Wall clock time and date at job start Tue Mar 31 2020 13:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47198 * 2 1 4 4 C 1.33393 * 125.20000 * 90.00179 * 3 2 1 5 5 C 1.38429 * 114.92028 * 179.97438 * 4 3 2 6 6 C 1.33393 * 114.91788 * 359.97438 * 5 4 3 7 7 C 1.50702 * 125.20019 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46805 * 90.00144 * 7 6 5 9 9 C 1.34776 * 119.99686 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00192 * 355.01845 * 9 8 7 11 11 N 1.34776 * 119.99780 * 175.01108 * 9 8 7 12 12 C 1.46928 * 120.62957 * 4.95017 * 11 9 8 13 13 C 1.53622 * 108.54299 * 126.36479 * 12 11 9 14 14 C 1.53045 * 109.24221 * 54.85441 * 13 12 11 15 15 C 1.50706 * 109.44762 * 178.49567 * 14 13 12 16 16 H 1.08002 * 119.99945 * 120.06141 * 15 14 13 17 17 C 1.37874 * 119.99779 * 300.06355 * 15 14 13 18 18 N 1.31508 * 120.00597 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99562 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47400 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47269 * 119.99950 * 19 17 15 22 22 H 1.48496 * 109.47618 * 239.99683 * 19 17 15 23 23 C 1.53039 * 109.53876 * 298.51091 * 14 13 12 24 24 C 1.46922 * 120.63138 * 185.22006 * 11 9 8 25 25 S 1.75880 * 125.20428 * 269.95944 * 3 2 1 26 26 H 1.08999 * 109.46965 * 59.99563 * 1 2 3 27 27 H 1.08999 * 109.47351 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46859 * 299.99854 * 1 2 3 29 29 H 1.08997 * 109.47705 * 240.00300 * 2 1 3 30 30 H 1.09007 * 109.47567 * 119.99837 * 2 1 3 31 31 H 1.07995 * 122.54032 * 359.97438 * 4 3 2 32 32 H 1.07992 * 122.53911 * 179.72784 * 5 4 3 33 33 H 1.09000 * 109.46780 * 210.00043 * 7 6 5 34 34 H 1.08994 * 109.46911 * 330.00414 * 7 6 5 35 35 H 0.96996 * 120.00181 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.58478 * 246.19423 * 12 11 9 37 37 H 1.08994 * 109.58797 * 6.62317 * 12 11 9 38 38 H 1.09001 * 109.63877 * 294.86260 * 13 12 11 39 39 H 1.09006 * 109.43123 * 174.72274 * 13 12 11 40 40 H 1.08996 * 109.45723 * 58.53286 * 14 13 12 41 41 H 0.96999 * 120.00222 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.49513 * 301.41457 * 23 14 13 43 43 H 1.09001 * 109.52363 * 181.33403 * 23 14 13 44 44 H 1.08998 * 109.58880 * 353.38573 * 24 11 9 45 45 H 1.09011 * 109.58360 * 113.65977 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2887 2.1458 1.0900 5 6 2.7432 3.4298 0.8430 6 6 2.8565 3.7473 -0.4477 7 6 3.3271 5.0775 -0.9769 8 7 4.7819 5.0482 -1.1474 9 6 5.4277 6.1356 -1.6131 10 8 4.7959 7.1086 -1.9771 11 7 6.7740 6.1446 -1.6752 12 6 7.5468 4.9402 -1.3417 13 6 8.4879 4.6235 -2.5139 14 6 9.3441 5.8546 -2.8200 15 6 10.2951 5.5371 -3.9453 16 1 10.2577 6.1081 -4.8612 17 6 11.2128 4.5177 -3.8053 18 7 11.2580 3.8220 -2.6902 19 14 12.3910 4.1238 -5.2004 20 1 12.1374 5.0446 -6.3375 21 1 13.7894 4.2925 -4.7298 22 1 12.1835 2.7215 -5.6426 23 6 8.4390 7.0184 -3.2304 24 6 7.4971 7.3605 -2.0719 25 16 2.3713 2.3765 -1.4371 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.1520 1.7602 2.0895 32 1 2.9839 4.1232 1.6351 33 1 2.8525 5.2745 -1.9382 34 1 3.0596 5.8643 -0.2717 35 1 5.2802 4.2463 -0.9251 36 1 8.1307 5.1191 -0.4388 37 1 6.8675 4.1033 -1.1803 38 1 7.9012 4.3605 -3.3940 39 1 9.1346 3.7885 -2.2443 40 1 9.9120 6.1318 -1.9320 41 1 11.9040 3.1051 -2.5917 42 1 7.8527 6.7327 -4.1038 43 1 9.0505 7.8880 -3.4713 44 1 6.7850 8.1210 -2.3922 45 1 8.0750 7.7342 -1.2264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541913677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:08 Heat of formation + Delta-G solvation = -8.961396 kcal Electronic energy + Delta-G solvation = -24504.810330 eV Core-core repulsion = 21034.372923 eV Total energy + Delta-G solvation = -3470.437407 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96161 -38.42611 -36.94566 -35.16640 -33.72506 -33.38376 -31.27908 -30.06926 -29.38610 -26.58283 -25.72388 -23.67633 -22.84711 -22.45291 -22.15797 -20.19140 -19.37012 -18.73904 -17.81450 -16.98455 -16.24904 -16.03702 -15.54179 -15.13627 -14.63165 -14.51465 -14.27459 -14.21138 -13.63011 -13.59414 -13.20970 -13.05216 -12.76914 -12.66487 -12.41302 -12.34994 -12.20700 -12.05065 -11.66479 -11.55547 -11.31930 -11.30108 -10.96421 -10.85408 -10.60597 -10.37002 -10.16828 -9.79066 -9.55952 -9.14568 -8.99449 -8.90407 -8.78262 -8.65776 -8.37919 -7.88287 -6.03270 -4.09059 0.67720 1.36718 1.78864 2.43567 3.16499 3.27047 3.35615 3.39998 3.55912 4.30021 4.38404 4.41044 4.52350 4.70269 4.91811 5.07012 5.15757 5.26161 5.38352 5.43068 5.48445 5.54905 5.58403 5.60679 5.80368 5.80658 5.95813 5.96772 6.02641 6.09054 6.19056 6.27105 6.29054 6.48652 6.60740 6.69537 6.87411 7.01013 7.15913 7.23451 7.46055 7.67717 7.92897 8.03758 8.31089 8.40975 8.93652 8.94827 9.56072 11.02188 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002767 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.732563 B =10117.112074 C =11364.699041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.055 4.055 3 C -0.172 4.172 4 C -0.143 4.143 5 C -0.112 4.112 6 C -0.202 4.202 7 C 0.214 3.786 8 N -0.749 5.749 9 C 0.707 3.293 10 O -0.605 6.605 11 N -0.617 5.617 12 C 0.110 3.890 13 C -0.123 4.123 14 C 0.049 3.951 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.060 3.940 18 N -0.892 5.892 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.124 4.124 24 C 0.129 3.871 25 S 0.119 5.881 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.039 0.961 39 H 0.103 0.897 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.079 0.921 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.069 -6.510 8.761 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.290 4.290 4 C -0.173 4.173 5 C -0.143 4.143 6 C -0.320 4.320 7 C 0.088 3.912 8 N -0.408 5.408 9 C 0.408 3.592 10 O -0.485 6.485 11 N -0.354 5.354 12 C -0.013 4.013 13 C -0.161 4.161 14 C 0.030 3.970 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.162 4.162 24 C 0.007 3.993 25 S 0.384 5.616 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.236 0.764 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.121 0.879 40 H 0.045 0.955 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.097 0.903 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.507 -6.184 7.009 21.631 hybrid contribution 1.097 -0.543 0.941 1.544 sum -18.410 -6.728 7.950 21.152 Atomic orbital electron populations 1.21789 0.94270 1.01999 1.02493 1.20121 0.96181 0.89717 1.03387 1.24631 1.07476 1.00834 0.96044 1.20057 1.03783 0.94154 0.99287 1.20160 1.01333 0.96971 0.95864 1.24485 1.10610 1.00166 0.96757 1.19369 0.80160 0.90692 1.00958 1.45358 1.07080 1.16201 1.72184 1.15815 0.82039 0.82828 0.78482 1.90855 1.66229 1.35295 1.56113 1.47414 1.03222 1.14276 1.70446 1.21989 0.94149 0.84899 1.00233 1.22092 0.96390 1.03447 0.94190 1.18630 0.91886 0.89634 0.96828 1.21260 1.16187 1.16294 1.01059 0.92631 1.24960 0.97260 0.96156 0.95647 1.69841 1.36193 1.21887 1.25222 0.86568 0.80916 0.78140 0.82569 1.19831 1.21066 1.21089 1.22018 0.97291 1.00511 0.96401 1.21577 0.94469 0.85534 0.97739 1.84446 1.63736 1.04548 1.08862 0.92414 0.92020 0.92299 0.90688 0.89942 0.84378 0.84124 0.90787 0.90036 0.76440 0.91970 0.92588 0.94258 0.87862 0.95456 0.93072 0.92955 0.92141 0.90261 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 37.16 0.37 -0.51 16 2 C -0.05 -0.37 6.43 -27.88 -0.18 -0.55 16 3 C -0.17 -1.55 5.76 -36.00 -0.21 -1.75 16 4 C -0.14 -1.27 10.05 -41.20 -0.41 -1.68 16 5 C -0.11 -1.08 10.05 -41.20 -0.41 -1.50 16 6 C -0.20 -2.20 5.88 -36.00 -0.21 -2.41 16 7 C 0.21 2.69 6.17 -5.19 -0.03 2.66 16 8 N -0.75 -10.99 5.46 -66.41 -0.36 -11.35 16 9 C 0.71 12.98 8.30 -86.92 -0.72 12.25 16 10 O -0.60 -12.81 15.77 5.29 0.08 -12.72 16 11 N -0.62 -11.44 2.97 -178.23 -0.53 -11.97 16 12 C 0.11 1.98 6.42 -3.49 -0.02 1.96 16 13 C -0.12 -2.71 5.17 -26.38 -0.14 -2.85 16 14 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 15 C -0.51 -13.62 8.56 -34.44 -0.29 -13.92 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 17 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 18 N -0.89 -24.41 11.30 55.43 0.63 -23.78 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.12 -2.58 5.30 -26.61 -0.14 -2.72 16 24 C 0.13 2.43 6.44 -3.72 -0.02 2.40 16 25 S 0.12 1.22 23.31 -107.50 -2.51 -1.28 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.40 5.42 5.95 -40.82 -0.24 5.17 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 0.87 5.64 -51.93 -0.29 0.58 16 38 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.10 2.53 6.03 -51.93 -0.31 2.22 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.08 1.49 7.00 -51.93 -0.36 1.13 16 45 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 LS Contribution 374.07 15.07 5.64 5.64 Total: -1.00 -29.85 374.07 -11.88 -41.73 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.10 Total: 3.97 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.71 Total: -6.11 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.26 Total: -47.10 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.28 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.85 -11.88 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541913677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.769 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds