Wall clock time and date at job start Tue Mar 31 2020 14:10:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46895 * 110.99899 * 2 1 4 4 C 1.50707 * 109.47281 * 66.04793 * 3 2 1 5 5 O 1.21297 * 119.99563 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00002 * 179.97438 * 4 3 2 7 7 C 1.39942 * 119.99799 * 175.96006 * 6 4 3 8 8 C 1.38681 * 120.11707 * 34.38985 * 7 6 4 9 9 C 1.38215 * 120.01772 * 179.97438 * 8 7 6 10 10 C 1.38392 * 120.25617 * 0.02738 * 9 8 7 11 11 C 1.38091 * 120.22500 * 359.97283 * 10 9 8 12 12 C 1.38989 * 119.97664 * 0.02562 * 11 10 9 13 13 S 1.76199 * 120.12408 * 180.02562 * 12 11 10 14 14 C 1.76201 * 99.99925 * 353.11271 * 13 12 11 15 15 H 1.08000 * 119.99974 * 5.09920 * 14 13 12 16 16 C 1.38688 * 119.99678 * 185.09953 * 14 13 12 17 17 N 1.31653 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99717 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46971 * 60.00434 * 18 16 14 20 20 H 1.48497 * 109.47309 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47453 * 300.00355 * 18 16 14 22 22 C 1.46893 * 110.99709 * 236.04755 * 2 1 3 23 23 C 1.52998 * 109.46920 * 183.95767 * 22 2 1 24 24 C 1.53002 * 109.47284 * 303.95306 * 22 2 1 25 25 C 1.52994 * 109.47535 * 63.95733 * 22 2 1 26 26 H 1.08998 * 109.47007 * 59.99934 * 1 2 3 27 27 H 1.08998 * 109.47698 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47152 * 300.00074 * 1 2 3 29 29 H 1.08998 * 109.47520 * 306.04792 * 3 2 1 30 30 H 1.09003 * 109.47119 * 186.04306 * 3 2 1 31 31 H 0.96998 * 120.00320 * 355.95432 * 6 4 3 32 32 H 1.08000 * 119.98619 * 0.26383 * 8 7 6 33 33 H 1.08003 * 119.87617 * 179.97438 * 9 8 7 34 34 H 1.07991 * 119.89241 * 179.97438 * 10 9 8 35 35 H 1.08001 * 120.00955 * 180.02562 * 11 10 9 36 36 H 0.97003 * 119.99851 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47416 * 59.99737 * 23 22 2 38 38 H 1.09000 * 109.47621 * 179.97438 * 23 22 2 39 39 H 1.09004 * 109.47258 * 299.99639 * 23 22 2 40 40 H 1.08997 * 109.46811 * 60.00075 * 24 22 2 41 41 H 1.09000 * 109.47166 * 180.02562 * 24 22 2 42 42 H 1.09001 * 109.47055 * 300.00265 * 24 22 2 43 43 H 1.08993 * 109.47378 * 59.99642 * 25 22 2 44 44 H 1.09000 * 109.47444 * 179.97438 * 25 22 2 45 45 H 1.09006 * 109.47009 * 300.00036 * 25 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 8 1.0047 1.4455 2.1408 6 7 2.0189 3.3198 1.5237 7 6 1.6145 3.9753 2.6921 8 6 1.4799 3.2667 3.8766 9 6 1.0808 3.9162 5.0295 10 6 0.8136 5.2739 5.0079 11 6 0.9442 5.9896 3.8342 12 6 1.3449 5.3460 2.6693 13 16 1.5136 6.2556 1.1697 14 6 0.8655 7.8121 1.6814 15 1 0.5920 7.9700 2.7142 16 6 0.7065 8.8344 0.7578 17 7 1.0394 8.6418 -0.5013 18 14 0.0187 10.4844 1.3002 19 1 0.9035 11.0726 2.3377 20 1 -0.0518 11.3992 0.1326 21 1 -1.3427 10.2929 1.8613 22 6 1.9954 -0.7659 -1.1376 23 6 3.5216 -0.8264 -1.0491 24 6 1.4260 -2.1856 -1.1037 25 6 1.5869 -0.0836 -2.4446 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5611 1.9274 -0.8309 30 1 3.0797 1.3444 -0.1082 31 1 2.5742 3.7814 0.8761 32 1 1.6915 2.2078 3.8991 33 1 0.9763 3.3620 5.9505 34 1 0.5018 5.7755 5.9121 35 1 0.7352 7.0491 3.8215 36 1 0.9279 9.3568 -1.1473 37 1 3.8127 -1.3125 -0.1180 38 1 3.9123 -1.3951 -1.8930 39 1 3.9274 0.1850 -1.0733 40 1 0.3387 -2.1426 -1.1667 41 1 1.8169 -2.7541 -1.9476 42 1 1.7170 -2.6718 -0.1726 43 1 1.9926 0.9277 -2.4687 44 1 1.9779 -0.6517 -3.2887 45 1 0.4995 -0.0405 -2.5076 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566184272.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:29 Heat of formation + Delta-G solvation = -16.019762 kcal Electronic energy + Delta-G solvation = -24963.358501 eV Core-core repulsion = 21492.615020 eV Total energy + Delta-G solvation = -3470.743481 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58083 -40.03919 -38.83462 -35.73417 -34.72411 -33.59792 -31.88407 -31.08350 -29.63804 -28.22111 -27.86335 -27.25455 -25.57856 -23.88406 -23.32860 -21.34098 -20.17233 -19.59325 -18.47169 -18.15725 -17.55796 -17.04837 -16.93369 -16.44220 -16.00956 -15.72389 -15.57106 -15.22500 -14.86376 -14.69933 -14.61480 -14.51877 -14.13390 -13.86257 -13.36982 -13.31418 -13.04613 -12.97135 -12.88903 -12.79032 -12.75049 -12.72822 -12.27449 -12.17883 -12.10596 -11.93292 -11.64360 -11.45247 -11.38849 -11.21995 -10.67965 -10.64214 -10.33345 -9.27127 -9.16983 -8.49404 -8.35675 -6.23558 0.39033 0.54146 1.26650 1.39786 1.44175 1.57467 1.62894 2.03524 2.17982 2.85365 2.97175 2.98669 3.16793 3.68886 3.86028 4.01495 4.08814 4.18627 4.24064 4.26828 4.30072 4.50516 4.52173 4.58669 4.68223 4.71474 4.72610 4.78690 4.91189 4.96524 5.00685 5.03213 5.04579 5.11299 5.24851 5.34899 5.36508 5.44123 5.46045 5.49531 5.66506 5.72253 5.96320 6.12192 6.18641 6.21934 6.49034 6.95879 7.17178 8.58966 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.003363 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.756687 B = 8324.572293 C = 9699.868119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.521 5.521 3 C 0.037 3.963 4 C 0.512 3.488 5 O -0.538 6.538 6 N -0.661 5.661 7 C 0.124 3.876 8 C -0.111 4.111 9 C -0.132 4.132 10 C -0.113 4.113 11 C -0.146 4.146 12 C -0.125 4.125 13 S -0.010 6.010 14 C -0.566 4.566 15 H 0.096 0.904 16 C 0.028 3.972 17 N -0.901 5.901 18 Si 0.990 3.010 19 H -0.262 1.262 20 H -0.274 1.274 21 H -0.266 1.266 22 C 0.097 3.903 23 C -0.141 4.141 24 C -0.137 4.137 25 C -0.182 4.182 26 H 0.027 0.973 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.130 0.870 31 H 0.414 0.586 32 H 0.135 0.865 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.276 0.724 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.078 0.922 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -16.507 -0.901 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.245 5.245 3 C -0.094 4.094 4 C 0.301 3.699 5 O -0.415 6.415 6 N -0.306 5.306 7 C 0.022 3.978 8 C -0.133 4.133 9 C -0.155 4.155 10 C -0.134 4.134 11 C -0.171 4.171 12 C -0.241 4.241 13 S 0.241 5.759 14 C -0.713 4.713 15 H 0.114 0.886 16 C -0.179 4.179 17 N -0.536 5.536 18 Si 0.812 3.188 19 H -0.186 1.186 20 H -0.199 1.199 21 H -0.191 1.191 22 C 0.009 3.991 23 C -0.199 4.199 24 C -0.194 4.194 25 C -0.241 4.241 26 H 0.045 0.955 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.251 0.749 32 H 0.152 0.848 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.097 0.903 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.352 -17.328 -1.412 17.705 hybrid contribution -0.982 2.289 0.226 2.501 sum 2.370 -15.038 -1.186 15.270 Atomic orbital electron populations 1.22551 0.87315 1.02832 1.00442 1.61932 1.08344 1.10941 1.43312 1.22064 1.03916 0.90608 0.92768 1.21218 0.78326 0.80497 0.89891 1.90614 1.39711 1.63995 1.47174 1.43447 1.52039 1.13921 1.21236 1.17360 1.03536 0.89520 0.87366 1.21177 1.01038 1.00261 0.90832 1.21222 1.01496 0.94423 0.98329 1.21285 1.00003 0.94555 0.97526 1.21378 1.02659 1.00626 0.92464 1.22488 1.04460 0.96125 1.01051 1.82916 1.75268 1.08020 1.09709 1.23592 1.50195 0.98250 0.99249 0.88641 1.25998 0.94466 1.03075 0.94336 1.70093 1.45382 1.35157 1.02995 0.85108 0.79061 0.76367 0.78276 1.18632 1.19891 1.19058 1.21273 0.96142 0.94229 0.87504 1.21939 0.92730 1.02388 1.02812 1.21892 1.00858 0.94026 1.02642 1.22510 1.01653 1.01341 0.98581 0.95476 0.89826 0.92319 0.90612 0.85232 0.74893 0.84774 0.83289 0.83726 0.85773 0.91492 0.92292 0.90328 0.92314 0.92513 0.90421 0.92376 0.92607 0.90342 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.42 127.69 1.08 1.48 16 2 N -0.52 -12.04 4.32 -877.17 -3.79 -15.83 16 3 C 0.04 0.88 4.55 85.56 0.39 1.27 16 4 C 0.51 16.35 7.40 87.66 0.65 17.00 16 5 O -0.54 -20.04 11.73 -3.08 -0.04 -20.07 16 6 N -0.66 -22.67 5.02 -302.98 -1.52 -24.20 16 7 C 0.12 4.91 6.32 38.31 0.24 5.16 16 8 C -0.11 -4.05 8.69 22.37 0.19 -3.85 16 9 C -0.13 -4.25 10.04 22.30 0.22 -4.03 16 10 C -0.11 -3.85 10.03 22.27 0.22 -3.63 16 11 C -0.15 -6.10 9.26 22.42 0.21 -5.90 16 12 C -0.12 -5.54 6.12 22.81 0.14 -5.40 16 13 S -0.01 -0.52 20.53 -56.49 -1.16 -1.68 16 14 C -0.57 -30.69 9.07 67.93 0.62 -30.07 16 15 H 0.10 4.98 4.83 -2.91 -0.01 4.96 16 16 C 0.03 1.47 5.49 84.83 0.47 1.93 16 17 N -0.90 -50.57 13.22 21.63 0.29 -50.29 16 18 Si 0.99 41.62 29.55 68.60 2.03 43.65 16 19 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 C 0.10 1.67 0.71 3.53 0.00 1.67 16 23 C -0.14 -2.09 8.27 71.98 0.60 -1.49 16 24 C -0.14 -2.05 8.12 71.98 0.58 -1.47 16 25 C -0.18 -2.91 7.79 71.98 0.56 -2.34 16 26 H 0.03 0.63 6.61 -2.39 -0.02 0.61 16 27 H 0.08 1.78 6.01 -2.39 -0.01 1.76 16 28 H 0.06 1.81 5.88 -2.39 -0.01 1.80 16 29 H 0.08 1.74 6.86 -2.39 -0.02 1.73 16 30 H 0.13 2.50 5.83 -2.39 -0.01 2.48 16 31 H 0.41 13.18 7.96 -92.71 -0.74 12.44 16 32 H 0.13 4.82 6.20 -2.91 -0.02 4.80 16 33 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.14 3.89 8.06 -2.92 -0.02 3.87 16 35 H 0.12 5.46 4.95 -2.91 -0.01 5.45 16 36 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 0.85 6.20 -2.38 -0.01 0.83 16 40 H 0.06 0.87 6.26 -2.39 -0.01 0.85 16 41 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.05 0.94 6.63 -2.39 -0.02 0.92 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 0.92 6.58 -2.38 -0.02 0.90 16 Total: -1.00 -65.42 361.90 2.26 -63.15 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: 0.29 Total: 34.92 kcal Atomic # 6 Polarization: -35.83 SS G_CDS: 6.17 Total: -29.66 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -5.02 Total: -90.31 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.04 Total: -20.07 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: -0.52 SS G_CDS: -1.16 Total: -1.68 kcal Total: -65.42 2.26 -63.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566184272.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.132 kcal (2) G-P(sol) polarization free energy of solvation -65.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds