Wall clock time and date at job start Tue Mar 31 2020 14:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50702 * 120.00430 * 2 1 4 4 C 1.53004 * 109.47084 * 126.31394 * 3 2 1 5 5 H 1.09004 * 109.47299 * 305.18010 * 4 3 2 6 6 C 1.50696 * 109.47150 * 65.18255 * 4 3 2 7 7 O 1.21270 * 120.00184 * 97.23339 * 6 4 3 8 8 N 1.34784 * 119.99727 * 277.23822 * 6 4 3 9 9 C 1.39467 * 119.99671 * 185.33166 * 8 6 4 10 10 C 1.38600 * 119.57855 * 174.68966 * 9 8 6 11 11 C 1.40810 * 118.79370 * 179.78323 * 10 9 8 12 12 C 1.41546 * 120.99102 * 180.25627 * 11 10 9 13 13 H 1.07999 * 119.99644 * 206.66831 * 12 11 10 14 14 C 1.40030 * 120.00273 * 26.66781 * 12 11 10 15 15 N 1.30741 * 119.99962 * 10.67735 * 14 12 11 16 16 Si 1.86800 * 119.99973 * 190.67106 * 14 12 11 17 17 H 1.48497 * 109.46992 * 94.99271 * 16 14 12 18 18 H 1.48505 * 109.47168 * 214.98853 * 16 14 12 19 19 H 1.48494 * 109.47323 * 334.99084 * 16 14 12 20 20 C 1.41169 * 118.00845 * 0.48282 * 11 10 9 21 21 C 1.37588 * 119.01455 * 359.75068 * 20 11 10 22 22 N 1.32081 * 121.10964 * 0.02562 * 21 20 11 23 23 C 1.50702 * 109.46883 * 185.18213 * 4 3 2 24 24 C 1.38236 * 120.00156 * 120.00262 * 23 4 3 25 25 C 1.38231 * 119.99961 * 180.02562 * 24 23 4 26 26 C 1.38235 * 120.00098 * 359.94809 * 25 24 23 27 27 C 1.38231 * 119.99905 * 0.02562 * 26 25 24 28 28 C 1.38230 * 120.00404 * 0.07057 * 27 26 25 29 29 H 1.08006 * 119.99723 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.00350 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00015 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46496 * 6.31853 * 3 2 1 33 33 H 1.08995 * 109.47420 * 246.31537 * 3 2 1 34 34 H 0.97001 * 120.00032 * 5.33718 * 8 6 4 35 35 H 1.08001 * 120.60135 * 359.97438 * 10 9 8 36 36 H 0.96998 * 120.00310 * 180.02562 * 15 14 12 37 37 H 1.08003 * 120.48842 * 179.78158 * 20 11 10 38 38 H 1.08004 * 119.44312 * 180.02562 * 21 20 11 39 39 H 1.08002 * 119.99803 * 359.97438 * 24 23 4 40 40 H 1.08000 * 119.99866 * 179.97438 * 25 24 23 41 41 H 1.08002 * 119.99998 * 179.72305 * 26 25 24 42 42 H 1.08002 * 119.99767 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.00733 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0584 1.3195 1.1624 5 1 2.5306 1.1195 2.0949 6 6 4.1056 0.2589 0.9405 7 8 5.1751 0.5556 0.4517 8 7 3.8536 -1.0195 1.2852 9 6 4.8595 -1.9802 1.1840 10 6 4.6257 -3.2667 1.6438 11 6 5.6512 -4.2247 1.5292 12 6 5.4609 -5.5534 1.9786 13 1 6.3091 -6.1445 2.2909 14 6 4.1729 -6.1014 2.0183 15 7 3.1771 -5.4725 1.4507 16 14 3.8775 -7.7312 2.8820 17 1 3.4293 -7.4790 4.2751 18 1 2.8305 -8.4938 2.1557 19 1 5.1377 -8.5164 2.9020 20 6 6.8765 -3.8192 0.9572 21 6 7.0168 -2.5176 0.5337 22 7 6.0282 -1.6502 0.6549 23 6 3.7207 2.6710 1.2399 24 6 3.5956 3.4374 2.3835 25 6 4.2027 4.6773 2.4544 26 6 4.9357 5.1503 1.3820 27 6 5.0611 4.3837 0.2387 28 6 4.4525 3.1446 0.1670 29 1 -0.5400 0.9354 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3606 2.1304 0.1131 33 1 2.6027 1.4133 -0.9410 34 1 2.9726 -1.2713 1.6036 35 1 3.6731 -3.5303 2.0792 36 1 2.2848 -5.8518 1.4785 37 1 7.6914 -4.5203 0.8532 38 1 7.9511 -2.2000 0.0947 39 1 3.0230 3.0678 3.2213 40 1 4.1047 5.2762 3.3477 41 1 5.4062 6.1209 1.4357 42 1 5.6335 4.7534 -0.5993 43 1 4.5501 2.5458 -0.7265 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548287301.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:54 Heat of formation + Delta-G solvation = 28.030349 kcal Electronic energy + Delta-G solvation = -26110.917799 eV Core-core repulsion = 22506.640523 eV Total energy + Delta-G solvation = -3604.277276 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.66178 -40.29609 -39.21097 -36.62359 -36.13650 -35.42598 -33.40506 -32.44995 -31.73746 -30.68176 -29.40640 -27.91523 -25.79337 -23.94328 -23.79269 -23.42526 -22.18197 -21.02619 -20.73037 -19.43332 -18.34334 -17.78380 -17.40039 -17.02715 -16.71977 -16.12152 -16.07517 -15.88015 -15.58626 -15.46694 -15.15789 -14.70139 -14.53259 -14.35483 -14.26990 -14.07395 -13.73490 -13.50098 -13.19513 -12.91273 -12.89569 -12.73433 -12.69097 -12.19074 -12.10866 -11.89131 -11.86703 -11.68131 -11.45149 -11.17728 -10.87951 -10.31739 -9.93211 -9.76610 -9.64538 -9.52720 -8.87549 -8.60007 -6.58711 0.42581 0.57186 0.73044 0.98982 1.33458 1.40724 1.53238 1.54754 1.89400 2.15461 2.20074 2.81513 2.95707 3.50721 3.62360 3.72734 3.99261 4.02963 4.15805 4.22682 4.25477 4.30282 4.34560 4.38478 4.67339 4.68351 4.73049 4.83305 4.83975 4.91175 4.97864 5.07325 5.08573 5.12720 5.21224 5.22890 5.46892 5.59509 5.63709 5.66766 5.72440 5.73851 5.84357 5.91146 6.12806 6.16482 6.46875 6.58909 6.78474 6.83138 7.31145 7.82068 8.28502 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.003285 C = 0.002944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.513697 B = 8520.790792 C = 9507.799315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.189 4.189 3 C -0.066 4.066 4 C -0.050 4.050 5 H 0.121 0.879 6 C 0.503 3.497 7 O -0.513 6.513 8 N -0.651 5.651 9 C 0.332 3.668 10 C -0.256 4.256 11 C 0.114 3.886 12 C -0.485 4.485 13 H 0.082 0.918 14 C 0.038 3.962 15 N -0.816 5.816 16 Si 0.989 3.011 17 H -0.260 1.260 18 H -0.267 1.267 19 H -0.260 1.260 20 C -0.297 4.297 21 C 0.111 3.889 22 N -0.575 5.575 23 C -0.089 4.089 24 C -0.118 4.118 25 C -0.129 4.129 26 C -0.122 4.122 27 C -0.137 4.137 28 C -0.098 4.098 29 H 0.119 0.881 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.419 0.581 35 H 0.127 0.873 36 H 0.291 0.709 37 H 0.115 0.885 38 H 0.148 0.852 39 H 0.141 0.859 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.132 0.868 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 14.427 2.028 16.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.207 4.207 3 C -0.104 4.104 4 C -0.072 4.072 5 H 0.139 0.861 6 C 0.289 3.711 7 O -0.385 6.385 8 N -0.299 5.299 9 C 0.107 3.893 10 C -0.282 4.282 11 C 0.106 3.894 12 C -0.516 4.516 13 H 0.100 0.900 14 C -0.179 4.179 15 N -0.442 5.442 16 Si 0.810 3.190 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.184 1.184 20 C -0.320 4.320 21 C -0.043 4.043 22 N -0.295 5.295 23 C -0.089 4.089 24 C -0.136 4.136 25 C -0.147 4.147 26 C -0.140 4.140 27 C -0.155 4.155 28 C -0.117 4.117 29 H 0.137 0.863 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.257 0.743 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.165 0.835 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.163 0.837 42 H 0.150 0.850 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.617 15.586 1.327 17.399 hybrid contribution -0.276 -2.161 0.372 2.210 sum -7.893 13.425 1.699 15.666 Atomic orbital electron populations 1.24064 0.94961 1.03190 0.97724 1.22988 0.97005 0.97705 1.03014 1.20639 0.96681 0.96924 0.96127 1.20297 0.94102 0.89901 1.02869 0.86120 1.21303 0.89112 0.83010 0.77642 1.90746 1.26477 1.80780 1.40494 1.43671 1.13503 1.07475 1.65201 1.18495 0.88324 0.87431 0.95092 1.21610 1.03354 0.91020 1.12202 1.18008 0.90762 0.93529 0.87088 1.19868 0.94631 0.97443 1.39618 0.89963 1.26803 0.94715 1.03192 0.93170 1.69784 1.02148 1.39895 1.32382 0.85076 0.79087 0.76174 0.78698 1.18469 1.19152 1.18360 1.22107 1.00596 0.97914 1.11429 1.22204 0.96367 0.89579 0.96134 1.67348 1.00861 1.37298 1.23963 1.19449 0.99732 0.94390 0.95347 1.21317 1.00314 0.95077 0.96924 1.21432 0.97616 0.96055 0.99576 1.21483 0.98757 1.00615 0.93145 1.21373 1.00135 0.94552 0.99479 1.21054 0.96423 0.95585 0.98599 0.86280 0.87808 0.89250 0.87505 0.91848 0.74256 0.85582 0.89782 0.86683 0.83472 0.84121 0.83393 0.83708 0.85045 0.87772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 14.32 67.79 0.97 -2.06 16 2 C -0.19 -4.46 8.66 25.65 0.22 -4.24 16 3 C -0.07 -1.53 4.85 29.85 0.14 -1.39 16 4 C -0.05 -1.34 2.36 -12.29 -0.03 -1.37 16 5 H 0.12 2.62 7.88 -2.38 -0.02 2.60 16 6 C 0.50 19.14 6.54 87.65 0.57 19.71 16 7 O -0.51 -23.89 12.83 -3.00 -0.04 -23.93 16 8 N -0.65 -26.04 4.56 -308.66 -1.41 -27.45 16 9 C 0.33 16.57 7.42 132.76 0.98 17.56 16 10 C -0.26 -13.37 8.60 22.99 0.20 -13.17 16 11 C 0.11 6.18 5.60 -21.11 -0.12 6.06 16 12 C -0.48 -25.29 9.13 23.52 0.21 -25.07 16 13 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 14 C 0.04 1.80 5.30 85.29 0.45 2.25 16 15 N -0.82 -39.95 10.77 21.84 0.24 -39.71 16 16 Si 0.99 36.08 29.57 68.60 2.03 38.11 16 17 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 18 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 19 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 20 C -0.30 -15.00 9.90 22.84 0.23 -14.77 16 21 C 0.11 5.48 11.15 84.50 0.94 6.43 16 22 N -0.57 -30.17 7.85 -193.54 -1.52 -31.69 16 23 C -0.09 -2.40 4.62 -19.86 -0.09 -2.49 16 24 C -0.12 -2.65 9.67 22.27 0.22 -2.43 16 25 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 26 C -0.12 -2.49 10.05 22.27 0.22 -2.26 16 27 C -0.14 -3.36 10.05 22.27 0.22 -3.14 16 28 C -0.10 -2.86 7.92 22.27 0.18 -2.69 16 29 H 0.12 1.67 7.85 -2.91 -0.02 1.65 16 30 H 0.10 1.86 8.06 -2.91 -0.02 1.83 16 31 H 0.09 2.61 6.21 -2.91 -0.02 2.59 16 32 H 0.11 1.89 7.80 -2.38 -0.02 1.87 16 33 H 0.06 1.67 7.57 -2.39 -0.02 1.65 16 34 H 0.42 14.15 7.31 -92.71 -0.68 13.47 16 35 H 0.13 6.53 6.18 -2.91 -0.02 6.51 16 36 H 0.29 12.72 8.29 -92.71 -0.77 11.95 16 37 H 0.12 5.32 8.06 -2.91 -0.02 5.29 16 38 H 0.15 6.30 8.06 -2.91 -0.02 6.28 16 39 H 0.14 2.45 7.95 -2.91 -0.02 2.43 16 40 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.10 3.39 7.01 -2.91 -0.02 3.37 16 Total: -1.00 -68.75 363.34 5.40 -63.35 By element: Atomic # 1 Polarization: 46.37 SS G_CDS: 0.35 Total: 46.72 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 5.75 Total: -25.40 kcal Atomic # 7 Polarization: -96.16 SS G_CDS: -2.69 Total: -98.85 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.04 Total: -23.93 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Total: -68.75 5.40 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548287301.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.380 kcal (2) G-P(sol) polarization free energy of solvation -68.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds