Wall clock time and date at job start Tue Mar 31 2020 13:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47195 * 2 1 4 4 C 1.50707 * 109.46773 * 119.99940 * 2 1 3 5 5 S 1.70947 * 125.58199 * 295.06160 * 4 2 1 6 6 C 1.70774 * 91.12463 * 179.97438 * 5 4 2 7 7 N 1.28643 * 110.56191 * 0.02562 * 6 5 4 8 8 C 1.33564 * 115.76558 * 359.74021 * 7 6 5 9 9 C 1.47265 * 123.14140 * 180.29569 * 8 7 6 10 10 O 1.21634 * 119.99838 * 104.40463 * 9 8 7 11 11 N 1.34772 * 120.00296 * 284.40611 * 9 8 7 12 12 C 1.46923 * 120.62853 * 4.74332 * 11 9 8 13 13 C 1.52771 * 109.00652 * 233.58474 * 12 11 9 14 14 C 1.53039 * 109.38054 * 305.58752 * 13 12 11 15 15 C 1.52995 * 109.44971 * 181.25441 * 14 13 12 16 16 C 1.50705 * 109.47440 * 64.93715 * 15 14 13 17 17 H 1.08003 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00320 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99857 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47566 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47440 * 120.00249 * 20 18 16 23 23 H 1.48503 * 109.46974 * 239.99930 * 20 18 16 24 24 C 1.53044 * 109.54007 * 61.23888 * 14 13 12 25 25 C 1.46929 * 120.63237 * 185.01788 * 11 9 8 26 26 H 1.08994 * 109.47172 * 300.00611 * 1 2 3 27 27 H 1.08998 * 109.46617 * 60.00361 * 1 2 3 28 28 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47172 * 239.99389 * 2 1 3 30 30 H 1.09004 * 109.47416 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47043 * 299.99378 * 3 2 1 32 32 H 1.09004 * 109.47394 * 59.99519 * 3 2 1 33 33 H 1.08002 * 124.71826 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.59096 * 353.41229 * 12 11 9 35 35 H 1.09003 * 109.58966 * 113.84607 * 12 11 9 36 36 H 1.08998 * 109.56309 * 185.55563 * 13 12 11 37 37 H 1.08994 * 109.35818 * 65.49859 * 13 12 11 38 38 H 1.09008 * 109.45876 * 301.21943 * 14 13 12 39 39 H 1.08998 * 109.47344 * 184.93556 * 15 14 13 40 40 H 1.09000 * 109.47419 * 304.93804 * 15 14 13 41 41 H 0.97001 * 119.99618 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.49669 * 178.68465 * 24 14 13 43 43 H 1.08998 * 109.51860 * 58.60280 * 24 14 13 44 44 H 1.08993 * 109.58876 * 246.15487 * 25 11 9 45 45 H 1.08998 * 109.58373 * 6.44452 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 16 1.8086 -0.1868 2.8424 6 6 2.6631 -1.5408 3.4364 7 7 3.0591 -2.2865 2.4659 8 6 2.7293 -1.8689 1.2408 9 6 3.0936 -2.6002 0.0156 10 8 2.2524 -3.2462 -0.5798 11 7 4.3589 -2.5539 -0.4459 12 6 5.4089 -1.8646 0.3164 13 6 6.0962 -0.8464 -0.5918 14 6 6.5955 -1.5494 -1.8562 15 6 7.3115 -0.5373 -2.7527 16 6 8.5512 -0.0380 -2.0563 17 1 8.8034 -0.4061 -1.0728 18 6 9.3635 0.8887 -2.6747 19 7 9.0561 1.3373 -3.8722 20 14 10.9004 1.5070 -1.8117 21 1 11.0201 0.8523 -0.4842 22 1 12.0940 1.1827 -2.6335 23 1 10.8088 2.9781 -1.6310 24 6 5.4072 -2.1488 -2.6118 25 6 4.7134 -3.1864 -1.7238 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.8463 -1.7425 4.4815 34 1 4.9642 -1.3504 1.1684 35 1 6.1423 -2.5907 0.6672 36 1 6.9403 -0.3999 -0.0664 37 1 5.3842 -0.0679 -0.8655 38 1 7.2886 -2.3442 -1.5802 39 1 7.5902 -1.0165 -3.6912 40 1 6.6465 0.3019 -2.9567 41 1 9.6274 1.9896 -4.3070 42 1 5.7610 -2.6290 -3.5241 43 1 4.7016 -1.3581 -2.8670 44 1 5.3888 -4.0225 -1.5427 45 1 3.8101 -3.5464 -2.2162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571406222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:00 Heat of formation + Delta-G solvation = -18.056981 kcal Electronic energy + Delta-G solvation = -25803.121703 eV Core-core repulsion = 22332.289882 eV Total energy + Delta-G solvation = -3470.831821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.84569 -39.00180 -37.26470 -35.98761 -34.00517 -32.18430 -30.98298 -29.89635 -28.08497 -27.37162 -26.06405 -24.68174 -22.98207 -22.68352 -21.74244 -21.05724 -19.59023 -18.49048 -18.11017 -16.95547 -16.42326 -16.23503 -15.45375 -14.88216 -14.55644 -14.47391 -14.39780 -14.02910 -13.85819 -13.70014 -13.29721 -13.18047 -12.91625 -12.79730 -12.45101 -12.26592 -12.21928 -11.83414 -11.70055 -11.44704 -11.21814 -11.06022 -11.00592 -10.79616 -10.73936 -10.47725 -10.14428 -10.04451 -9.90055 -9.68509 -9.60246 -9.30172 -9.05009 -8.96355 -8.40867 -8.36912 -6.02404 -4.04300 0.45216 1.06582 1.46061 2.25168 2.64571 3.14058 3.28100 3.36369 3.39302 4.09067 4.36716 4.43188 4.62654 4.76449 4.89409 5.10177 5.17494 5.26760 5.32946 5.37245 5.38874 5.46762 5.50870 5.59535 5.63075 5.68106 5.69288 5.80470 5.85497 5.98413 5.98960 6.04242 6.06800 6.33463 6.37392 6.48596 6.63644 6.92878 6.95946 7.07969 7.31781 7.46953 7.64587 7.78599 7.97295 8.14808 8.39826 9.02334 9.59774 11.08854 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.003590 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.430346 B = 7797.794117 C = 8187.406429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.024 4.024 3 C -0.148 4.148 4 C -0.199 4.199 5 S 0.200 5.800 6 C -0.007 4.007 7 N -0.435 5.435 8 C 0.022 3.978 9 C 0.599 3.401 10 O -0.537 6.537 11 N -0.589 5.589 12 C 0.110 3.890 13 C -0.118 4.118 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.285 1.285 24 C -0.129 4.129 25 C 0.112 3.888 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.204 0.796 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.016 0.984 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.103 -1.914 12.941 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.045 4.045 3 C -0.206 4.206 4 C -0.322 4.322 5 S 0.455 5.545 6 C -0.306 4.306 7 N -0.149 5.149 8 C -0.114 4.114 9 C 0.383 3.617 10 O -0.414 6.414 11 N -0.320 5.320 12 C -0.012 4.012 13 C -0.156 4.156 14 C -0.100 4.100 15 C -0.009 4.009 16 C -0.554 4.554 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.167 4.167 25 C -0.010 4.010 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.220 0.780 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.034 0.966 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.625 -1.834 13.117 21.255 hybrid contribution 1.354 -0.120 -0.183 1.372 sum -15.270 -1.953 12.934 20.107 Atomic orbital electron populations 1.21895 0.93265 1.02654 1.02318 1.19713 0.96340 0.95833 0.92591 1.21953 1.02230 0.93912 1.02488 1.25469 1.05362 0.99820 1.01561 1.82696 1.50501 1.25508 0.95763 1.28358 1.02712 0.95945 1.03580 1.67031 1.20094 1.30110 0.97620 1.20203 1.02953 0.95400 0.92806 1.17102 0.82256 0.79720 0.82624 1.90792 1.49419 1.41876 1.59314 1.48054 1.07735 1.53864 1.22375 1.21804 0.89539 0.95614 0.94259 1.21839 1.00127 0.96829 0.96823 1.21203 0.94772 0.98756 0.95221 1.19122 0.94573 0.92991 0.94204 1.21270 1.07831 1.23521 1.02756 0.92573 1.25010 0.97900 0.96593 0.94897 1.69974 1.38340 1.31183 1.13952 0.86607 0.83440 0.78608 0.79775 1.19754 1.21067 1.21102 1.22037 0.98358 0.98046 0.98256 1.21755 1.00497 0.95584 0.83131 0.92439 0.91417 0.91958 0.89072 0.91602 0.91249 0.92366 0.77987 0.90989 0.91249 0.89635 0.92408 0.92228 0.96544 0.96639 0.93108 0.90855 0.92048 0.91387 0.89515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.16 37.16 0.34 -1.02 16 2 C -0.02 -0.27 3.19 -91.77 -0.29 -0.56 16 3 C -0.15 -1.48 9.05 37.15 0.34 -1.14 16 4 C -0.20 -2.42 5.03 -35.39 -0.18 -2.60 16 5 S 0.20 1.74 22.45 -107.50 -2.41 -0.67 16 6 C -0.01 -0.07 12.17 51.43 0.63 0.56 16 7 N -0.43 -5.93 10.30 -12.36 -0.13 -6.06 16 8 C 0.02 0.32 4.60 -84.53 -0.39 -0.07 16 9 C 0.60 10.10 6.40 -12.59 -0.08 10.02 16 10 O -0.54 -10.36 16.54 5.25 0.09 -10.27 16 11 N -0.59 -9.41 2.98 -174.36 -0.52 -9.93 16 12 C 0.11 1.69 6.32 -3.93 -0.02 1.67 16 13 C -0.12 -2.07 5.17 -26.83 -0.14 -2.21 16 14 C -0.08 -1.55 2.10 -90.58 -0.19 -1.74 16 15 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 16 C -0.52 -13.82 8.39 -34.44 -0.29 -14.11 16 17 H 0.06 1.46 7.06 -52.48 -0.37 1.09 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.13 -2.15 5.36 -26.61 -0.14 -2.29 16 25 C 0.11 1.73 6.42 -3.71 -0.02 1.70 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.23 7.17 -51.93 -0.37 0.86 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.49 7.84 -51.93 -0.41 0.08 16 33 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.07 1.06 6.04 -51.93 -0.31 0.75 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 1.59 6.91 -51.93 -0.36 1.24 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.09 1.34 7.03 -51.93 -0.37 0.98 16 LS Contribution 373.95 15.07 5.64 5.64 Total: -1.00 -32.15 373.95 -9.53 -41.68 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -7.24 Total: -1.15 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.67 Total: -9.76 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.09 Total: -41.54 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.41 Total: -0.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.15 -9.53 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571406222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.623 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds