Wall clock time and date at job start Tue Mar 31 2020 13:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46795 * 2 1 4 4 C 1.50699 * 109.47372 * 120.00402 * 2 1 3 5 5 N 1.30942 * 122.90185 * 305.18792 * 4 2 1 6 6 C 1.29430 * 117.36355 * 180.35039 * 5 4 2 7 7 S 1.70952 * 110.38876 * 359.70641 * 6 5 4 8 8 C 1.35665 * 122.90502 * 124.99636 * 4 2 1 9 9 C 1.46681 * 126.12848 * 359.95898 * 8 4 2 10 10 O 1.21693 * 119.99421 * 94.96171 * 9 8 4 11 11 N 1.34773 * 119.99905 * 274.95865 * 9 8 4 12 12 C 1.46926 * 120.63486 * 354.90076 * 11 9 8 13 13 C 1.53190 * 108.89327 * 233.51530 * 12 11 9 14 14 C 1.53075 * 109.29415 * 305.57863 * 13 12 11 15 15 C 1.53006 * 109.44943 * 181.24255 * 14 13 12 16 16 C 1.50699 * 109.46897 * 64.78692 * 15 14 13 17 17 H 1.07996 * 120.00373 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99786 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99728 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00092 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47056 * 89.99765 * 20 18 16 22 22 H 1.48492 * 109.47361 * 210.00154 * 20 18 16 23 23 H 1.48502 * 109.47237 * 330.00347 * 20 18 16 24 24 C 1.53041 * 109.65844 * 61.15454 * 14 13 12 25 25 C 1.46929 * 120.62787 * 174.87895 * 11 9 8 26 26 H 1.08997 * 109.47807 * 59.99474 * 1 2 3 27 27 H 1.09001 * 109.47257 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47090 * 299.99411 * 1 2 3 29 29 H 1.09001 * 109.46812 * 240.00116 * 2 1 3 30 30 H 1.09007 * 109.46791 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47640 * 299.99879 * 3 2 1 32 32 H 1.09001 * 109.47345 * 60.00443 * 3 2 1 33 33 H 1.07994 * 124.81057 * 179.72611 * 6 5 4 34 34 H 1.09000 * 109.58142 * 353.37459 * 12 11 9 35 35 H 1.08996 * 109.58846 * 113.65474 * 12 11 9 36 36 H 1.09003 * 109.49590 * 65.38566 * 13 12 11 37 37 H 1.09000 * 109.49779 * 185.48072 * 13 12 11 38 38 H 1.09000 * 109.34361 * 301.12454 * 14 13 12 39 39 H 1.08998 * 109.46895 * 184.78783 * 15 14 13 40 40 H 1.09000 * 109.46962 * 304.78548 * 15 14 13 41 41 H 0.97000 * 119.99740 * 180.02562 * 19 18 16 42 42 H 1.09007 * 109.49166 * 178.75087 * 24 14 13 43 43 H 1.08998 * 109.52681 * 58.66606 * 24 14 13 44 44 H 1.09001 * 109.58714 * 246.20422 * 25 11 9 45 45 H 1.09003 * 109.58958 * 6.47976 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.6722 -0.3733 2.4433 6 6 2.1750 -1.0526 3.4236 7 16 3.2184 -2.2702 2.8311 8 6 2.8940 -1.7571 1.1769 9 6 3.4590 -2.3509 -0.0395 10 8 4.5503 -1.9923 -0.4412 11 7 2.7695 -3.2935 -0.7121 12 6 1.5035 -3.8170 -0.1810 13 6 1.5867 -5.3453 -0.1168 14 6 1.9660 -5.8896 -1.4963 15 6 2.0198 -7.4178 -1.4438 16 6 0.6423 -7.9595 -1.1611 17 1 -0.1886 -7.2817 -1.0322 18 6 0.4424 -9.3206 -1.0681 19 7 1.4541 -10.1460 -1.2256 20 14 -1.2652 -9.9922 -0.7183 21 1 -1.9773 -10.2259 -2.0003 22 1 -1.1509 -11.2725 0.0251 23 1 -2.0251 -9.0118 0.0982 24 6 3.3363 -5.3449 -1.9058 25 6 3.2693 -3.8169 -1.9908 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.9648 -0.8756 4.4680 34 1 1.3341 -3.4178 0.8190 35 1 0.6832 -3.5229 -0.8356 36 1 2.3455 -5.6381 0.6089 37 1 0.6202 -5.7499 0.1834 38 1 1.2184 -5.5776 -2.2256 39 1 2.3719 -7.8020 -2.4012 40 1 2.7024 -7.7304 -0.6536 41 1 1.3135 -11.1035 -1.1605 42 1 3.6135 -5.7516 -2.8784 43 1 4.0804 -5.6357 -1.1643 44 1 2.5932 -3.5249 -2.7945 45 1 4.2638 -3.4157 -2.1863 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563187295.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:49 Heat of formation + Delta-G solvation = -33.008106 kcal Electronic energy + Delta-G solvation = -25586.939896 eV Core-core repulsion = 22115.459746 eV Total energy + Delta-G solvation = -3471.480150 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79213 -40.57508 -38.73191 -35.92982 -35.71822 -34.07631 -32.48066 -31.20738 -29.73930 -28.05469 -27.12367 -26.15626 -24.27038 -23.96744 -23.25767 -22.02508 -20.83832 -19.54501 -18.78710 -18.42869 -18.31626 -17.43726 -16.53287 -16.45449 -15.80086 -15.66260 -15.27711 -15.24089 -15.11764 -14.94163 -14.59655 -14.53613 -14.25897 -13.94129 -13.82966 -13.43626 -13.28261 -13.01175 -12.99463 -12.77040 -12.52922 -12.32904 -12.19649 -12.13945 -11.97468 -11.89964 -11.78988 -11.51623 -11.33221 -11.09488 -10.86973 -10.72400 -10.52444 -10.42691 -9.88858 -9.75918 -8.15310 -6.24661 -0.56385 -0.00410 0.59290 1.42901 1.42989 1.51620 1.53629 1.61633 1.93935 2.43699 3.11923 3.18768 3.36997 3.79940 3.83458 3.97984 4.02048 4.07354 4.14304 4.18389 4.30482 4.35128 4.43087 4.46444 4.60998 4.75225 4.79299 4.83926 4.85716 4.91654 4.94159 4.97949 5.05900 5.13586 5.27097 5.30322 5.30578 5.35638 5.39769 5.48576 5.57343 5.80846 5.90219 6.18109 6.30132 6.57762 6.86879 6.92266 7.44209 8.96651 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.003364 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.027931 B = 8321.262200 C = 8612.050174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.028 4.028 3 C -0.134 4.134 4 C 0.124 3.876 5 N -0.480 5.480 6 C 0.041 3.959 7 S 0.191 5.809 8 C -0.309 4.309 9 C 0.599 3.401 10 O -0.569 6.569 11 N -0.590 5.590 12 C 0.117 3.883 13 C -0.111 4.111 14 C -0.072 4.072 15 C 0.033 3.967 16 C -0.525 4.525 17 H 0.067 0.933 18 C -0.003 4.003 19 N -0.937 5.937 20 Si 0.958 3.042 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.259 1.259 24 C -0.121 4.121 25 C 0.117 3.883 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.245 0.755 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.067 0.933 39 H -0.012 1.012 40 H -0.016 1.016 41 H 0.260 0.740 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.092 0.908 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 21.855 7.080 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.050 4.050 3 C -0.192 4.192 4 C -0.013 4.013 5 N -0.193 5.193 6 C -0.254 4.254 7 S 0.447 5.553 8 C -0.433 4.433 9 C 0.385 3.615 10 O -0.450 6.450 11 N -0.321 5.321 12 C -0.005 4.005 13 C -0.149 4.149 14 C -0.091 4.091 15 C -0.004 4.004 16 C -0.564 4.564 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.578 5.578 20 Si 0.783 3.217 21 H -0.201 1.201 22 H -0.214 1.214 23 H -0.183 1.183 24 C -0.160 4.160 25 C -0.004 4.004 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.261 0.739 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.006 0.994 40 H 0.003 0.997 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.637 21.500 7.551 22.796 hybrid contribution -0.550 -0.822 -0.528 1.121 sum -1.187 20.678 7.023 21.870 Atomic orbital electron populations 1.21725 0.91890 1.02251 1.03192 1.19908 0.97772 0.96317 0.90960 1.21729 1.00217 0.93919 1.03317 1.20655 0.93612 0.92808 0.94265 1.65982 1.25786 1.29084 0.98409 1.29374 0.96446 0.94839 1.04789 1.84228 1.43292 1.33095 0.94705 1.25279 1.11470 1.07477 0.99037 1.17032 0.83544 0.78898 0.82073 1.90792 1.21357 1.63278 1.69532 1.48150 1.23669 1.37677 1.22602 1.21862 0.84708 0.93799 1.00115 1.21777 1.02301 0.93538 0.97285 1.21045 0.95785 0.95591 0.96654 1.19011 0.95504 0.91505 0.94397 1.21663 0.95525 0.91852 1.47310 0.91437 1.25948 1.00660 0.97884 0.95481 1.70112 1.32819 1.03095 1.51799 0.85544 0.79920 0.77785 0.78403 1.20098 1.21440 1.18279 1.21911 0.97665 0.94478 1.01910 1.21725 1.01137 0.93308 0.84254 0.90482 0.92931 0.91637 0.91117 0.94060 0.90186 0.91615 0.73870 0.89731 0.89305 0.93673 0.90339 0.91446 0.99377 0.99742 0.93088 0.90390 0.93602 0.89008 0.89646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 9.09 71.98 0.65 -1.58 16 2 C -0.03 -0.58 3.20 -11.54 -0.04 -0.62 16 3 C -0.13 -2.43 9.18 71.98 0.66 -1.77 16 4 C 0.12 2.84 5.38 42.09 0.23 3.07 16 5 N -0.48 -9.83 10.31 -190.40 -1.96 -11.79 16 6 C 0.04 0.63 12.22 130.60 1.60 2.23 16 7 S 0.19 3.80 23.21 -56.49 -1.31 2.49 16 8 C -0.31 -7.93 4.19 23.88 0.10 -7.83 16 9 C 0.60 18.29 6.43 86.45 0.56 18.85 16 10 O -0.57 -21.07 16.52 -4.33 -0.07 -21.14 16 11 N -0.59 -16.72 2.97 -823.62 -2.45 -19.17 16 12 C 0.12 3.08 6.31 86.36 0.54 3.62 16 13 C -0.11 -3.70 5.19 30.68 0.16 -3.54 16 14 C -0.07 -2.70 2.10 -10.75 -0.02 -2.72 16 15 C 0.03 1.65 4.45 29.85 0.13 1.78 16 16 C -0.53 -28.11 8.39 25.60 0.21 -27.89 16 17 H 0.07 3.38 7.05 -2.91 -0.02 3.36 16 18 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 19 N -0.94 -56.34 13.29 21.45 0.28 -56.06 16 20 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 C -0.12 -3.98 5.36 30.67 0.16 -3.82 16 25 C 0.12 3.28 6.44 86.36 0.56 3.84 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 29 H 0.07 1.60 7.11 -2.39 -0.02 1.58 16 30 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.25 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.08 2.05 6.38 -2.39 -0.02 2.04 16 35 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.08 2.76 6.91 -2.39 -0.02 2.74 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 39 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 43 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.09 2.48 6.99 -2.39 -0.02 2.47 16 Total: -1.00 -69.36 375.31 3.45 -65.90 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 0.97 Total: 10.90 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: 5.97 Total: -16.06 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -4.13 Total: -87.02 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.07 Total: -21.14 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: 3.80 SS G_CDS: -1.31 Total: 2.49 kcal Total: -69.36 3.45 -65.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187295.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.895 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds