Wall clock time and date at job start Tue Mar 31 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47149 * 2 1 4 4 C 1.53002 * 109.47114 * 317.22150 * 3 2 1 5 5 C 1.52997 * 109.46906 * 197.22683 * 3 2 1 6 6 N 1.46498 * 109.47270 * 77.22346 * 3 2 1 7 7 C 1.46500 * 120.00068 * 253.30660 * 6 3 2 8 8 C 1.50699 * 109.47153 * 270.00053 * 7 6 3 9 9 H 1.08002 * 119.99829 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00375 * 180.02562 * 8 7 6 11 11 N 1.31514 * 119.99458 * 359.97438 * 10 8 7 12 12 Si 1.86795 * 120.00404 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47208 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47340 * 119.99831 * 12 10 8 15 15 H 1.48507 * 109.46918 * 239.99784 * 12 10 8 16 16 C 1.34777 * 119.99624 * 73.31028 * 6 3 2 17 17 O 1.21689 * 119.99973 * 189.63737 * 16 6 3 18 18 C 1.46688 * 120.00142 * 9.63769 * 16 6 3 19 19 C 1.35661 * 126.12979 * 332.66016 * 18 16 6 20 20 N 1.30939 * 114.19109 * 180.02562 * 19 18 16 21 21 C 1.29436 * 117.36487 * 359.97438 * 20 19 18 22 22 C 1.50700 * 124.80616 * 180.02562 * 21 20 19 23 23 C 1.52997 * 117.49485 * 8.64734 * 22 21 20 24 24 C 1.52997 * 60.00150 * 252.51019 * 23 22 21 25 25 S 1.70956 * 110.38802 * 0.02562 * 21 20 19 26 26 H 1.08996 * 109.47258 * 300.00968 * 1 2 3 27 27 H 1.09004 * 109.46545 * 60.00374 * 1 2 3 28 28 H 1.08996 * 109.47628 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46917 * 239.99401 * 2 1 3 30 30 H 1.09004 * 109.46545 * 119.99626 * 2 1 3 31 31 H 1.09000 * 109.47279 * 180.02562 * 4 3 2 32 32 H 1.09000 * 109.47564 * 300.00892 * 4 3 2 33 33 H 1.09004 * 109.46738 * 60.00296 * 4 3 2 34 34 H 1.09005 * 109.47147 * 258.58666 * 5 3 2 35 35 H 1.09002 * 109.47447 * 18.58755 * 5 3 2 36 36 H 1.09005 * 109.47572 * 138.58636 * 5 3 2 37 37 H 1.08991 * 109.47164 * 30.00265 * 7 6 3 38 38 H 1.09001 * 109.47023 * 150.00265 * 7 6 3 39 39 H 0.97000 * 119.99982 * 180.02562 * 11 10 8 40 40 H 1.08000 * 122.90323 * 0.05801 * 19 18 16 41 41 H 1.08996 * 115.54721 * 154.35591 * 22 21 20 42 42 H 1.08995 * 117.50526 * 359.97438 * 23 22 21 43 43 H 1.09006 * 117.49513 * 145.02193 * 23 22 21 44 44 H 1.08997 * 117.50385 * 252.51336 * 24 23 22 45 45 H 1.09003 * 117.51818 * 107.47947 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.2118 2.2762 -0.9797 5 6 3.5090 1.4640 -0.4272 6 7 1.9149 2.0047 1.3470 7 6 0.8748 2.9959 1.6333 8 6 1.4157 4.3793 1.3792 9 1 2.4327 4.5074 1.0390 10 6 0.6126 5.4816 1.5822 11 7 -0.6256 5.3256 1.9970 12 14 1.2828 7.1964 1.2666 13 1 2.6924 7.1005 0.8090 14 1 0.4664 7.8621 0.2201 15 1 1.2228 7.9898 2.5205 16 6 2.7567 1.6101 2.3228 17 8 2.5481 1.9384 3.4758 18 6 3.9243 0.7849 1.9949 19 6 4.0316 -0.0681 0.9455 20 7 5.1819 -0.6896 0.8747 21 6 6.0588 -0.4242 1.7890 22 6 7.4320 -1.0400 1.8686 23 6 7.8929 -1.8937 0.6855 24 6 7.5169 -2.5611 2.0099 25 16 5.4387 0.7237 2.8937 26 1 -0.3633 0.5140 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.5754 3.3038 -0.9801 32 1 1.3048 1.8579 -1.9819 33 1 0.1653 2.2609 -0.6754 34 1 4.1420 1.5720 0.4536 35 1 3.7527 0.5322 -0.9377 36 1 3.6790 2.3031 -1.1019 37 1 0.0153 2.8175 0.9872 38 1 0.5693 2.9111 2.6762 39 1 -1.1907 6.1010 2.1394 40 1 3.2371 -0.2210 0.2301 41 1 8.1854 -0.4438 2.3833 42 1 7.2029 -2.0103 -0.1501 43 1 8.9499 -1.8591 0.4216 44 1 8.3265 -2.9656 2.6173 45 1 6.5796 -3.1163 2.0459 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530348045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:52 Heat of formation + Delta-G solvation = 104.059220 kcal Electronic energy + Delta-G solvation = -26399.686537 eV Core-core repulsion = 22934.150071 eV Total energy + Delta-G solvation = -3465.536465 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.89360 -40.34261 -38.66609 -37.77891 -35.43697 -33.72341 -32.91795 -30.88771 -29.29409 -28.20018 -27.37819 -25.11786 -24.81238 -23.28235 -23.18036 -22.71119 -21.09239 -19.27340 -18.72110 -18.61907 -17.79545 -17.19215 -16.65975 -16.51813 -16.17434 -16.10859 -15.88146 -15.59267 -15.12220 -14.69008 -14.45931 -14.26830 -13.71015 -13.57541 -13.39740 -13.11363 -12.99519 -12.93276 -12.75185 -12.60603 -12.55289 -12.34510 -12.29953 -12.12771 -12.00967 -11.87213 -11.66246 -11.57821 -11.50624 -11.15548 -11.04439 -10.62575 -10.58198 -10.41504 -9.53478 -9.23981 -8.22308 -6.35222 -0.74819 0.11406 0.68668 1.33805 1.36220 1.45246 1.47989 2.07729 2.25100 2.40318 2.86556 3.04848 3.07367 3.57886 3.64091 3.68069 3.85261 3.91070 4.02352 4.10412 4.14362 4.27498 4.30499 4.51313 4.56869 4.70981 4.73108 4.84530 4.86548 4.91713 4.94452 4.98895 5.00833 5.07180 5.13201 5.18493 5.22177 5.35141 5.36814 5.39229 5.51529 5.61083 5.83267 6.06850 6.51768 6.62748 6.72760 7.19912 7.37377 8.84836 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016658 B = 0.004225 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.441613 B = 6625.508261 C = 7361.225659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.153 3.847 4 C -0.143 4.143 5 C -0.206 4.206 6 N -0.575 5.575 7 C 0.265 3.735 8 C -0.532 4.532 9 H 0.048 0.952 10 C 0.013 3.987 11 N -0.925 5.925 12 Si 0.961 3.039 13 H -0.270 1.270 14 H -0.268 1.268 15 H -0.283 1.283 16 C 0.579 3.421 17 O -0.597 6.597 18 C -0.356 4.356 19 C 0.104 3.896 20 N -0.495 5.495 21 C 0.089 3.911 22 C -0.120 4.120 23 C -0.138 4.138 24 C -0.143 4.143 25 S 0.197 5.803 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.042 0.958 38 H -0.008 1.008 39 H 0.267 0.733 40 H 0.240 0.760 41 H 0.148 0.852 42 H 0.097 0.903 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.198 -16.703 -7.946 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.069 3.931 4 C -0.200 4.200 5 C -0.263 4.263 6 N -0.304 5.304 7 C 0.144 3.856 8 C -0.570 4.570 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.565 5.565 12 Si 0.785 3.215 13 H -0.194 1.194 14 H -0.193 1.193 15 H -0.209 1.209 16 C 0.367 3.633 17 O -0.481 6.481 18 C -0.479 4.479 19 C -0.053 4.053 20 N -0.210 5.210 21 C -0.184 4.184 22 C -0.142 4.142 23 C -0.177 4.177 24 C -0.183 4.183 25 S 0.458 5.542 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.139 0.861 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.080 0.920 37 H 0.059 0.941 38 H 0.010 0.990 39 H 0.076 0.924 40 H 0.255 0.745 41 H 0.165 0.835 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 15.443 -16.255 -6.782 23.425 hybrid contribution -1.143 1.516 -0.006 1.899 sum 14.300 -14.739 -6.789 21.629 Atomic orbital electron populations 1.21825 0.94618 1.02376 1.01780 1.22435 0.98084 0.94576 1.03697 1.20868 0.96423 0.94093 0.81691 1.22147 0.99701 0.99679 0.98450 1.23867 0.95517 1.03647 1.03241 1.48116 1.32027 1.40747 1.09547 1.18850 0.86311 0.85486 0.94951 1.21608 0.98374 0.91950 1.45105 0.93345 1.25739 0.95070 1.03105 0.94723 1.70049 1.07911 1.31696 1.46809 0.85471 0.78629 0.79369 0.77984 1.19432 1.19270 1.20916 1.17128 0.82181 0.79239 0.84703 1.90737 1.75827 1.60044 1.21450 1.25388 1.02501 1.13360 1.06666 1.24393 0.97143 0.88735 0.94981 1.66328 1.01643 1.26947 1.26085 1.27156 1.00100 0.97665 0.93436 1.20848 0.89195 0.95304 1.08817 1.23106 1.03272 0.99623 0.91673 1.23155 1.04123 0.90134 1.00845 1.83914 1.04781 1.37949 1.27604 0.95640 0.90757 0.90677 0.86093 0.91684 0.93098 0.88479 0.92374 0.90141 0.87457 0.92017 0.94058 0.98983 0.92447 0.74493 0.83467 0.88458 0.85563 0.85250 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.96 71.98 0.65 -3.32 16 2 C -0.15 -3.88 3.85 30.60 0.12 -3.76 16 3 C 0.15 5.04 0.74 3.60 0.00 5.05 16 4 C -0.14 -4.66 6.28 71.98 0.45 -4.21 16 5 C -0.21 -6.00 7.33 71.98 0.53 -5.47 16 6 N -0.57 -25.70 2.38 -783.74 -1.86 -27.57 16 7 C 0.26 14.41 4.48 85.63 0.38 14.79 16 8 C -0.53 -30.66 8.19 25.60 0.21 -30.45 16 9 H 0.05 2.82 7.81 -2.91 -0.02 2.79 16 10 C 0.01 0.74 5.46 84.66 0.46 1.20 16 11 N -0.92 -55.77 13.29 21.45 0.28 -55.48 16 12 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 13 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 15 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 16 C 0.58 27.23 6.98 86.45 0.60 27.83 16 17 O -0.60 -33.82 16.62 -4.31 -0.07 -33.89 16 18 C -0.36 -13.00 4.47 23.88 0.11 -12.90 16 19 C 0.10 3.04 5.54 84.23 0.47 3.51 16 20 N -0.49 -12.91 9.98 -215.62 -2.15 -15.06 16 21 C 0.09 2.16 6.96 88.46 0.62 2.78 16 22 C -0.12 -1.91 6.28 -11.54 -0.07 -1.98 16 23 C -0.14 -1.70 10.12 30.59 0.31 -1.40 16 24 C -0.14 -1.76 10.23 30.59 0.31 -1.44 16 25 S 0.20 5.99 23.12 -56.49 -1.31 4.68 16 26 H 0.02 0.86 7.78 -2.39 -0.02 0.84 16 27 H 0.07 1.81 6.35 -2.39 -0.02 1.79 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.12 2.10 7.42 -2.39 -0.02 2.08 16 30 H 0.06 1.84 5.72 -2.39 -0.01 1.82 16 31 H 0.05 1.97 7.05 -2.39 -0.02 1.95 16 32 H 0.10 2.29 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.07 4.68 -2.38 -0.01 2.06 16 34 H 0.08 2.73 3.45 -27.40 -0.09 2.63 16 35 H 0.11 2.38 5.75 -2.39 -0.01 2.37 16 36 H 0.06 1.79 7.69 -2.38 -0.02 1.77 16 37 H 0.04 2.23 5.78 -2.39 -0.01 2.22 16 38 H -0.01 -0.51 7.31 -2.39 -0.02 -0.53 16 39 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 40 H 0.24 6.08 1.47 -13.64 -0.02 6.06 16 41 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.10 1.49 7.84 -2.39 -0.02 1.48 16 43 H 0.13 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -75.92 355.40 2.98 -72.93 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.92 Total: 16.89 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: 5.14 Total: -9.77 kcal Atomic # 7 Polarization: -94.38 SS G_CDS: -3.73 Total: -98.11 kcal Atomic # 8 Polarization: -33.82 SS G_CDS: -0.07 Total: -33.89 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Atomic # 16 Polarization: 5.99 SS G_CDS: -1.31 Total: 4.68 kcal Total: -75.92 2.98 -72.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530348045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.991 kcal (2) G-P(sol) polarization free energy of solvation -75.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds