Wall clock time and date at job start Tue Mar 31 2020 12:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29027 * 124.91845 * 2 1 4 4 C 1.31779 * 117.12786 * 179.97438 * 3 2 1 5 5 C 1.50705 * 122.75113 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47015 * 305.02875 * 5 4 3 7 7 C 1.53002 * 109.46972 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.46946 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00166 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99585 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.62730 * 180.02562 * 10 8 7 12 12 C 1.53191 * 108.89109 * 126.46248 * 11 10 8 13 13 C 1.53044 * 109.31440 * 54.56430 * 12 11 10 14 14 C 1.50696 * 109.46055 * 178.62547 * 13 12 11 15 15 H 1.08006 * 119.99855 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00185 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00067 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00259 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47274 * 60.00338 * 18 16 14 20 20 H 1.48499 * 109.47499 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47370 * 300.00402 * 18 16 14 22 22 C 1.53040 * 109.53662 * 298.63203 * 13 12 11 23 23 C 1.46957 * 120.65462 * 359.81587 * 10 8 7 24 24 C 1.33637 * 114.50073 * 0.23113 * 4 3 2 25 25 S 1.70983 * 124.91504 * 179.97438 * 2 1 3 26 26 H 1.09004 * 109.46839 * 90.00871 * 1 2 3 27 27 H 1.09002 * 109.47329 * 210.00425 * 1 2 3 28 28 H 1.08993 * 109.47528 * 330.01167 * 1 2 3 29 29 H 1.09002 * 109.46970 * 185.02474 * 5 4 3 30 30 H 1.08999 * 109.46766 * 65.02877 * 5 4 3 31 31 H 1.08997 * 109.47213 * 59.99675 * 6 5 4 32 32 H 1.09002 * 109.46850 * 299.99682 * 6 5 4 33 33 H 1.09002 * 109.47153 * 59.99514 * 7 6 5 34 34 H 1.08999 * 109.46626 * 299.99890 * 7 6 5 35 35 H 1.09002 * 109.58861 * 6.60251 * 11 10 8 36 36 H 1.08996 * 109.58519 * 246.32142 * 11 10 8 37 37 H 1.09003 * 109.49294 * 174.51508 * 12 11 10 38 38 H 1.09001 * 109.49969 * 294.57596 * 12 11 10 39 39 H 1.08994 * 109.45986 * 58.65006 * 13 12 11 40 40 H 0.96999 * 120.00746 * 179.97438 * 17 16 14 41 41 H 1.08995 * 109.49643 * 181.31582 * 22 13 12 42 42 H 1.08996 * 109.49892 * 301.41776 * 22 13 12 43 43 H 1.09001 * 109.46843 * 113.75468 * 23 10 8 44 44 H 1.08997 * 109.71602 * 353.46961 * 23 10 8 45 45 H 1.07998 * 126.04233 * 179.77030 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8793 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2334 2.9495 -1.1819 7 6 5.2283 4.1119 -1.1828 8 6 4.9358 5.0225 -2.3474 9 8 4.0219 4.7668 -3.1025 10 7 5.6898 6.1212 -2.5496 11 6 5.4166 7.0189 -3.6802 12 6 5.2537 8.4473 -3.1512 13 6 6.4888 8.8274 -2.3313 14 6 6.3471 10.2441 -1.8374 15 1 5.4649 10.8162 -2.0839 16 6 7.3438 10.8099 -1.0708 17 7 8.4183 10.1134 -0.7711 18 14 7.1685 12.5661 -0.4592 19 1 5.9560 12.6755 0.3913 20 1 8.3667 12.9352 0.3365 21 1 7.0435 13.4843 -1.6196 22 6 6.6201 7.8815 -1.1353 23 6 6.7981 6.4469 -1.6412 24 6 3.9354 -0.4006 -0.0039 25 16 2.4856 -1.4021 0.0006 26 1 -0.3633 -0.0002 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5136 29 1 5.5449 1.6352 -0.0894 30 1 4.4369 2.5833 0.9312 31 1 3.2192 3.3388 -1.0925 32 1 4.3272 2.3907 -2.1131 33 1 6.2423 3.7221 -1.2725 34 1 5.1348 4.6707 -0.2516 35 1 4.4996 6.7077 -4.1805 36 1 6.2475 6.9826 -4.3846 37 1 5.1476 9.1358 -3.9896 38 1 4.3665 8.5028 -2.5204 39 1 7.3782 8.7480 -2.9564 40 1 9.1197 10.5115 -0.2321 41 1 7.4866 8.1673 -0.5390 42 1 5.7204 7.9421 -0.5231 43 1 7.7436 6.3635 -2.1771 44 1 6.7952 5.7587 -0.7960 45 1 4.9545 -0.7581 -0.0078 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541978811.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:30 Heat of formation + Delta-G solvation = -18.045623 kcal Electronic energy + Delta-G solvation = -24267.583029 eV Core-core repulsion = 20796.751701 eV Total energy + Delta-G solvation = -3470.831329 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.20871 -39.60842 -36.87258 -34.83839 -33.49222 -32.39725 -31.22841 -30.10402 -28.94962 -27.71989 -26.04985 -23.74506 -22.79601 -22.34920 -21.56111 -19.93886 -19.67110 -18.22686 -17.73038 -16.80635 -16.11271 -15.77638 -15.59897 -15.19871 -15.15787 -14.55641 -14.18651 -14.05450 -13.54091 -13.30318 -13.14215 -13.03589 -12.86869 -12.60669 -12.47948 -12.41701 -12.29557 -11.83941 -11.62939 -11.44886 -11.27757 -11.12491 -10.92606 -10.69519 -10.65983 -10.37457 -10.10115 -9.83469 -9.65310 -9.64297 -9.33554 -9.16642 -8.92602 -8.89774 -8.38255 -7.96602 -6.03855 -4.09872 0.47017 1.11344 1.48093 2.57285 3.05717 3.29451 3.34017 3.37327 3.53424 3.81811 4.40360 4.62829 4.74415 4.87865 4.98906 4.99682 5.11335 5.18408 5.25137 5.29073 5.42543 5.50534 5.55734 5.62713 5.65465 5.76105 5.84296 5.97060 6.01149 6.10512 6.18114 6.20823 6.30625 6.41732 6.48148 6.67408 6.91666 7.04851 7.16214 7.28080 7.55581 7.65896 7.91609 7.97916 8.03718 8.39797 8.63219 8.93282 9.55144 11.01635 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.002092 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.189862 B =13381.245733 C =13541.722424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.053 3.947 3 N -0.465 5.465 4 C 0.080 3.920 5 C -0.047 4.047 6 C -0.093 4.093 7 C -0.139 4.139 8 C 0.510 3.490 9 O -0.560 6.560 10 N -0.602 5.602 11 C 0.111 3.889 12 C -0.123 4.123 13 C 0.049 3.951 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.061 3.939 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.278 1.278 22 C -0.125 4.125 23 C 0.103 3.897 24 C -0.263 4.263 25 S 0.099 5.901 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.027 0.973 40 H 0.261 0.739 41 H 0.104 0.896 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 -22.805 3.240 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.226 4.226 3 N -0.180 5.180 4 C -0.051 4.051 5 C -0.087 4.087 6 C -0.131 4.131 7 C -0.179 4.179 8 C 0.298 3.702 9 O -0.440 6.440 10 N -0.335 5.335 11 C -0.011 4.011 12 C -0.161 4.161 13 C 0.030 3.970 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.140 4.140 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.163 4.163 23 C -0.019 4.019 24 C -0.402 4.402 25 S 0.354 5.646 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.123 0.877 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.774 -23.484 2.944 25.242 hybrid contribution 0.796 1.714 0.447 1.942 sum -7.978 -21.770 3.391 23.433 Atomic orbital electron populations 1.20461 0.85160 1.04211 1.04056 1.27088 1.01829 0.90760 1.02912 1.66085 1.04631 1.31409 1.15881 1.20324 0.90174 0.94260 1.00354 1.20285 0.95362 0.92677 1.00350 1.21218 1.00088 0.94578 0.97263 1.21684 1.01231 0.96782 0.98199 1.20581 0.81744 0.81525 0.86321 1.90636 1.31270 1.73747 1.48311 1.48279 1.32415 1.23706 1.29056 1.21662 1.00918 0.90653 0.87853 1.22005 1.01080 0.93011 1.00048 1.18629 0.92181 0.94014 0.92164 1.21176 1.04149 0.97658 1.32023 0.92764 1.24956 0.95222 0.97681 0.96109 1.69819 1.08089 1.36585 1.38662 0.86673 0.77404 0.85123 0.78892 1.20330 1.21313 1.20315 1.22015 1.02984 0.90440 1.00876 1.22032 0.88167 0.99667 0.92043 1.26810 1.02990 0.95662 1.14691 1.83910 0.98377 1.13233 1.69114 0.89451 0.90157 0.89116 0.90111 0.89836 0.90279 0.91553 0.89179 0.88777 0.90462 0.92380 0.92211 0.92991 0.95491 0.92928 0.87747 0.94243 0.92049 0.91354 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.46 36.00 0.38 -0.14 16 2 C 0.05 0.52 7.39 -13.46 -0.10 0.42 16 3 N -0.46 -5.82 10.34 -8.06 -0.08 -5.90 16 4 C 0.08 0.91 6.08 -84.22 -0.51 0.40 16 5 C -0.05 -0.48 5.71 -27.88 -0.16 -0.64 16 6 C -0.09 -1.20 4.40 -26.73 -0.12 -1.31 16 7 C -0.14 -1.81 4.05 -27.88 -0.11 -1.93 16 8 C 0.51 8.97 7.70 -10.98 -0.08 8.88 16 9 O -0.56 -11.58 15.39 5.56 0.09 -11.49 16 10 N -0.60 -10.93 2.98 -172.77 -0.51 -11.44 16 11 C 0.11 2.09 6.43 -3.71 -0.02 2.07 16 12 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 13 C 0.05 1.16 2.06 -91.73 -0.19 0.97 16 14 C -0.51 -13.65 8.56 -34.44 -0.29 -13.95 16 15 H 0.05 1.45 7.74 -52.48 -0.41 1.04 16 16 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -24.33 11.30 55.43 0.63 -23.70 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.12 -2.72 5.15 -26.63 -0.14 -2.86 16 23 C 0.10 1.81 6.33 -3.71 -0.02 1.78 16 24 C -0.26 -2.44 11.07 29.12 0.32 -2.12 16 25 S 0.10 0.82 23.18 -107.50 -2.49 -1.67 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.64 8.03 -51.93 -0.42 0.23 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 32 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 33 H 0.09 0.98 7.95 -51.93 -0.41 0.57 16 34 H 0.09 1.15 7.69 -51.93 -0.40 0.75 16 35 H 0.08 1.46 7.01 -51.93 -0.36 1.10 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.10 2.52 6.03 -51.93 -0.31 2.21 16 42 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 45 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -31.24 374.38 -10.29 -41.54 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.24 Total: 0.78 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.29 Total: -9.58 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.03 Total: -41.04 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.49 Total: -1.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.24 -10.29 -41.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541978811.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.491 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds