Wall clock time and date at job start Tue Mar 31 2020 14:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 110.99899 * 2 1 4 4 C 1.50707 * 109.47281 * 66.04793 * 3 2 1 5 5 O 1.21297 * 119.99563 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00002 * 179.97438 * 4 3 2 7 7 C 1.39942 * 119.99799 * 175.96006 * 6 4 3 8 8 C 1.38681 * 120.11707 * 34.38985 * 7 6 4 9 9 C 1.38215 * 120.01772 * 179.97438 * 8 7 6 10 10 C 1.38392 * 120.25617 * 0.02738 * 9 8 7 11 11 C 1.38091 * 120.22500 * 359.97283 * 10 9 8 12 12 C 1.38989 * 119.97664 * 0.02562 * 11 10 9 13 13 S 1.76199 * 120.12408 * 180.02562 * 12 11 10 14 14 C 1.76201 * 99.99925 * 353.11271 * 13 12 11 15 15 H 1.08000 * 119.99974 * 5.09920 * 14 13 12 16 16 C 1.38688 * 119.99678 * 185.09953 * 14 13 12 17 17 N 1.31653 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46971 * 60.00434 * 18 16 14 20 20 H 1.48497 * 109.47309 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47453 * 300.00355 * 18 16 14 22 22 C 1.46893 * 110.99709 * 236.04755 * 2 1 3 23 23 C 1.52998 * 109.46920 * 183.95767 * 22 2 1 24 24 C 1.53002 * 109.47284 * 303.95306 * 22 2 1 25 25 C 1.52994 * 109.47535 * 63.95733 * 22 2 1 26 26 H 1.08998 * 109.47007 * 59.99934 * 1 2 3 27 27 H 1.08998 * 109.47698 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47152 * 300.00074 * 1 2 3 29 29 H 1.08998 * 109.47520 * 306.04792 * 3 2 1 30 30 H 1.09003 * 109.47119 * 186.04306 * 3 2 1 31 31 H 0.96998 * 120.00320 * 355.95432 * 6 4 3 32 32 H 1.08000 * 119.98619 * 0.26383 * 8 7 6 33 33 H 1.08003 * 119.87617 * 179.97438 * 9 8 7 34 34 H 1.07991 * 119.89241 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.00955 * 180.02562 * 11 10 9 36 36 H 0.97003 * 119.99851 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47416 * 59.99737 * 23 22 2 38 38 H 1.09000 * 109.47621 * 179.97438 * 23 22 2 39 39 H 1.09004 * 109.47258 * 299.99639 * 23 22 2 40 40 H 1.08997 * 109.46811 * 60.00075 * 24 22 2 41 41 H 1.09000 * 109.47166 * 180.02562 * 24 22 2 42 42 H 1.09001 * 109.47055 * 300.00265 * 24 22 2 43 43 H 1.08993 * 109.47378 * 59.99642 * 25 22 2 44 44 H 1.09000 * 109.47444 * 179.97438 * 25 22 2 45 45 H 1.09006 * 109.47009 * 300.00036 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0189 3.3198 1.5237 7 6 1.6145 3.9753 2.6921 8 6 1.4799 3.2667 3.8766 9 6 1.0808 3.9162 5.0295 10 6 0.8136 5.2739 5.0079 11 6 0.9442 5.9896 3.8342 12 6 1.3449 5.3460 2.6693 13 16 1.5136 6.2556 1.1697 14 6 0.8655 7.8121 1.6814 15 1 0.5920 7.9700 2.7142 16 6 0.7065 8.8344 0.7578 17 7 1.0394 8.6418 -0.5013 18 14 0.0187 10.4844 1.3002 19 1 0.9035 11.0726 2.3377 20 1 -0.0518 11.3992 0.1326 21 1 -1.3427 10.2929 1.8613 22 6 1.9954 -0.7659 -1.1376 23 6 3.5216 -0.8264 -1.0491 24 6 1.4260 -2.1856 -1.1037 25 6 1.5869 -0.0836 -2.4446 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5611 1.9274 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 2.5742 3.7814 0.8761 32 1 1.6915 2.2078 3.8991 33 1 0.9763 3.3620 5.9505 34 1 0.5018 5.7755 5.9121 35 1 0.7352 7.0491 3.8215 36 1 0.9279 9.3568 -1.1473 37 1 3.8127 -1.3125 -0.1180 38 1 3.9123 -1.3951 -1.8930 39 1 3.9274 0.1850 -1.0733 40 1 0.3387 -2.1426 -1.1667 41 1 1.8169 -2.7541 -1.9476 42 1 1.7170 -2.6718 -0.1726 43 1 1.9926 0.9277 -2.4687 44 1 1.9779 -0.6517 -3.2887 45 1 0.4995 -0.0405 -2.5076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566184272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:30 Heat of formation + Delta-G solvation = 1.727949 kcal Electronic energy + Delta-G solvation = -24962.588902 eV Core-core repulsion = 21492.615020 eV Total energy + Delta-G solvation = -3469.973882 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31721 -38.94348 -37.48868 -34.31691 -32.76802 -32.69768 -30.31854 -29.86712 -28.53886 -27.53086 -26.38210 -25.87359 -24.58933 -22.37943 -21.88135 -19.98415 -18.85374 -18.30988 -17.18556 -16.73192 -16.05226 -15.85322 -15.38501 -15.09249 -14.82416 -14.67883 -14.17431 -13.98974 -13.82790 -13.61632 -13.17253 -12.93401 -12.91444 -12.52830 -12.38874 -12.13875 -12.06584 -12.03033 -11.67075 -11.43062 -11.31244 -11.24090 -11.21224 -11.19715 -11.09403 -10.69980 -10.40378 -10.03317 -9.75088 -9.54907 -9.29872 -8.79813 -8.63897 -8.30710 -7.67998 -6.53841 -6.53384 -4.24723 1.89130 2.10508 2.91668 3.02172 3.11004 3.14546 3.20891 3.37058 3.95803 3.98483 4.45287 4.59357 4.70136 4.85254 4.89613 4.95436 5.07645 5.15166 5.20756 5.38647 5.40109 5.45949 5.55946 5.61203 5.65707 5.68007 5.68962 5.69803 5.74994 5.88817 5.90570 6.00150 6.14433 6.17472 6.24700 6.27468 6.59338 6.82440 6.92690 6.94731 7.05041 7.15070 7.22706 7.44551 7.69977 7.82428 8.11991 8.49435 8.94813 10.53381 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003363 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.756687 B = 8324.572293 C = 9699.868119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 N -0.509 5.509 3 C 0.029 3.971 4 C 0.514 3.486 5 O -0.513 6.513 6 N -0.660 5.660 7 C 0.124 3.876 8 C -0.101 4.101 9 C -0.149 4.149 10 C -0.115 4.115 11 C -0.131 4.131 12 C -0.103 4.103 13 S 0.032 5.968 14 C -0.546 4.546 15 H 0.094 0.906 16 C 0.078 3.922 17 N -0.866 5.866 18 Si 0.924 3.076 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.270 1.270 22 C 0.100 3.900 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.185 4.185 26 H 0.024 0.976 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.409 0.591 32 H 0.131 0.869 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.138 0.862 36 H 0.274 0.726 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.050 -15.485 -1.630 15.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 N -0.234 5.234 3 C -0.101 4.101 4 C 0.300 3.700 5 O -0.387 6.387 6 N -0.305 5.305 7 C 0.022 3.978 8 C -0.123 4.123 9 C -0.173 4.173 10 C -0.136 4.136 11 C -0.157 4.157 12 C -0.220 4.220 13 S 0.286 5.714 14 C -0.693 4.693 15 H 0.112 0.888 16 C -0.132 4.132 17 N -0.500 5.500 18 Si 0.749 3.251 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.195 1.195 22 C 0.010 3.990 23 C -0.200 4.200 24 C -0.197 4.197 25 C -0.244 4.244 26 H 0.042 0.958 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.088 0.912 30 H 0.125 0.875 31 H 0.245 0.755 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.210 -16.259 -2.165 16.714 hybrid contribution -0.951 2.167 0.334 2.390 sum 2.259 -14.092 -1.831 14.389 Atomic orbital electron populations 1.22668 0.86724 1.02401 1.01868 1.61926 1.08707 1.11164 1.41560 1.22069 1.02538 0.90474 0.95068 1.20531 0.79312 0.81162 0.88971 1.90633 1.38656 1.63514 1.45941 1.43345 1.51951 1.13508 1.21738 1.17147 1.04603 0.90042 0.86009 1.20974 1.00618 1.00042 0.90645 1.20756 1.04489 0.94543 0.97488 1.20967 1.00878 0.94265 0.97459 1.21283 1.02167 1.00838 0.91426 1.22527 1.02127 0.95422 1.01942 1.83068 1.73460 1.07699 1.07167 1.23230 1.50016 0.97193 0.98849 0.88831 1.25078 0.94248 0.99536 0.94363 1.69987 1.44043 1.34002 1.01949 0.86115 0.79731 0.80796 0.78450 1.19470 1.20593 1.19500 1.21133 0.95452 0.94113 0.88254 1.21935 0.93628 1.02072 1.02364 1.21900 1.00953 0.94609 1.02198 1.22537 1.02058 1.01388 0.98371 0.95796 0.91151 0.89251 0.91245 0.87471 0.75500 0.85123 0.87031 0.87131 0.84498 0.91661 0.91593 0.92137 0.92401 0.92309 0.92270 0.91672 0.92173 0.91961 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 8.42 60.07 0.51 0.64 16 2 N -0.51 -6.13 4.32 -228.60 -0.99 -7.11 16 3 C 0.03 0.36 4.55 -4.98 -0.02 0.34 16 4 C 0.51 8.21 7.40 -10.98 -0.08 8.13 16 5 O -0.51 -9.53 11.73 5.54 0.07 -9.47 16 6 N -0.66 -11.21 5.02 -9.70 -0.05 -11.26 16 7 C 0.12 2.45 6.32 -83.44 -0.53 1.92 16 8 C -0.10 -1.90 8.69 -39.43 -0.34 -2.24 16 9 C -0.15 -2.60 10.04 -39.53 -0.40 -3.00 16 10 C -0.11 -2.08 10.03 -39.58 -0.40 -2.48 16 11 C -0.13 -2.75 9.26 -39.36 -0.36 -3.12 16 12 C -0.10 -2.25 6.12 -38.75 -0.24 -2.49 16 13 S 0.03 0.77 20.53 -107.50 -2.21 -1.43 16 14 C -0.55 -14.42 9.07 30.90 0.28 -14.14 16 15 H 0.09 2.38 4.83 -52.49 -0.25 2.12 16 16 C 0.08 2.05 5.49 -17.46 -0.10 1.95 16 17 N -0.87 -23.75 13.22 55.48 0.73 -23.02 16 18 Si 0.92 20.17 29.55 -169.99 -5.02 15.15 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 21 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 22 C 0.10 0.95 0.71 -131.61 -0.09 0.85 16 23 C -0.14 -1.21 8.27 37.16 0.31 -0.90 16 24 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 25 C -0.18 -1.64 7.79 37.15 0.29 -1.35 16 26 H 0.02 0.28 6.61 -51.93 -0.34 -0.06 16 27 H 0.07 0.77 6.01 -51.93 -0.31 0.46 16 28 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 29 H 0.07 0.82 6.86 -51.93 -0.36 0.46 16 30 H 0.11 1.11 5.83 -51.93 -0.30 0.80 16 31 H 0.41 6.35 7.96 -40.82 -0.32 6.03 16 32 H 0.13 2.43 6.20 -52.49 -0.33 2.10 16 33 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.14 2.96 4.95 -52.49 -0.26 2.70 16 36 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.48 6.20 -51.93 -0.32 0.16 16 40 H 0.06 0.50 6.26 -51.93 -0.33 0.17 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16 LS Contribution 361.90 15.07 5.45 5.45 Total: -1.00 -29.79 361.90 -9.10 -38.89 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.21 Total: 9.55 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -0.87 Total: -16.75 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.30 Total: -41.39 kcal Atomic # 8 Polarization: -9.53 SS G_CDS: 0.07 Total: -9.47 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.21 Total: -1.43 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.79 -9.10 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566184272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.620 kcal (2) G-P(sol) polarization free energy of solvation -29.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds