Wall clock time and date at job start Tue Mar 31 2020 14:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00430 * 2 1 4 4 C 1.53004 * 109.47084 * 126.31394 * 3 2 1 5 5 H 1.09004 * 109.47299 * 305.18010 * 4 3 2 6 6 C 1.50696 * 109.47150 * 65.18255 * 4 3 2 7 7 O 1.21270 * 120.00184 * 97.23339 * 6 4 3 8 8 N 1.34784 * 119.99727 * 277.23822 * 6 4 3 9 9 C 1.39467 * 119.99671 * 185.33166 * 8 6 4 10 10 C 1.38600 * 119.57855 * 174.68966 * 9 8 6 11 11 C 1.40810 * 118.79370 * 179.78323 * 10 9 8 12 12 C 1.41546 * 120.99102 * 180.25627 * 11 10 9 13 13 H 1.07999 * 119.99644 * 206.66831 * 12 11 10 14 14 C 1.40030 * 120.00273 * 26.66781 * 12 11 10 15 15 N 1.30741 * 119.99962 * 10.67735 * 14 12 11 16 16 Si 1.86800 * 119.99973 * 190.67106 * 14 12 11 17 17 H 1.48497 * 109.46992 * 94.99271 * 16 14 12 18 18 H 1.48505 * 109.47168 * 214.98853 * 16 14 12 19 19 H 1.48494 * 109.47323 * 334.99084 * 16 14 12 20 20 C 1.41169 * 118.00845 * 0.48282 * 11 10 9 21 21 C 1.37588 * 119.01455 * 359.75068 * 20 11 10 22 22 N 1.32081 * 121.10964 * 0.02562 * 21 20 11 23 23 C 1.50702 * 109.46883 * 185.18213 * 4 3 2 24 24 C 1.38236 * 120.00156 * 120.00262 * 23 4 3 25 25 C 1.38231 * 119.99961 * 180.02562 * 24 23 4 26 26 C 1.38235 * 120.00098 * 359.94809 * 25 24 23 27 27 C 1.38231 * 119.99905 * 0.02562 * 26 25 24 28 28 C 1.38230 * 120.00404 * 0.07057 * 27 26 25 29 29 H 1.08006 * 119.99723 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00350 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00015 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46496 * 6.31853 * 3 2 1 33 33 H 1.08995 * 109.47420 * 246.31537 * 3 2 1 34 34 H 0.97001 * 120.00032 * 5.33718 * 8 6 4 35 35 H 1.08001 * 120.60135 * 359.97438 * 10 9 8 36 36 H 0.96998 * 120.00310 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.48842 * 179.78158 * 20 11 10 38 38 H 1.08004 * 119.44312 * 180.02562 * 21 20 11 39 39 H 1.08002 * 119.99803 * 359.97438 * 24 23 4 40 40 H 1.08000 * 119.99866 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.99998 * 179.72305 * 26 25 24 42 42 H 1.08002 * 119.99767 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00733 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0584 1.3195 1.1624 5 1 2.5306 1.1195 2.0949 6 6 4.1056 0.2589 0.9405 7 8 5.1751 0.5556 0.4517 8 7 3.8536 -1.0195 1.2852 9 6 4.8595 -1.9802 1.1840 10 6 4.6257 -3.2667 1.6438 11 6 5.6512 -4.2247 1.5292 12 6 5.4609 -5.5534 1.9786 13 1 6.3091 -6.1445 2.2909 14 6 4.1729 -6.1014 2.0183 15 7 3.1771 -5.4725 1.4507 16 14 3.8775 -7.7312 2.8820 17 1 3.4293 -7.4790 4.2751 18 1 2.8305 -8.4938 2.1557 19 1 5.1377 -8.5164 2.9020 20 6 6.8765 -3.8192 0.9572 21 6 7.0168 -2.5176 0.5337 22 7 6.0282 -1.6502 0.6549 23 6 3.7207 2.6710 1.2399 24 6 3.5956 3.4374 2.3835 25 6 4.2027 4.6773 2.4544 26 6 4.9357 5.1503 1.3820 27 6 5.0611 4.3837 0.2387 28 6 4.4525 3.1446 0.1670 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3606 2.1304 0.1131 33 1 2.6027 1.4133 -0.9410 34 1 2.9726 -1.2713 1.6036 35 1 3.6731 -3.5303 2.0792 36 1 2.2848 -5.8518 1.4785 37 1 7.6914 -4.5203 0.8532 38 1 7.9511 -2.2000 0.0947 39 1 3.0230 3.0678 3.2213 40 1 4.1047 5.2762 3.3477 41 1 5.4062 6.1209 1.4357 42 1 5.6335 4.7534 -0.5993 43 1 4.5501 2.5458 -0.7265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548287301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:54 Heat of formation + Delta-G solvation = 42.650931 kcal Electronic energy + Delta-G solvation = -26110.283803 eV Core-core repulsion = 22506.640523 eV Total energy + Delta-G solvation = -3603.643280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.28408 -38.89054 -37.71325 -35.53349 -34.35920 -33.69947 -32.41377 -30.81298 -30.54364 -29.17170 -28.14374 -26.00484 -24.68563 -22.56162 -22.43737 -21.95348 -20.78170 -19.86348 -19.42331 -17.65759 -16.93904 -16.71893 -15.88017 -15.60879 -15.29622 -14.99022 -14.59348 -14.25122 -14.21029 -14.09539 -13.79213 -13.46405 -13.22801 -13.02363 -12.73435 -12.63337 -12.60211 -12.33970 -11.81374 -11.69009 -11.42169 -11.27221 -11.23251 -10.95604 -10.90546 -10.76146 -10.28039 -10.14207 -9.72590 -9.45521 -9.39624 -9.29180 -8.78661 -8.64430 -7.98578 -7.72692 -7.04684 -6.77415 -4.64145 1.38039 1.51356 2.23075 2.54960 2.77443 3.00705 3.04445 3.18595 3.45320 3.58080 3.84148 3.96935 4.51969 4.67519 4.81282 4.96860 5.04356 5.08813 5.10552 5.25284 5.27621 5.33310 5.58119 5.60226 5.66580 5.71315 5.90320 5.94801 5.98073 6.06406 6.14319 6.50257 6.56737 6.59342 6.63206 6.63507 6.68779 6.75166 6.79119 6.94091 7.07291 7.10768 7.37280 7.45335 7.76817 7.93348 8.20348 8.41595 8.68993 8.74073 8.88764 9.67199 10.08055 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003285 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.513697 B = 8520.790792 C = 9507.799315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.164 4.164 3 C -0.077 4.077 4 C -0.065 4.065 5 H 0.097 0.903 6 C 0.506 3.494 7 O -0.471 6.471 8 N -0.657 5.657 9 C 0.335 3.665 10 C -0.239 4.239 11 C 0.143 3.857 12 C -0.455 4.455 13 H 0.081 0.919 14 C 0.076 3.924 15 N -0.795 5.795 16 Si 0.914 3.086 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.282 4.282 21 C 0.117 3.883 22 N -0.551 5.551 23 C -0.070 4.070 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.076 4.076 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.407 0.593 35 H 0.131 0.869 36 H 0.281 0.719 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.501 13.521 0.649 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.182 4.182 3 C -0.114 4.114 4 C -0.087 4.087 5 H 0.115 0.885 6 C 0.289 3.711 7 O -0.341 6.341 8 N -0.304 5.304 9 C 0.110 3.890 10 C -0.264 4.264 11 C 0.134 3.866 12 C -0.487 4.487 13 H 0.099 0.901 14 C -0.142 4.142 15 N -0.421 5.421 16 Si 0.738 3.262 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.306 4.306 21 C -0.037 4.037 22 N -0.270 5.270 23 C -0.070 4.070 24 C -0.130 4.130 25 C -0.146 4.146 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.094 4.094 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.243 0.757 35 H 0.148 0.852 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.859 14.657 -0.047 15.785 hybrid contribution -0.784 -1.946 0.847 2.262 sum -6.643 12.711 0.800 14.365 Atomic orbital electron populations 1.23853 0.95733 1.01846 1.00950 1.23164 0.96347 0.98724 1.00006 1.20702 0.96927 0.96110 0.97694 1.20321 0.95421 0.91826 1.01102 0.88466 1.20356 0.88577 0.82858 0.79263 1.90775 1.24292 1.80192 1.38822 1.43606 1.13842 1.07576 1.65389 1.18231 0.87828 0.86692 0.96238 1.21633 1.03480 0.90464 1.10873 1.17580 0.89802 0.92675 0.86495 1.19591 0.93413 0.97284 1.38392 0.90063 1.25936 0.95615 0.99548 0.93103 1.69745 1.01455 1.38315 1.32583 0.86201 0.79150 0.81014 0.79806 1.19316 1.20176 1.18501 1.21932 1.00425 0.97305 1.10918 1.21764 0.95614 0.89709 0.96653 1.67216 1.00092 1.36707 1.22968 1.19348 0.98873 0.94177 0.94632 1.21012 1.00172 0.94748 0.97107 1.21022 0.98706 0.96252 0.98655 1.21113 0.99284 0.99761 0.93846 1.21135 1.00082 0.94907 0.98211 1.21068 0.94852 0.94692 0.98774 0.88691 0.88209 0.86536 0.90238 0.90124 0.75730 0.85179 0.90847 0.87997 0.85934 0.86232 0.86326 0.86468 0.86238 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 14.32 29.02 0.42 -1.53 16 2 C -0.16 -1.99 8.66 -36.02 -0.31 -2.30 16 3 C -0.08 -0.91 4.85 -27.88 -0.14 -1.05 16 4 C -0.06 -0.88 2.36 -92.92 -0.22 -1.10 16 5 H 0.10 1.14 7.88 -51.93 -0.41 0.73 16 6 C 0.51 9.37 6.54 -10.98 -0.07 9.29 16 7 O -0.47 -10.54 12.83 5.57 0.07 -10.47 16 8 N -0.66 -12.75 4.56 -11.49 -0.05 -12.80 16 9 C 0.33 8.05 7.42 -154.71 -1.15 6.90 16 10 C -0.24 -6.01 8.60 -38.48 -0.33 -6.35 16 11 C 0.14 3.74 5.60 -106.55 -0.60 3.14 16 12 C -0.46 -11.65 9.13 -37.65 -0.34 -11.99 16 13 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 14 C 0.08 1.82 5.30 -17.34 -0.09 1.73 16 15 N -0.79 -19.34 10.77 55.55 0.60 -18.74 16 16 Si 0.91 17.88 29.57 -169.99 -5.03 12.85 16 17 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 18 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 C -0.28 -6.92 9.90 -38.71 -0.38 -7.30 16 21 C 0.12 2.81 11.15 -17.68 -0.20 2.62 16 22 N -0.55 -13.98 7.85 -12.52 -0.10 -14.08 16 23 C -0.07 -0.97 4.62 -104.62 -0.48 -1.45 16 24 C -0.11 -1.38 9.67 -39.58 -0.38 -1.76 16 25 C -0.13 -1.45 10.05 -39.59 -0.40 -1.84 16 26 C -0.12 -1.38 10.05 -39.59 -0.40 -1.78 16 27 C -0.13 -1.57 10.05 -39.59 -0.40 -1.97 16 28 C -0.08 -1.08 7.92 -39.58 -0.31 -1.40 16 29 H 0.09 0.84 7.85 -52.48 -0.41 0.42 16 30 H 0.10 0.99 8.06 -52.49 -0.42 0.57 16 31 H 0.12 1.65 6.21 -52.49 -0.33 1.32 16 32 H 0.08 0.79 7.80 -51.93 -0.40 0.39 16 33 H 0.08 1.03 7.57 -51.93 -0.39 0.63 16 34 H 0.41 6.67 7.31 -40.82 -0.30 6.37 16 35 H 0.13 3.25 6.18 -52.49 -0.32 2.93 16 36 H 0.28 6.18 8.29 -40.82 -0.34 5.84 16 37 H 0.10 2.30 8.06 -52.48 -0.42 1.87 16 38 H 0.12 2.59 8.06 -52.48 -0.42 2.16 16 39 H 0.12 1.23 7.95 -52.49 -0.42 0.81 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 1.90 7.01 -52.49 -0.37 1.53 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -30.75 363.34 -10.26 -41.01 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -5.44 Total: 14.87 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -5.79 Total: -18.13 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.45 Total: -45.62 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.07 Total: -10.47 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.75 -10.26 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548287301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.660 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds