1 2 3 27 27 H 1.08997 * 109.47322 * 60.00381 * 1 2 3 28 28 H 1.09002 * 109.47299 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00070 * 2 1 3 30 30 H 1.08996 * 109.47720 * 60.00135 * 3 2 1 31 31 H 1.09002 * 109.46965 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47242 * 299.99516 * 3 2 1 33 33 H 1.08002 * 122.90906 * 180.02562 * 6 5 4 34 34 H 1.09005 * 109.58354 * 353.41735 * 11 10 8 35 35 H 1.08999 * 109.58781 * 113.84354 * 11 10 8 36 36 H 1.08999 * 109.56587 * 185.55021 * 12 11 10 37 37 H 1.08999 * 109.36263 * 65.49388 * 12 11 10 38 38 H 1.08993 * 109.46399 * 301.22449 * 13 12 11 39 39 H 1.09000 * 109.47146 * 184.93464 * 14 13 12 40 40 H 1.09003 * 109.47152 * 304.93493 * 14 13 12 41 41 H 0.96999 * 119.99603 * 180.02562 * 18 17 15 42 42 H 1.08995 * 109.49197 * 178.68041 * 23 13 12 43 43 H 1.09005 * 109.52222 * 58.60100 * 23 13 12 44 44 H 1.09004 * 109.58532 * 246.15917 * 24 10 8 45 45 H 1.09002 * 109.57848 * 6.43703 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 7 1.7779 -0.3500 -2.4472 6 6 2.2903 -1.0754 -3.4095 7 6 3.0319 -2.1265 -2.9786 8 6 3.7215 -3.1041 -3.8274 9 8 3.1558 -3.5742 -4.7969 10 7 4.9814 -3.4816 -3.5336 11 6 5.6515 -2.9783 -2.3268 12 6 6.9901 -2.3580 -2.7231 13 6 7.8080 -3.3793 -3.5169 14 6 9.1618 -2.7706 -3.8878 15 6 9.9557 -2.5098 -2.6337 16 1 9.5368 -2.7541 -1.6687 17 6 11.2171 -1.9593 -2.7182 18 7 11.9101 -1.7321 -1.6238 19 14 11.9420 -1.5373 -4.3873 20 1 11.5797 -0.1425 -4.7460 21 1 13.4203 -1.6661 -4.3317 22 1 11.4022 -2.4678 -5.4110 23 6 7.0530 -3.7591 -4.7929 24 6 5.7132 -4.3996 -4.4171 25 16 3.0249 -2.1022 -1.2167 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 2.1358 -0.8559 -4.4556 34 1 5.0270 -2.2226 -1.8503 35 1 5.8244 -3.8021 -1.6343 36 1 7.5389 -2.0704 -1.8263 37 1 6.8117 -1.4767 -3.3393 38 1 7.9649 -4.2703 -2.9090 39 1 9.7090 -3.4638 -4.5267 40 1 9.0049 -1.8325 -4.4201 41 1 12.7973 -1.3445 -1.6833 42 1 7.6466 -4.4686 -5.3691 43 1 6.8741 -2.8649 -5.3901 44 1 5.8912 -5.3417 -3.8985 45 1 5.1281 -4.5834 -5.3182 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000517743914.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:28 Heat of formation + Delta-G solvation = -29.245919 kcal Electronic energy + Delta-G solvation = -24966.104586 eV Core-core repulsion = 21494.787576 eV Total energy + Delta-G solvation = -3471.317010 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58462 -40.65579 -38.79118 -36.37022 -35.75883 -34.15254 -32.52573 -31.08242 -30.19424 -28.04435 -27.29849 -26.16668 -24.49876 -23.83579 -22.94444 -21.87814 -20.83296 -19.58565 -19.29625 -18.83339 -17.93560 -17.33670 -16.61535 -16.38377 -16.23002 -15.60716 -15.41699 -15.25222 -15.24787 -15.01827 -14.89925 -14.32310 -14.27705 -14.19547 -13.79318 -13.60139 -13.14760 -12.99401 -12.97527 -12.70856 -12.64462 -12.44829 -12.25387 -12.13469 -12.02344 -11.95746 -11.75339 -11.48051 -11.38068 -11.17744 -10.96310 -10.72997 -10.70839 -10.33620 -9.94846 -9.74965 -8.25075 -6.26247 -0.77449 0.01583 0.45121 1.35487 1.37009 1.37842 1.48161 1.69535 1.99878 2.37715 2.96573 3.10801 3.36731 3.75621 3.77445 3.94704 4.01396 4.03758 4.10642 4.12985 4.20285 4.31856 4.42215 4.47940 4.57685 4.71698 4.81769 4.82486 4.82625 4.88289 4.95048 4.98159 5.02911 5.10483 5.14937 5.19434 5.27320 5.34811 5.36931 5.39890 5.53599 5.69279 5.73052 6.14856 6.34563 6.54547 6.81207 6.84651 7.37645 8.90919 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.003288 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.152641 B = 8513.572423 C = 9717.973976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.023 4.023 3 C -0.139 4.139 4 C 0.056 3.944 5 N -0.491 5.491 6 C 0.110 3.890 7 C -0.318 4.318 8 C 0.596 3.404 9 O -0.565 6.565 10 N -0.596 5.596 11 C 0.101 3.899 12 C -0.113 4.113 13 C -0.069 4.069 14 C -0.007 4.007 15 C -0.515 4.515 16 H 0.045 0.955 17 C 0.006 3.994 18 N -0.950 5.950 19 Si 0.939 3.061 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.248 1.248 23 C -0.123 4.123 24 C 0.117 3.883 25 S 0.219 5.781 26 H 0.089 0.911 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.185 0.815 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.065 0.935 39 H 0.018 0.982 40 H 0.009 0.991 41 H 0.263 0.737 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.088 0.912 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.312 0.917 3.192 22.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.045 4.045 3 C -0.198 4.198 4 C -0.219 4.219 5 N -0.204 5.204 6 C -0.048 4.048 7 C -0.441 4.441 8 C 0.383 3.617 9 O -0.446 6.446 10 N -0.328 5.328 11 C -0.022 4.022 12 C -0.151 4.151 13 C -0.088 4.088 14 C -0.045 4.045 15 C -0.553 4.553 16 H 0.063 0.937 17 C -0.191 4.191 18 N -0.592 5.592 19 Si 0.764 3.236 20 H -0.198 1.198 21 H -0.214 1.214 22 H -0.172 1.172 23 C -0.162 4.162 24 C -0.005 4.005 25 S 0.478 5.522 26 H 0.108 0.892 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.108 0.892 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.202 0.798 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.028 0.972 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.106 0.894 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -22.307 0.538 3.490 22.585 hybrid contribution 0.902 0.588 -1.610 1.937 sum -21.406 1.126 1.880 21.518 Atomic orbital electron populations 1.21797 0.91783 1.02546 1.03422 1.20172 0.97735 0.96430 0.90159 1.21817 1.01049 0.93531 1.03426 1.28247 0.98142 0.97834 0.97645 1.66160 1.24347 1.30970 0.98967 1.22179 0.92340 0.89533 1.00731 1.25575 1.13492 1.06544 0.98538 1.17003 0.81193 0.80089 0.83417 1.90789 1.66719 1.56765 1.30362 1.48119 1.12682 1.46298 1.25684 1.22157 0.93919 0.99995 0.86091 1.21691 0.94255 0.98096 1.01087 1.20933 0.94102 0.97971 0.95770 1.19581 0.93847 0.95661 0.95389 1.21455 1.00213 1.39816 0.93779 0.93706 1.25893 0.97770 0.95581 0.99858 1.70050 1.12780 1.46445 1.29889 0.85823 0.77300 0.79392 0.81110 1.19847 1.21388 1.17208 1.21969 0.95253 1.01197 0.97738 1.21742 0.92048 0.91994 0.94684 1.83920 1.43031 1.26400 0.98815 0.89227 0.92770 0.92519 0.86843 0.89205 0.92904 0.92736 0.79789 0.89221 0.89091 0.91003 0.93101 0.91635 0.96361 0.97230 0.92778 0.89422 0.92593 0.89431 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.17 71.98 0.66 -0.88 16 2 C -0.02 -0.30 3.35 -11.54 -0.04 -0.34 16 3 C -0.14 -1.79 9.17 71.98 0.66 -1.13 16 4 C 0.06 1.07 5.90 88.46 0.52 1.60 16 5 N -0.49 -11.51 10.49 -190.29 -2.00 -13.51 16 6 C 0.11 2.74 11.30 84.23 0.95 3.70 16 7 C -0.32 -8.16 5.53 23.88 0.13 -8.03 16 8 C 0.60 17.75 7.57 86.45 0.65 18.40 16 9 O -0.57 -19.97 16.51 -4.31 -0.07 -20.05 16 10 N -0.60 -16.46 2.98 -824.42 -2.46 -18.91 16 11 C 0.10 2.65 5.88 86.22 0.51 3.15 16 12 C -0.11 -3.72 5.17 30.53 0.16 -3.57 16 13 C -0.07 -2.42 2.10 -10.76 -0.02 -2.44 16 14 C -0.01 -0.33 3.52 29.85 0.10 -0.22 16 15 C -0.51 -27.87 8.94 25.60 0.23 -27.64 16 16 H 0.04 2.62 7.30 -2.91 -0.02 2.60 16 17 C 0.01 0.31 5.47 84.66 0.46 0.77 16 18 N -0.95 -58.05 13.96 21.45 0.30 -57.75 16 19 Si 0.94 43.66 27.47 68.60 1.88 45.55 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 22 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 23 C -0.12 -3.56 5.36 30.67 0.16 -3.40 16 24 C 0.12 3.05 6.43 86.36 0.55 3.60 16 25 S 0.22 4.24 19.95 -56.49 -1.13 3.11 16 26 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.11 0.99 8.12 -2.39 -0.02 0.97 16 30 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.19 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.09 2.14 3.96 -16.48 -0.07 2.08 16 35 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.67 6.91 -2.39 -0.02 2.66 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.02 0.80 7.20 -2.39 -0.02 0.78 16 40 H 0.01 0.42 7.57 -2.39 -0.02 0.40 16 41 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 44 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.09 2.39 7.02 -2.39 -0.02 2.37 16 Total: -1.00 -68.57 369.13 3.10 -65.48 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.86 Total: 12.50 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: 5.70 Total: -16.42 kcal Atomic # 7 Polarization: -86.02 SS G_CDS: -4.15 Total: -90.17 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.07 Total: -20.05 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Atomic # 16 Polarization: 4.24 SS G_CDS: -1.13 Total: 3.11 kcal Total: -68.57 3.10 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000517743914.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.229 kcal (2) G-P(sol) polarization free energy of solvation -68.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds