Wall clock time and date at job start Tue Mar 31 2020 13:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47149 * 2 1 4 4 C 1.53002 * 109.47114 * 317.22150 * 3 2 1 5 5 C 1.52997 * 109.46906 * 197.22683 * 3 2 1 6 6 N 1.46498 * 109.47270 * 77.22346 * 3 2 1 7 7 C 1.46500 * 120.00068 * 253.30660 * 6 3 2 8 8 C 1.50699 * 109.47153 * 270.00053 * 7 6 3 9 9 H 1.08002 * 119.99829 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00375 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99458 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00404 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47208 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47340 * 119.99831 * 12 10 8 15 15 H 1.48507 * 109.46918 * 239.99784 * 12 10 8 16 16 C 1.34777 * 119.99624 * 73.31028 * 6 3 2 17 17 O 1.21689 * 119.99973 * 189.63737 * 16 6 3 18 18 C 1.46688 * 120.00142 * 9.63769 * 16 6 3 19 19 C 1.35661 * 126.12979 * 332.66016 * 18 16 6 20 20 N 1.30939 * 114.19109 * 180.02562 * 19 18 16 21 21 C 1.29436 * 117.36487 * 359.97438 * 20 19 18 22 22 C 1.50700 * 124.80616 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49485 * 8.64734 * 22 21 20 24 24 C 1.52997 * 60.00150 * 252.51019 * 23 22 21 25 25 S 1.70956 * 110.38802 * 0.02562 * 21 20 19 26 26 H 1.08996 * 109.47258 * 300.00968 * 1 2 3 27 27 H 1.09004 * 109.46545 * 60.00374 * 1 2 3 28 28 H 1.08996 * 109.47628 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46917 * 239.99401 * 2 1 3 30 30 H 1.09004 * 109.46545 * 119.99626 * 2 1 3 31 31 H 1.09000 * 109.47279 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47564 * 300.00892 * 4 3 2 33 33 H 1.09004 * 109.46738 * 60.00296 * 4 3 2 34 34 H 1.09005 * 109.47147 * 258.58666 * 5 3 2 35 35 H 1.09002 * 109.47447 * 18.58755 * 5 3 2 36 36 H 1.09005 * 109.47572 * 138.58636 * 5 3 2 37 37 H 1.08991 * 109.47164 * 30.00265 * 7 6 3 38 38 H 1.09001 * 109.47023 * 150.00265 * 7 6 3 39 39 H 0.97000 * 119.99982 * 180.02562 * 11 10 8 40 40 H 1.08000 * 122.90323 * 0.05801 * 19 18 16 41 41 H 1.08996 * 115.54721 * 154.35591 * 22 21 20 42 42 H 1.08995 * 117.50526 * 359.97438 * 23 22 21 43 43 H 1.09006 * 117.49513 * 145.02193 * 23 22 21 44 44 H 1.08997 * 117.50385 * 252.51336 * 24 23 22 45 45 H 1.09003 * 117.51818 * 107.47947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.2118 2.2762 -0.9797 5 6 3.5090 1.4640 -0.4272 6 7 1.9149 2.0047 1.3470 7 6 0.8748 2.9959 1.6333 8 6 1.4157 4.3793 1.3792 9 1 2.4327 4.5074 1.0390 10 6 0.6126 5.4816 1.5822 11 7 -0.6256 5.3256 1.9970 12 14 1.2828 7.1964 1.2666 13 1 2.6924 7.1005 0.8090 14 1 0.4664 7.8621 0.2201 15 1 1.2228 7.9898 2.5205 16 6 2.7567 1.6101 2.3228 17 8 2.5481 1.9384 3.4758 18 6 3.9243 0.7849 1.9949 19 6 4.0316 -0.0681 0.9455 20 7 5.1819 -0.6896 0.8747 21 6 6.0588 -0.4242 1.7890 22 6 7.4320 -1.0400 1.8686 23 6 7.8929 -1.8937 0.6855 24 6 7.5169 -2.5611 2.0099 25 16 5.4387 0.7237 2.8937 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5754 3.3038 -0.9801 32 1 1.3048 1.8579 -1.9819 33 1 0.1653 2.2609 -0.6754 34 1 4.1420 1.5720 0.4536 35 1 3.7527 0.5322 -0.9377 36 1 3.6790 2.3031 -1.1019 37 1 0.0153 2.8175 0.9872 38 1 0.5693 2.9111 2.6762 39 1 -1.1907 6.1010 2.1394 40 1 3.2371 -0.2210 0.2301 41 1 8.1854 -0.4438 2.3833 42 1 7.2029 -2.0103 -0.1501 43 1 8.9499 -1.8591 0.4216 44 1 8.3265 -2.9656 2.6173 45 1 6.5796 -3.1163 2.0459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530348045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:53 Heat of formation + Delta-G solvation = 123.877192 kcal Electronic energy + Delta-G solvation = -26398.827165 eV Core-core repulsion = 22934.150071 eV Total energy + Delta-G solvation = -3464.677093 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.55246 -39.03945 -37.18810 -36.80897 -33.49381 -32.02780 -31.50864 -29.59051 -27.52646 -26.85676 -26.07012 -23.71699 -23.20961 -22.59607 -22.07137 -21.16451 -19.83265 -18.13714 -17.27995 -16.58990 -16.34427 -16.01218 -15.28327 -15.07153 -14.86178 -14.68756 -14.39746 -14.17931 -13.99855 -13.29526 -13.02680 -12.57331 -12.31888 -12.22825 -12.11462 -11.85381 -11.71835 -11.61564 -11.27025 -11.23524 -11.08835 -10.94769 -10.85577 -10.80462 -10.71247 -10.59848 -10.37069 -10.10982 -9.96153 -9.73844 -9.60488 -9.22220 -9.05870 -8.44578 -8.09545 -7.67850 -6.06887 -4.10891 0.46344 1.31668 1.87223 2.68002 3.27436 3.35654 3.39005 3.62051 3.69677 3.84159 4.01997 4.42322 4.57337 4.61414 4.75546 4.88607 4.96247 4.99952 5.22081 5.27882 5.32391 5.37631 5.40504 5.49515 5.55659 5.71793 5.73609 5.79083 5.88399 5.96229 6.03805 6.06062 6.14840 6.21925 6.28400 6.31468 6.48510 6.61150 6.92091 7.08603 7.42473 7.50884 7.71755 7.89755 8.20727 8.33160 8.83364 8.99884 9.53532 11.00946 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.004225 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.441613 B = 6625.508261 C = 7361.225659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.154 4.154 3 C 0.163 3.837 4 C -0.148 4.148 5 C -0.209 4.209 6 N -0.572 5.572 7 C 0.244 3.756 8 C -0.523 4.523 9 H 0.058 0.942 10 C 0.063 3.937 11 N -0.892 5.892 12 Si 0.894 3.106 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.586 3.414 17 O -0.536 6.536 18 C -0.307 4.307 19 C 0.071 3.929 20 N -0.487 5.487 21 C 0.055 3.945 22 C -0.096 4.096 23 C -0.149 4.149 24 C -0.156 4.156 25 S 0.213 5.787 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.044 0.956 39 H 0.263 0.737 40 H 0.227 0.773 41 H 0.126 0.874 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.469 -14.764 -5.343 20.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C 0.077 3.923 4 C -0.205 4.205 5 C -0.266 4.266 6 N -0.303 5.303 7 C 0.126 3.874 8 C -0.562 4.562 9 H 0.076 0.924 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.722 3.278 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.371 3.629 17 O -0.415 6.415 18 C -0.431 4.431 19 C -0.085 4.085 20 N -0.202 5.202 21 C -0.218 4.218 22 C -0.117 4.117 23 C -0.188 4.188 24 C -0.195 4.195 25 S 0.473 5.527 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.242 0.758 41 H 0.144 0.856 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.710 -14.302 -4.140 19.576 hybrid contribution -0.382 1.047 -0.792 1.367 sum 12.328 -13.255 -4.932 18.761 Atomic orbital electron populations 1.21849 0.94561 1.01187 1.03199 1.22433 0.98122 0.96619 1.02055 1.20460 0.95040 0.92533 0.84303 1.22197 1.01017 1.01084 0.96180 1.23928 0.97073 1.01871 1.03746 1.48139 1.33134 1.41569 1.07463 1.19425 0.85040 0.84736 0.98242 1.21443 0.98830 0.90708 1.45209 0.92426 1.24901 0.94834 0.99112 0.95075 1.69936 1.06745 1.30423 1.46036 0.86496 0.79038 0.84323 0.77919 1.19829 1.20943 1.20899 1.16579 0.81339 0.79487 0.85529 1.90797 1.74280 1.57293 1.19131 1.25948 1.02568 1.10950 1.03634 1.24211 0.96765 0.90997 0.96555 1.66167 1.01790 1.26621 1.25645 1.26406 0.99309 1.00416 0.95659 1.20481 0.90900 0.93894 1.06449 1.22995 1.02026 1.01357 0.92431 1.23039 1.03706 0.92187 1.00598 1.83908 1.05612 1.36485 1.26728 0.91743 0.91777 0.93198 0.90603 0.90823 0.90050 0.92773 0.90758 0.88552 0.90800 0.92144 0.93905 0.93750 0.92766 0.75772 0.85617 0.87301 0.88216 0.87976 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.96 37.16 0.33 -1.74 16 2 C -0.15 -2.14 3.85 -26.73 -0.10 -2.24 16 3 C 0.16 2.71 0.74 -131.82 -0.10 2.61 16 4 C -0.15 -2.45 6.28 37.16 0.23 -2.21 16 5 C -0.21 -3.23 7.33 37.16 0.27 -2.95 16 6 N -0.57 -12.13 2.38 -161.71 -0.38 -12.51 16 7 C 0.24 6.18 4.48 -5.19 -0.02 6.16 16 8 C -0.52 -14.35 8.19 -34.44 -0.28 -14.63 16 9 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 12 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 16 C 0.59 12.94 6.98 -12.85 -0.09 12.85 16 17 O -0.54 -13.97 16.62 5.20 0.09 -13.88 16 18 C -0.31 -5.50 4.47 -37.09 -0.17 -5.67 16 19 C 0.07 1.08 5.54 -18.85 -0.10 0.98 16 20 N -0.49 -6.96 9.98 -19.51 -0.19 -7.16 16 21 C 0.05 0.72 6.96 -13.29 -0.09 0.63 16 22 C -0.10 -0.93 6.28 -91.77 -0.58 -1.50 16 23 C -0.15 -1.24 10.12 -26.73 -0.27 -1.51 16 24 C -0.16 -1.27 10.23 -26.73 -0.27 -1.54 16 25 S 0.21 3.22 23.12 -107.50 -2.49 0.74 16 26 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 27 H 0.06 0.83 6.35 -51.93 -0.33 0.50 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.84 7.42 -51.93 -0.39 0.46 16 30 H 0.07 1.08 5.72 -51.93 -0.30 0.79 16 31 H 0.08 1.56 7.05 -51.93 -0.37 1.19 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.30 4.68 -51.93 -0.24 1.06 16 34 H 0.10 1.66 3.45 -78.55 -0.27 1.39 16 35 H 0.07 0.97 5.75 -51.93 -0.30 0.67 16 36 H 0.06 0.93 7.69 -51.93 -0.40 0.53 16 37 H 0.04 1.07 5.78 -51.93 -0.30 0.77 16 38 H 0.04 1.29 7.31 -51.93 -0.38 0.91 16 39 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.23 3.16 1.47 -63.91 -0.09 3.07 16 41 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 1.05 7.84 -51.93 -0.41 0.64 16 43 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -31.94 355.40 -9.50 -41.44 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.26 Total: 3.72 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.34 Total: -9.11 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: 0.16 Total: -44.81 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -2.49 Total: 0.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.94 -9.50 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530348045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.321 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds