Wall clock time and date at job start Tue Mar 31 2020 13:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32615 * 119.99880 * 2 1 4 4 C 1.47756 * 119.99675 * 179.97438 * 3 2 1 5 5 C 1.39603 * 120.06465 * 179.97438 * 4 3 2 6 6 C 1.37819 * 119.92335 * 180.02562 * 5 4 3 7 7 C 1.39010 * 120.07197 * 0.02562 * 6 5 4 8 8 N 1.39807 * 119.92591 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99630 * 143.45620 * 8 7 6 10 10 O 1.21591 * 119.99990 * 4.64663 * 9 8 7 11 11 N 1.34772 * 119.99885 * 184.64303 * 9 8 7 12 12 C 1.39222 * 120.00047 * 184.37472 * 11 9 8 13 13 C 1.39484 * 119.83435 * 323.36660 * 12 11 9 14 14 C 1.36373 * 120.17371 * 179.75792 * 13 12 11 15 15 C 1.40872 * 119.82206 * 0.54126 * 14 13 12 16 16 C 1.41159 * 120.15991 * 179.69034 * 15 14 13 17 17 H 1.08000 * 119.99577 * 208.62404 * 16 15 14 18 18 C 1.39886 * 120.00034 * 28.63193 * 16 15 14 19 19 N 1.30889 * 120.00213 * 16.04910 * 18 16 15 20 20 Si 1.86798 * 120.00186 * 196.04939 * 18 16 15 21 21 H 1.48502 * 109.46874 * 59.99768 * 20 18 16 22 22 H 1.48497 * 109.47499 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47196 * 300.00115 * 20 18 16 24 24 C 1.40867 * 119.67609 * 359.71957 * 15 14 13 25 25 C 1.36367 * 119.82940 * 359.97438 * 24 15 14 26 26 C 1.39002 * 120.14065 * 0.25238 * 7 6 5 27 27 C 1.37817 * 120.07378 * 359.48340 * 26 7 6 28 28 H 1.09005 * 109.47683 * 300.00453 * 1 2 3 29 29 H 1.09004 * 109.47516 * 60.00152 * 1 2 3 30 30 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99920 * 179.97438 * 2 1 3 32 32 H 1.07997 * 119.99774 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.04099 * 0.04985 * 5 4 3 34 34 H 1.07996 * 119.96133 * 179.97438 * 6 5 4 35 35 H 0.96993 * 119.99594 * 323.46018 * 8 7 6 36 36 H 0.97000 * 119.99783 * 4.64619 * 11 9 8 37 37 H 1.08003 * 119.91627 * 0.02562 * 13 12 11 38 38 H 1.07995 * 120.08867 * 180.23527 * 14 13 12 39 39 H 0.97000 * 120.00036 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.08940 * 179.97438 * 24 15 14 41 41 H 1.08002 * 119.91783 * 179.97438 * 25 24 15 42 42 H 1.07996 * 119.96047 * 179.74823 * 26 7 6 43 43 H 1.08002 * 120.03543 * 180.27425 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1485 0.0000 4 6 3.6476 1.1484 0.0006 5 6 4.3470 2.3566 0.0000 6 6 5.7252 2.3532 0.0000 7 6 6.4187 1.1484 0.0000 8 7 7.8168 1.1485 -0.0005 9 6 8.4909 0.2109 0.6945 10 8 7.8861 -0.6843 1.2523 11 7 9.8353 0.2657 0.7710 12 6 10.5381 -0.7515 1.4111 13 6 10.0028 -1.3552 2.5488 14 6 10.6830 -2.3556 3.1784 15 6 11.9347 -2.7711 2.6833 16 6 12.6479 -3.8014 3.3332 17 1 13.7267 -3.8233 3.2873 18 6 11.9574 -4.7940 4.0365 19 7 10.6738 -4.9608 3.8425 20 14 12.8672 -5.8817 5.2525 21 1 13.4673 -5.0388 6.3177 22 1 11.9165 -6.8460 5.8618 23 1 13.9412 -6.6244 4.5451 24 6 12.4714 -2.1529 1.5369 25 6 11.7766 -1.1582 0.9145 26 6 5.7252 -0.0562 -0.0053 27 6 4.3470 -0.0597 0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.0469 -0.9353 0.0004 32 1 1.6300 2.0837 -0.0004 33 1 3.8088 3.2929 0.0000 34 1 6.2669 3.2875 -0.0008 35 1 8.3015 1.8233 -0.5010 36 1 10.3130 1.0158 0.3836 37 1 9.0451 -1.0325 2.9298 38 1 10.2655 -2.8246 4.0570 39 1 10.1949 -5.6489 4.3304 40 1 13.4307 -2.4659 1.1519 41 1 12.1869 -0.6829 0.0358 42 1 6.2669 -0.9904 -0.0094 43 1 3.8088 -0.9960 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000558245250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:52 Heat of formation + Delta-G solvation = 35.798129 kcal Electronic energy + Delta-G solvation = -24893.401595 eV Core-core repulsion = 21289.461155 eV Total energy + Delta-G solvation = -3603.940440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.54863 -39.00168 -37.45325 -35.66958 -34.45337 -33.97605 -32.90442 -30.95630 -30.17846 -29.48559 -28.80609 -26.39546 -24.83622 -23.10653 -22.57307 -21.41784 -20.95690 -20.02352 -19.44830 -18.09130 -17.73552 -17.27395 -16.38068 -15.82992 -15.37006 -15.13934 -14.64976 -14.33013 -14.16687 -13.92513 -13.62023 -13.49629 -13.34720 -13.10816 -12.82909 -12.76881 -12.66161 -12.09857 -11.85305 -11.77125 -11.53412 -11.38181 -11.14679 -11.06095 -10.93284 -10.61954 -10.48728 -10.00317 -9.90657 -9.56327 -9.37574 -9.17084 -8.90836 -8.71456 -7.68592 -7.52606 -6.99203 -6.71162 -4.29346 0.86747 1.44273 2.37189 2.64246 2.92670 3.06643 3.09061 3.11270 3.17130 3.57177 3.95464 3.97079 4.49287 4.59328 4.66470 4.75315 4.95749 4.99999 5.14183 5.34962 5.37135 5.43701 5.51868 5.62139 5.69037 5.74495 5.99524 6.12937 6.24111 6.28928 6.33874 6.40057 6.49383 6.59455 6.77115 6.79261 6.83967 7.04525 7.10801 7.11944 7.26500 7.31125 7.62153 7.80728 7.96258 8.06486 8.26518 8.38106 8.63671 8.87544 8.89719 9.03798 10.23375 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.002393 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.587079 B =11700.036101 C =13140.645151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.159 4.159 3 C -0.117 4.117 4 C -0.082 4.082 5 C -0.092 4.092 6 C -0.151 4.151 7 C 0.175 3.825 8 N -0.693 5.693 9 C 0.691 3.309 10 O -0.556 6.556 11 N -0.660 5.660 12 C 0.007 3.993 13 C -0.084 4.084 14 C -0.152 4.152 15 C 0.108 3.892 16 C -0.463 4.463 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.791 5.791 20 Si 0.909 3.091 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.213 4.213 25 C -0.104 4.104 26 C -0.115 4.115 27 C -0.095 4.095 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.114 0.886 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.124 0.876 35 H 0.403 0.597 36 H 0.392 0.608 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.282 0.718 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.900 12.995 -8.035 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.177 4.177 3 C -0.135 4.135 4 C -0.083 4.083 5 C -0.111 4.111 6 C -0.172 4.172 7 C 0.079 3.921 8 N -0.341 5.341 9 C 0.392 3.608 10 O -0.431 6.431 11 N -0.306 5.306 12 C -0.085 4.085 13 C -0.104 4.104 14 C -0.172 4.172 15 C 0.106 3.894 16 C -0.493 4.493 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.416 5.416 20 Si 0.733 3.267 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.191 1.191 24 C -0.233 4.233 25 C -0.124 4.124 26 C -0.136 4.136 27 C -0.113 4.113 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.238 0.762 36 H 0.225 0.775 37 H 0.124 0.876 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.108 0.892 42 H 0.161 0.839 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.569 11.982 -7.437 19.570 hybrid contribution 0.889 0.162 0.049 0.905 sum -12.680 12.144 -7.387 19.048 Atomic orbital electron populations 1.20831 0.92913 1.02445 1.01869 1.23374 0.96095 0.98284 0.99918 1.21578 0.91910 0.98206 1.01788 1.18985 0.92966 0.93210 1.03123 1.20930 0.93159 0.97200 0.99797 1.20794 0.94407 0.96371 1.05605 1.17586 0.81717 0.93828 0.98964 1.42677 1.04627 1.33978 1.52815 1.16039 0.82455 0.82170 0.80134 1.90951 1.67133 1.35303 1.49753 1.42047 1.03900 1.24994 1.59621 1.16957 0.95175 0.98329 0.98082 1.20545 0.98778 0.97409 0.93682 1.20922 0.97215 0.97648 1.01450 1.17672 0.91725 0.90604 0.89436 1.19478 0.94677 1.07236 1.27894 0.90435 1.25915 0.94838 0.97644 0.95964 1.69849 1.09085 1.28532 1.34173 0.86368 0.79999 0.79486 0.80842 1.18858 1.20368 1.19059 1.20565 1.01514 1.02269 0.98965 1.20049 0.95031 0.98603 0.98735 1.21335 0.93908 0.98423 0.99892 1.21191 0.93606 0.97452 0.99074 0.91632 0.91675 0.91968 0.86854 0.86749 0.85826 0.85829 0.76235 0.77496 0.87577 0.86634 0.90752 0.88566 0.89218 0.83902 0.85696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.18 36.00 0.37 -0.49 16 2 C -0.16 -1.44 9.68 -36.21 -0.35 -1.79 16 3 C -0.12 -1.13 9.55 -37.59 -0.36 -1.49 16 4 C -0.08 -0.96 5.87 -104.99 -0.62 -1.57 16 5 C -0.09 -0.98 9.78 -39.23 -0.38 -1.37 16 6 C -0.15 -1.69 9.95 -39.45 -0.39 -2.09 16 7 C 0.17 2.42 6.27 -83.65 -0.52 1.90 16 8 N -0.69 -9.27 5.33 -14.19 -0.08 -9.35 16 9 C 0.69 12.44 8.22 -86.92 -0.71 11.72 16 10 O -0.56 -12.46 11.37 5.29 0.06 -12.40 16 11 N -0.66 -11.47 5.30 -14.10 -0.07 -11.55 16 12 C 0.01 0.15 6.28 -83.57 -0.52 -0.37 16 13 C -0.08 -2.10 8.60 -39.79 -0.34 -2.44 16 14 C -0.15 -4.09 8.61 -39.26 -0.34 -4.43 16 15 C 0.11 2.90 5.53 -106.80 -0.59 2.31 16 16 C -0.46 -12.31 9.02 -37.86 -0.34 -12.65 16 17 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 18 C 0.07 1.90 5.14 -17.34 -0.09 1.81 16 19 N -0.79 -21.10 11.13 55.54 0.62 -20.49 16 20 Si 0.91 18.88 29.59 -169.99 -5.03 13.85 16 21 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 25 C -0.10 -2.25 9.90 -39.79 -0.39 -2.65 16 26 C -0.12 -1.76 8.66 -39.45 -0.34 -2.10 16 27 C -0.09 -1.25 9.39 -39.23 -0.37 -1.62 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.11 1.05 6.03 -52.49 -0.32 0.73 16 32 H 0.11 0.91 8.05 -52.49 -0.42 0.48 16 33 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.40 3.78 8.85 -40.82 -0.36 3.42 16 36 H 0.39 5.11 8.85 -40.82 -0.36 4.75 16 37 H 0.11 2.70 6.32 -52.48 -0.33 2.36 16 38 H 0.12 3.23 6.40 -52.49 -0.34 2.89 16 39 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.14 2.54 6.34 -52.49 -0.33 2.21 16 43 H 0.13 1.46 6.16 -52.49 -0.32 1.14 16 LS Contribution 364.26 15.07 5.49 5.49 Total: -1.00 -31.44 364.26 -10.99 -42.43 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -5.29 Total: 14.85 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: -6.69 Total: -22.84 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: 0.47 Total: -41.38 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: 0.06 Total: -12.40 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.44 -10.99 -42.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558245250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.233 kcal (2) G-P(sol) polarization free energy of solvation -31.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds