Wall clock time and date at job start Tue Mar 31 2020 13:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32615 * 119.99880 * 2 1 4 4 C 1.47756 * 119.99675 * 179.97438 * 3 2 1 5 5 C 1.39603 * 120.06465 * 179.97438 * 4 3 2 6 6 C 1.37819 * 119.92335 * 180.02562 * 5 4 3 7 7 C 1.39010 * 120.07197 * 0.02562 * 6 5 4 8 8 N 1.39807 * 119.92591 * 179.97438 * 7 6 5 9 9 C 1.34775 * 119.99630 * 143.45620 * 8 7 6 10 10 O 1.21591 * 119.99990 * 4.64663 * 9 8 7 11 11 N 1.34772 * 119.99885 * 184.64303 * 9 8 7 12 12 C 1.39222 * 120.00047 * 184.37472 * 11 9 8 13 13 C 1.39484 * 119.83435 * 323.36660 * 12 11 9 14 14 C 1.36373 * 120.17371 * 179.75792 * 13 12 11 15 15 C 1.40872 * 119.82206 * 0.54126 * 14 13 12 16 16 C 1.41159 * 120.15991 * 179.69034 * 15 14 13 17 17 H 1.08000 * 119.99577 * 208.62404 * 16 15 14 18 18 C 1.39886 * 120.00034 * 28.63193 * 16 15 14 19 19 N 1.30889 * 120.00213 * 16.04910 * 18 16 15 20 20 Si 1.86798 * 120.00186 * 196.04939 * 18 16 15 21 21 H 1.48502 * 109.46874 * 59.99768 * 20 18 16 22 22 H 1.48497 * 109.47499 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47196 * 300.00115 * 20 18 16 24 24 C 1.40867 * 119.67609 * 359.71957 * 15 14 13 25 25 C 1.36367 * 119.82940 * 359.97438 * 24 15 14 26 26 C 1.39002 * 120.14065 * 0.25238 * 7 6 5 27 27 C 1.37817 * 120.07378 * 359.48340 * 26 7 6 28 28 H 1.09005 * 109.47683 * 300.00453 * 1 2 3 29 29 H 1.09004 * 109.47516 * 60.00152 * 1 2 3 30 30 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 31 31 H 1.08002 * 119.99920 * 179.97438 * 2 1 3 32 32 H 1.07997 * 119.99774 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.04099 * 0.04985 * 5 4 3 34 34 H 1.07996 * 119.96133 * 179.97438 * 6 5 4 35 35 H 0.96993 * 119.99594 * 323.46018 * 8 7 6 36 36 H 0.97000 * 119.99783 * 4.64619 * 11 9 8 37 37 H 1.08003 * 119.91627 * 0.02562 * 13 12 11 38 38 H 1.07995 * 120.08867 * 180.23527 * 14 13 12 39 39 H 0.97000 * 120.00036 * 180.02562 * 19 18 16 40 40 H 1.08000 * 120.08940 * 179.97438 * 24 15 14 41 41 H 1.08002 * 119.91783 * 179.97438 * 25 24 15 42 42 H 1.07996 * 119.96047 * 179.74823 * 26 7 6 43 43 H 1.08002 * 120.03543 * 180.27425 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1485 0.0000 4 6 3.6476 1.1484 0.0006 5 6 4.3470 2.3566 0.0000 6 6 5.7252 2.3532 0.0000 7 6 6.4187 1.1484 0.0000 8 7 7.8168 1.1485 -0.0005 9 6 8.4909 0.2109 0.6945 10 8 7.8861 -0.6843 1.2523 11 7 9.8353 0.2657 0.7710 12 6 10.5381 -0.7515 1.4111 13 6 10.0028 -1.3552 2.5488 14 6 10.6830 -2.3556 3.1784 15 6 11.9347 -2.7711 2.6833 16 6 12.6479 -3.8014 3.3332 17 1 13.7267 -3.8233 3.2873 18 6 11.9574 -4.7940 4.0365 19 7 10.6738 -4.9608 3.8425 20 14 12.8672 -5.8817 5.2525 21 1 13.4673 -5.0388 6.3177 22 1 11.9165 -6.8460 5.8618 23 1 13.9412 -6.6244 4.5451 24 6 12.4714 -2.1529 1.5369 25 6 11.7766 -1.1582 0.9145 26 6 5.7252 -0.0562 -0.0053 27 6 4.3470 -0.0597 0.0002 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.0469 -0.9353 0.0004 32 1 1.6300 2.0837 -0.0004 33 1 3.8088 3.2929 0.0000 34 1 6.2669 3.2875 -0.0008 35 1 8.3015 1.8233 -0.5010 36 1 10.3130 1.0158 0.3836 37 1 9.0451 -1.0325 2.9298 38 1 10.2655 -2.8246 4.0570 39 1 10.1949 -5.6489 4.3304 40 1 13.4307 -2.4659 1.1519 41 1 12.1869 -0.6829 0.0358 42 1 6.2669 -0.9904 -0.0094 43 1 3.8088 -0.9960 0.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000558245250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:51 Heat of formation + Delta-G solvation = 18.580499 kcal Electronic energy + Delta-G solvation = -24894.148207 eV Core-core repulsion = 21289.461155 eV Total energy + Delta-G solvation = -3604.687052 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88682 -40.21988 -39.11432 -36.77436 -36.11608 -35.11910 -34.55138 -31.92504 -31.48232 -31.26575 -30.38489 -27.43081 -26.45643 -24.08109 -23.86029 -23.18003 -22.49289 -21.53101 -20.27350 -19.46119 -19.23148 -18.92996 -17.66222 -17.08189 -17.04922 -16.43858 -15.98892 -15.73458 -15.51249 -15.25426 -14.94939 -14.51402 -14.37845 -14.24404 -14.01691 -13.94927 -13.83973 -13.64291 -13.62353 -13.36675 -12.80331 -12.71597 -12.56704 -12.31924 -12.19324 -11.95288 -11.78437 -11.75942 -11.55271 -11.25818 -10.98650 -10.51514 -10.29352 -9.89875 -9.45731 -8.90335 -8.63081 -8.56095 -6.28065 -0.05799 0.47950 0.84323 1.13693 1.37642 1.46462 1.47114 1.51125 1.70950 2.12563 2.21674 2.77036 2.99394 3.25651 3.72315 3.82272 3.89985 4.05759 4.27896 4.38235 4.42534 4.46255 4.48893 4.56827 4.70189 4.82166 4.87148 4.94968 5.05841 5.09918 5.12801 5.15549 5.27184 5.31420 5.37844 5.42133 5.47506 5.55026 5.67041 5.73940 5.78377 5.97805 6.06271 6.09702 6.11576 6.15025 6.35425 6.68094 6.93160 7.00818 7.04857 7.55212 8.36078 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016767 B = 0.002393 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.587079 B =11700.036101 C =13140.645151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.158 4.158 3 C -0.129 4.129 4 C -0.082 4.082 5 C -0.089 4.089 6 C -0.137 4.137 7 C 0.148 3.852 8 N -0.669 5.669 9 C 0.689 3.311 10 O -0.606 6.606 11 N -0.649 5.649 12 C 0.025 3.975 13 C -0.098 4.098 14 C -0.177 4.177 15 C 0.075 3.925 16 C -0.497 4.497 17 H 0.083 0.917 18 C 0.029 3.971 19 N -0.834 5.834 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.255 1.255 24 C -0.219 4.219 25 C -0.097 4.097 26 C -0.142 4.142 27 C -0.112 4.112 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.102 0.898 32 H 0.140 0.860 33 H 0.161 0.839 34 H 0.158 0.842 35 H 0.425 0.575 36 H 0.418 0.582 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.285 0.715 40 H 0.113 0.887 41 H 0.137 0.863 42 H 0.105 0.895 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 15.775 -9.355 22.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.176 4.176 3 C -0.146 4.146 4 C -0.082 4.082 5 C -0.107 4.107 6 C -0.157 4.157 7 C 0.053 3.947 8 N -0.319 5.319 9 C 0.390 3.610 10 O -0.484 6.484 11 N -0.297 5.297 12 C -0.069 4.069 13 C -0.119 4.119 14 C -0.197 4.197 15 C 0.072 3.928 16 C -0.527 4.527 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.460 5.460 20 Si 0.805 3.195 21 H -0.183 1.183 22 H -0.197 1.197 23 H -0.179 1.179 24 C -0.239 4.239 25 C -0.117 4.117 26 C -0.163 4.163 27 C -0.130 4.130 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.120 0.880 32 H 0.157 0.843 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.264 0.736 36 H 0.256 0.744 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.155 0.845 42 H 0.123 0.877 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.014 14.844 -8.817 22.236 hybrid contribution 0.822 -0.561 0.321 1.046 sum -13.192 14.283 -8.496 21.218 Atomic orbital electron populations 1.20869 0.91082 1.03139 1.02840 1.23619 0.97552 0.97900 0.98503 1.21728 0.90767 0.99437 1.02717 1.19313 0.94303 0.92946 1.01679 1.21393 0.93115 0.98146 0.98095 1.21131 0.94810 0.96339 1.03454 1.17788 0.81638 0.94412 1.00831 1.42288 1.04613 1.33117 1.51839 1.16214 0.82426 0.82359 0.79984 1.90945 1.68132 1.37552 1.51775 1.41757 1.03810 1.24863 1.59263 1.16988 0.95243 0.98097 0.96601 1.20553 0.98348 0.97832 0.95142 1.20800 0.98266 0.98973 1.01635 1.18016 0.92070 0.91731 0.90973 1.19771 0.95067 1.08111 1.29732 0.89884 1.26854 0.95512 0.98873 0.97285 1.69946 1.10876 1.29677 1.35529 0.85215 0.78695 0.77441 0.78112 1.18307 1.19749 1.17925 1.20853 1.02300 1.02543 0.98174 1.20414 0.94225 0.97572 0.99488 1.21175 0.94902 0.97855 1.02360 1.21277 0.92989 0.98725 1.00022 0.90745 0.90400 0.91549 0.87961 0.84261 0.82156 0.82405 0.73589 0.74445 0.88925 0.89210 0.90422 0.86933 0.84519 0.87673 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.18 71.23 0.73 -0.71 16 2 C -0.16 -2.67 9.68 24.52 0.24 -2.43 16 3 C -0.13 -2.22 9.55 23.63 0.23 -1.99 16 4 C -0.08 -1.79 5.87 -20.10 -0.12 -1.91 16 5 C -0.09 -1.61 9.78 22.50 0.22 -1.39 16 6 C -0.14 -2.67 9.95 22.36 0.22 -2.45 16 7 C 0.15 4.01 6.27 38.24 0.24 4.25 16 8 N -0.67 -17.05 5.33 -317.07 -1.69 -18.74 16 9 C 0.69 24.79 8.22 179.06 1.47 26.26 16 10 O -0.61 -28.48 11.37 -4.00 -0.05 -28.53 16 11 N -0.65 -21.64 5.30 -316.79 -1.68 -23.32 16 12 C 0.02 1.08 6.28 38.57 0.24 1.32 16 13 C -0.10 -5.14 8.60 22.13 0.19 -4.95 16 14 C -0.18 -10.07 8.61 22.48 0.19 -9.87 16 15 C 0.07 4.15 5.53 -21.27 -0.12 4.03 16 16 C -0.50 -27.36 9.02 23.39 0.21 -27.15 16 17 H 0.08 4.29 7.90 -2.91 -0.02 4.27 16 18 C 0.03 1.51 5.14 85.23 0.44 1.95 16 19 N -0.83 -46.92 11.13 21.82 0.24 -46.68 16 20 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 24 C -0.22 -10.51 9.74 22.48 0.22 -10.29 16 25 C -0.10 -4.04 9.90 22.14 0.22 -3.82 16 26 C -0.14 -4.59 8.66 22.35 0.19 -4.39 16 27 C -0.11 -3.05 9.39 22.50 0.21 -2.84 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 1.92 6.03 -2.91 -0.02 1.90 16 32 H 0.14 1.69 8.05 -2.91 -0.02 1.67 16 33 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 34 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.43 6.76 8.85 -92.71 -0.82 5.94 16 36 H 0.42 9.59 8.85 -92.71 -0.82 8.77 16 37 H 0.09 5.02 6.32 -2.91 -0.02 5.00 16 38 H 0.09 5.45 6.40 -2.91 -0.02 5.43 16 39 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 40 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 41 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 42 H 0.11 4.14 6.34 -2.91 -0.02 4.12 16 43 H 0.13 3.20 6.16 -2.91 -0.02 3.18 16 Total: -1.00 -74.41 364.26 3.50 -70.91 By element: Atomic # 1 Polarization: 41.61 SS G_CDS: -0.58 Total: 41.04 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 5.22 Total: -36.39 kcal Atomic # 7 Polarization: -85.61 SS G_CDS: -3.13 Total: -88.74 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.05 Total: -28.53 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -74.41 3.50 -70.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000558245250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.487 kcal (2) G-P(sol) polarization free energy of solvation -74.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds