Wall clock time and date at job start Tue Mar 31 2020 13:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46795 * 2 1 4 4 C 1.50699 * 109.47372 * 120.00402 * 2 1 3 5 5 N 1.30942 * 122.90185 * 305.18792 * 4 2 1 6 6 C 1.29430 * 117.36355 * 180.35039 * 5 4 2 7 7 S 1.70952 * 110.38876 * 359.70641 * 6 5 4 8 8 C 1.35665 * 122.90502 * 124.99636 * 4 2 1 9 9 C 1.46681 * 126.12848 * 359.95898 * 8 4 2 10 10 O 1.21693 * 119.99421 * 94.96171 * 9 8 4 11 11 N 1.34773 * 119.99905 * 274.95865 * 9 8 4 12 12 C 1.46926 * 120.63486 * 354.90076 * 11 9 8 13 13 C 1.53190 * 108.89327 * 233.51530 * 12 11 9 14 14 C 1.53075 * 109.29415 * 305.57863 * 13 12 11 15 15 C 1.53006 * 109.44943 * 181.24255 * 14 13 12 16 16 C 1.50699 * 109.46897 * 64.78692 * 15 14 13 17 17 H 1.07996 * 120.00373 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99786 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99728 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00092 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47056 * 89.99765 * 20 18 16 22 22 H 1.48492 * 109.47361 * 210.00154 * 20 18 16 23 23 H 1.48502 * 109.47237 * 330.00347 * 20 18 16 24 24 C 1.53041 * 109.65844 * 61.15454 * 14 13 12 25 25 C 1.46929 * 120.62787 * 174.87895 * 11 9 8 26 26 H 1.08997 * 109.47807 * 59.99474 * 1 2 3 27 27 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47090 * 299.99411 * 1 2 3 29 29 H 1.09001 * 109.46812 * 240.00116 * 2 1 3 30 30 H 1.09007 * 109.46791 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47640 * 299.99879 * 3 2 1 32 32 H 1.09001 * 109.47345 * 60.00443 * 3 2 1 33 33 H 1.07994 * 124.81057 * 179.72611 * 6 5 4 34 34 H 1.09000 * 109.58142 * 353.37459 * 12 11 9 35 35 H 1.08996 * 109.58846 * 113.65474 * 12 11 9 36 36 H 1.09003 * 109.49590 * 65.38566 * 13 12 11 37 37 H 1.09000 * 109.49779 * 185.48072 * 13 12 11 38 38 H 1.09000 * 109.34361 * 301.12454 * 14 13 12 39 39 H 1.08998 * 109.46895 * 184.78783 * 15 14 13 40 40 H 1.09000 * 109.46962 * 304.78548 * 15 14 13 41 41 H 0.97000 * 119.99740 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.49166 * 178.75087 * 24 14 13 43 43 H 1.08998 * 109.52681 * 58.66606 * 24 14 13 44 44 H 1.09001 * 109.58714 * 246.20422 * 25 11 9 45 45 H 1.09003 * 109.58958 * 6.47976 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.6722 -0.3733 2.4433 6 6 2.1750 -1.0526 3.4236 7 16 3.2184 -2.2702 2.8311 8 6 2.8940 -1.7571 1.1769 9 6 3.4590 -2.3509 -0.0395 10 8 4.5503 -1.9923 -0.4412 11 7 2.7695 -3.2935 -0.7121 12 6 1.5035 -3.8170 -0.1810 13 6 1.5867 -5.3453 -0.1168 14 6 1.9660 -5.8896 -1.4963 15 6 2.0198 -7.4178 -1.4438 16 6 0.6423 -7.9595 -1.1611 17 1 -0.1886 -7.2817 -1.0322 18 6 0.4424 -9.3206 -1.0681 19 7 1.4541 -10.1460 -1.2256 20 14 -1.2652 -9.9922 -0.7183 21 1 -1.9773 -10.2259 -2.0003 22 1 -1.1509 -11.2725 0.0251 23 1 -2.0251 -9.0118 0.0982 24 6 3.3363 -5.3449 -1.9058 25 6 3.2693 -3.8169 -1.9908 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.9648 -0.8756 4.4680 34 1 1.3341 -3.4178 0.8190 35 1 0.6832 -3.5229 -0.8356 36 1 2.3455 -5.6381 0.6089 37 1 0.6202 -5.7499 0.1834 38 1 1.2184 -5.5776 -2.2256 39 1 2.3719 -7.8020 -2.4012 40 1 2.7024 -7.7304 -0.6536 41 1 1.3135 -11.1035 -1.1605 42 1 3.6135 -5.7516 -2.8784 43 1 4.0804 -5.6357 -1.1643 44 1 2.5932 -3.5249 -2.7945 45 1 4.2638 -3.4157 -2.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563187295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:50 Heat of formation + Delta-G solvation = -15.350891 kcal Electronic energy + Delta-G solvation = -25586.174222 eV Core-core repulsion = 22115.459746 eV Total energy + Delta-G solvation = -3470.714476 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.77302 -39.50383 -37.35879 -35.11209 -34.07618 -32.29352 -31.22427 -30.12794 -28.05346 -27.30955 -26.10419 -24.62247 -23.00436 -22.73566 -22.11249 -20.73049 -19.50312 -18.45657 -17.89253 -17.27914 -16.43068 -16.20048 -15.40375 -14.83445 -14.67100 -14.55656 -14.41399 -14.28669 -13.84431 -13.66606 -13.29157 -13.08358 -13.03507 -12.84698 -12.44163 -12.31631 -12.27899 -11.86738 -11.36893 -11.23981 -11.16856 -11.09057 -11.04513 -10.86934 -10.74767 -10.52239 -10.28769 -10.18862 -9.84651 -9.75733 -9.51562 -9.32030 -9.04739 -9.00396 -8.48699 -8.38519 -6.03376 -4.05610 0.28595 0.88931 1.41444 2.46282 2.66363 3.06571 3.28331 3.35442 3.37176 3.90014 4.41162 4.42044 4.65292 4.72290 4.96348 5.05788 5.12288 5.18502 5.30975 5.32166 5.41852 5.44841 5.48967 5.60097 5.63558 5.67874 5.70471 5.75647 5.89706 5.91610 5.98403 6.06825 6.15272 6.28523 6.31939 6.45034 6.58077 6.88710 6.92672 7.05147 7.34610 7.43688 7.62784 7.76838 7.95976 8.03969 8.38017 9.00810 9.58430 11.07836 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.003364 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.027931 B = 8321.262200 C = 8612.050174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.023 4.023 3 C -0.140 4.140 4 C 0.115 3.885 5 N -0.461 5.461 6 C 0.014 3.986 7 S 0.190 5.810 8 C -0.270 4.270 9 C 0.595 3.405 10 O -0.532 6.532 11 N -0.589 5.589 12 C 0.105 3.895 13 C -0.118 4.118 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.129 4.129 25 C 0.112 3.888 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.204 0.796 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.087 0.913 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 19.947 6.104 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.044 4.044 3 C -0.197 4.197 4 C -0.021 4.021 5 N -0.174 5.174 6 C -0.282 4.282 7 S 0.445 5.555 8 C -0.394 4.394 9 C 0.379 3.621 10 O -0.410 6.410 11 N -0.322 5.322 12 C -0.017 4.017 13 C -0.156 4.156 14 C -0.099 4.099 15 C -0.009 4.009 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.167 4.167 25 C -0.010 4.010 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.221 0.779 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.549 19.583 6.572 20.715 hybrid contribution -1.269 -0.231 -0.283 1.321 sum 0.279 19.352 6.290 20.350 Atomic orbital electron populations 1.21773 0.93183 1.02314 1.02474 1.19818 0.96748 0.96035 0.91827 1.21772 1.01207 0.94382 1.02381 1.20427 0.94589 0.93650 0.93461 1.65899 1.24800 1.28311 0.98392 1.28627 0.98988 0.97043 1.03494 1.84216 1.42755 1.32431 0.96097 1.25448 1.09368 1.05824 0.98777 1.16790 0.84196 0.79319 0.81781 1.90823 1.19756 1.62001 1.68446 1.48099 1.23575 1.37812 1.22674 1.21954 0.84543 0.96465 0.98771 1.21911 1.03429 0.91170 0.99047 1.21208 0.94107 0.99535 0.95090 1.19120 0.97072 0.87480 0.97233 1.21224 0.94464 0.91455 1.48400 0.92613 1.25020 0.96588 0.97296 0.95512 1.69962 1.30355 1.02844 1.50243 0.86651 0.84844 0.78497 0.78344 1.20719 1.21294 1.19902 1.22029 0.99638 0.92791 1.02260 1.21777 1.00451 0.95282 0.83485 0.92005 0.92521 0.91567 0.89975 0.92602 0.91905 0.91783 0.77929 0.91017 0.91225 0.92239 0.89475 0.92230 0.96532 0.96613 0.93020 0.90823 0.91963 0.91318 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.09 37.16 0.34 -1.00 16 2 C -0.02 -0.26 3.20 -91.77 -0.29 -0.55 16 3 C -0.14 -1.38 9.18 37.16 0.34 -1.04 16 4 C 0.12 1.42 5.38 -83.89 -0.45 0.97 16 5 N -0.46 -5.31 10.31 -11.53 -0.12 -5.43 16 6 C 0.01 0.13 12.22 51.75 0.63 0.76 16 7 S 0.19 2.03 23.21 -107.50 -2.50 -0.46 16 8 C -0.27 -3.61 4.19 -37.10 -0.16 -3.76 16 9 C 0.59 9.21 6.43 -12.85 -0.08 9.13 16 10 O -0.53 -9.77 16.52 5.19 0.09 -9.68 16 11 N -0.59 -8.62 2.97 -174.31 -0.52 -9.14 16 12 C 0.11 1.47 6.31 -3.71 -0.02 1.44 16 13 C -0.12 -1.99 5.19 -26.59 -0.14 -2.13 16 14 C -0.08 -1.51 2.10 -90.56 -0.19 -1.70 16 15 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 16 C -0.52 -13.74 8.39 -34.44 -0.29 -14.03 16 17 H 0.06 1.42 7.05 -52.49 -0.37 1.05 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 20 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 24 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 25 C 0.11 1.61 6.44 -3.71 -0.02 1.58 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 29 H 0.08 0.98 7.11 -51.93 -0.37 0.61 16 30 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.07 0.94 6.38 -51.93 -0.33 0.61 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -31.39 375.31 -9.64 -41.04 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.27 Total: -1.92 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -0.70 Total: -10.53 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.10 Total: -40.06 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.50 Total: -0.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.39 -9.64 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.685 kcal (2) G-P(sol) polarization free energy of solvation -31.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds