Wall clock time and date at job start Tue Mar 31 2020 13:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50706 * 109.47198 * 2 1 4 4 C 1.33393 * 125.20000 * 90.00179 * 3 2 1 5 5 C 1.38429 * 114.92028 * 179.97438 * 4 3 2 6 6 C 1.33393 * 114.91788 * 359.97438 * 5 4 3 7 7 C 1.50702 * 125.20019 * 179.97438 * 6 5 4 8 8 N 1.46504 * 109.46805 * 90.00144 * 7 6 5 9 9 C 1.34776 * 119.99686 * 179.97438 * 8 7 6 10 10 O 1.21589 * 120.00192 * 355.01845 * 9 8 7 11 11 N 1.34776 * 119.99780 * 175.01108 * 9 8 7 12 12 C 1.46928 * 120.62957 * 4.95017 * 11 9 8 13 13 C 1.53622 * 108.54299 * 126.36479 * 12 11 9 14 14 C 1.53045 * 109.24221 * 54.85441 * 13 12 11 15 15 C 1.50706 * 109.44762 * 178.49567 * 14 13 12 16 16 H 1.08002 * 119.99945 * 120.06141 * 15 14 13 17 17 C 1.37874 * 119.99779 * 300.06355 * 15 14 13 18 18 N 1.31508 * 120.00597 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99562 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47400 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47269 * 119.99950 * 19 17 15 22 22 H 1.48496 * 109.47618 * 239.99683 * 19 17 15 23 23 C 1.53039 * 109.53876 * 298.51091 * 14 13 12 24 24 C 1.46922 * 120.63138 * 185.22006 * 11 9 8 25 25 S 1.75880 * 125.20428 * 269.95944 * 3 2 1 26 26 H 1.08999 * 109.46965 * 59.99563 * 1 2 3 27 27 H 1.08999 * 109.47351 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46859 * 299.99854 * 1 2 3 29 29 H 1.08997 * 109.47705 * 240.00300 * 2 1 3 30 30 H 1.09007 * 109.47567 * 119.99837 * 2 1 3 31 31 H 1.07995 * 122.54032 * 359.97438 * 4 3 2 32 32 H 1.07992 * 122.53911 * 179.72784 * 5 4 3 33 33 H 1.09000 * 109.46780 * 210.00043 * 7 6 5 34 34 H 1.08994 * 109.46911 * 330.00414 * 7 6 5 35 35 H 0.96996 * 120.00181 * 359.97438 * 8 7 6 36 36 H 1.09003 * 109.58478 * 246.19423 * 12 11 9 37 37 H 1.08994 * 109.58797 * 6.62317 * 12 11 9 38 38 H 1.09001 * 109.63877 * 294.86260 * 13 12 11 39 39 H 1.09006 * 109.43123 * 174.72274 * 13 12 11 40 40 H 1.08996 * 109.45723 * 58.53286 * 14 13 12 41 41 H 0.96999 * 120.00222 * 180.02562 * 18 17 15 42 42 H 1.09003 * 109.49513 * 301.41457 * 23 14 13 43 43 H 1.09001 * 109.52363 * 181.33403 * 23 14 13 44 44 H 1.08998 * 109.58880 * 353.38573 * 24 11 9 45 45 H 1.09011 * 109.58360 * 113.65977 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2887 2.1458 1.0900 5 6 2.7432 3.4298 0.8430 6 6 2.8565 3.7473 -0.4477 7 6 3.3271 5.0775 -0.9769 8 7 4.7819 5.0482 -1.1474 9 6 5.4277 6.1356 -1.6131 10 8 4.7959 7.1086 -1.9771 11 7 6.7740 6.1446 -1.6752 12 6 7.5468 4.9402 -1.3417 13 6 8.4879 4.6235 -2.5139 14 6 9.3441 5.8546 -2.8200 15 6 10.2951 5.5371 -3.9453 16 1 10.2577 6.1081 -4.8612 17 6 11.2128 4.5177 -3.8053 18 7 11.2580 3.8220 -2.6902 19 14 12.3910 4.1238 -5.2004 20 1 12.1374 5.0446 -6.3375 21 1 13.7894 4.2925 -4.7298 22 1 12.1835 2.7215 -5.6426 23 6 8.4390 7.0184 -3.2304 24 6 7.4971 7.3605 -2.0719 25 16 2.3713 2.3765 -1.4371 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.1520 1.7602 2.0895 32 1 2.9839 4.1232 1.6351 33 1 2.8525 5.2745 -1.9382 34 1 3.0596 5.8643 -0.2717 35 1 5.2802 4.2463 -0.9251 36 1 8.1307 5.1191 -0.4388 37 1 6.8675 4.1033 -1.1803 38 1 7.9012 4.3605 -3.3940 39 1 9.1346 3.7885 -2.2443 40 1 9.9120 6.1318 -1.9320 41 1 11.9040 3.1051 -2.5917 42 1 7.8527 6.7327 -4.1038 43 1 9.0505 7.8880 -3.4713 44 1 6.7850 8.1210 -2.3922 45 1 8.0750 7.7342 -1.2264 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541913677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:07 Heat of formation + Delta-G solvation = -23.972186 kcal Electronic energy + Delta-G solvation = -24505.461246 eV Core-core repulsion = 21034.372923 eV Total energy + Delta-G solvation = -3471.088324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.40337 -39.23615 -38.50036 -36.25320 -35.34327 -34.43524 -32.97517 -31.68716 -30.40045 -28.05070 -26.89539 -24.84772 -24.26553 -23.73959 -23.07165 -21.76498 -20.61161 -19.85188 -19.15214 -18.32111 -17.81215 -17.35118 -16.66381 -16.53935 -16.17953 -15.53894 -15.29539 -15.03029 -14.92596 -14.88771 -14.66808 -14.40904 -14.25862 -13.92103 -13.69899 -13.28180 -13.22483 -13.11709 -12.97288 -12.83632 -12.73262 -12.42662 -12.28112 -12.14808 -12.00348 -11.91035 -11.54467 -11.50084 -11.28919 -10.98727 -10.78584 -10.40219 -10.26905 -9.53983 -9.44857 -9.39691 -8.07632 -6.20409 -0.08735 0.60671 1.04580 1.39858 1.43309 1.53215 1.58909 1.94706 2.10821 2.44311 2.96907 3.18847 3.60443 3.83033 4.09193 4.19203 4.20716 4.23964 4.36147 4.42688 4.46362 4.50678 4.56830 4.59624 4.67730 4.73914 4.84816 4.88971 4.99119 4.99642 5.05968 5.20912 5.21965 5.25929 5.30664 5.35667 5.39125 5.43540 5.50295 5.59266 5.66003 5.98356 6.02840 6.13192 6.40280 6.88834 6.92716 7.47132 7.51117 8.95835 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015341 B = 0.002767 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1824.732563 B =10117.112074 C =11364.699041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.164 4.164 4 C -0.150 4.150 5 C -0.102 4.102 6 C -0.219 4.219 7 C 0.217 3.783 8 N -0.735 5.735 9 C 0.705 3.295 10 O -0.634 6.634 11 N -0.621 5.621 12 C 0.122 3.878 13 C -0.113 4.113 14 C 0.046 3.954 15 C -0.533 4.533 16 H 0.046 0.954 17 C 0.018 3.982 18 N -0.911 5.911 19 Si 0.948 3.052 20 H -0.273 1.273 21 H -0.280 1.280 22 H -0.281 1.281 23 C -0.114 4.114 24 C 0.135 3.865 25 S 0.089 5.911 26 H 0.048 0.952 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.063 0.937 34 H 0.086 0.914 35 H 0.405 0.595 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.024 0.976 39 H 0.080 0.920 40 H 0.006 0.994 41 H 0.261 0.739 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.896 -7.585 9.972 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 C -0.282 4.282 4 C -0.179 4.179 5 C -0.134 4.134 6 C -0.337 4.337 7 C 0.092 3.908 8 N -0.394 5.394 9 C 0.406 3.594 10 O -0.517 6.517 11 N -0.357 5.357 12 C 0.000 4.000 13 C -0.152 4.152 14 C 0.027 3.973 15 C -0.571 4.571 16 H 0.064 0.936 17 C -0.181 4.181 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.198 1.198 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.152 4.152 24 C 0.012 3.988 25 S 0.355 5.645 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.116 0.884 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.243 0.757 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.043 0.957 39 H 0.098 0.902 40 H 0.025 0.975 41 H 0.071 0.929 42 H 0.057 0.943 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.349 -7.282 8.231 23.127 hybrid contribution 1.321 -0.255 0.586 1.467 sum -19.028 -7.537 8.817 22.285 Atomic orbital electron populations 1.21774 0.93554 1.02849 1.02132 1.20243 0.96731 0.88439 1.04184 1.24956 1.06537 1.01562 0.95114 1.20316 1.03540 0.93763 1.00314 1.20412 0.99835 0.97515 0.95635 1.24263 1.12556 0.99592 0.97243 1.19369 0.78638 0.92092 1.00674 1.45330 1.08004 1.15231 1.70852 1.15938 0.81767 0.83265 0.78400 1.90833 1.66698 1.36679 1.57455 1.47408 1.03516 1.14182 1.70604 1.21836 0.94020 0.85754 0.98432 1.21857 0.96360 1.01781 0.95221 1.18603 0.92116 0.91423 0.95122 1.21577 1.17377 1.16579 1.01601 0.93562 1.25619 0.98665 0.96087 0.97748 1.69942 1.36638 1.22064 1.26408 0.85666 0.79068 0.77872 0.79984 1.19792 1.20583 1.20649 1.21868 0.97063 0.99547 0.96748 1.21483 0.94137 0.85808 0.97348 1.84549 1.64437 1.05259 1.10300 0.93301 0.90606 0.92133 0.90629 0.88370 0.82103 0.82776 0.91872 0.89582 0.75701 0.91196 0.89778 0.95731 0.90168 0.97544 0.92930 0.94330 0.91597 0.90124 0.90981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.06 -0.65 6.43 29.85 0.19 -0.46 16 3 C -0.16 -2.63 5.76 24.59 0.14 -2.48 16 4 C -0.15 -2.27 10.05 21.22 0.21 -2.06 16 5 C -0.10 -1.75 10.05 21.22 0.21 -1.54 16 6 C -0.22 -4.48 5.88 24.59 0.14 -4.34 16 7 C 0.22 5.28 6.17 85.63 0.53 5.81 16 8 N -0.74 -20.67 5.46 -482.29 -2.63 -23.30 16 9 C 0.70 25.20 8.30 179.06 1.49 26.68 16 10 O -0.63 -26.51 15.77 -4.00 -0.06 -26.58 16 11 N -0.62 -22.41 2.97 -836.07 -2.48 -24.89 16 12 C 0.12 4.26 6.42 86.51 0.56 4.82 16 13 C -0.11 -5.05 5.17 30.82 0.16 -4.89 16 14 C 0.05 2.22 2.06 -11.51 -0.02 2.19 16 15 C -0.53 -28.91 8.56 25.60 0.22 -28.69 16 16 H 0.05 2.53 7.74 -2.91 -0.02 2.50 16 17 C 0.02 0.95 5.30 84.66 0.45 1.40 16 18 N -0.91 -50.12 11.30 21.45 0.24 -49.88 16 19 Si 0.95 42.99 29.54 68.60 2.03 45.01 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 23 C -0.11 -4.76 5.30 30.67 0.16 -4.60 16 24 C 0.14 4.97 6.44 86.36 0.56 5.53 16 25 S 0.09 1.77 23.31 -56.49 -1.32 0.45 16 26 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 32 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.40 10.29 5.95 -92.71 -0.55 9.74 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.08 2.46 5.64 -2.39 -0.01 2.44 16 38 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 3.98 6.03 -2.38 -0.01 3.96 16 40 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.08 2.98 7.00 -2.39 -0.02 2.96 16 45 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 Total: -1.00 -63.69 374.07 1.92 -61.77 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.43 Total: 20.75 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.71 Total: -3.34 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -4.87 Total: -98.07 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 1.77 SS G_CDS: -1.32 Total: 0.45 kcal Total: -63.69 1.92 -61.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541913677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.799 kcal (2) G-P(sol) polarization free energy of solvation -63.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds