Wall clock time and date at job start Tue Mar 31 2020 13:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47195 * 2 1 4 4 C 1.50707 * 109.46773 * 119.99940 * 2 1 3 5 5 S 1.70947 * 125.58199 * 295.06160 * 4 2 1 6 6 C 1.70774 * 91.12463 * 179.97438 * 5 4 2 7 7 N 1.28643 * 110.56191 * 0.02562 * 6 5 4 8 8 C 1.33564 * 115.76558 * 359.74021 * 7 6 5 9 9 C 1.47265 * 123.14140 * 180.29569 * 8 7 6 10 10 O 1.21634 * 119.99838 * 104.40463 * 9 8 7 11 11 N 1.34772 * 120.00296 * 284.40611 * 9 8 7 12 12 C 1.46923 * 120.62853 * 4.74332 * 11 9 8 13 13 C 1.52771 * 109.00652 * 233.58474 * 12 11 9 14 14 C 1.53039 * 109.38054 * 305.58752 * 13 12 11 15 15 C 1.52995 * 109.44971 * 181.25441 * 14 13 12 16 16 C 1.50705 * 109.47440 * 64.93715 * 15 14 13 17 17 H 1.08003 * 119.99503 * 0.02562 * 16 15 14 18 18 C 1.37870 * 120.00320 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99907 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99857 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47566 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47440 * 120.00249 * 20 18 16 23 23 H 1.48503 * 109.46974 * 239.99930 * 20 18 16 24 24 C 1.53044 * 109.54007 * 61.23888 * 14 13 12 25 25 C 1.46929 * 120.63237 * 185.01788 * 11 9 8 26 26 H 1.08994 * 109.47172 * 300.00611 * 1 2 3 27 27 H 1.08998 * 109.46617 * 60.00361 * 1 2 3 28 28 H 1.09003 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47172 * 239.99389 * 2 1 3 30 30 H 1.09004 * 109.47416 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47043 * 299.99378 * 3 2 1 32 32 H 1.09004 * 109.47394 * 59.99519 * 3 2 1 33 33 H 1.08002 * 124.71826 * 179.97438 * 6 5 4 34 34 H 1.08997 * 109.59096 * 353.41229 * 12 11 9 35 35 H 1.09003 * 109.58966 * 113.84607 * 12 11 9 36 36 H 1.08998 * 109.56309 * 185.55563 * 13 12 11 37 37 H 1.08994 * 109.35818 * 65.49859 * 13 12 11 38 38 H 1.09008 * 109.45876 * 301.21943 * 14 13 12 39 39 H 1.08998 * 109.47344 * 184.93556 * 15 14 13 40 40 H 1.09000 * 109.47419 * 304.93804 * 15 14 13 41 41 H 0.97001 * 119.99618 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.49669 * 178.68465 * 24 14 13 43 43 H 1.08998 * 109.51860 * 58.60280 * 24 14 13 44 44 H 1.08993 * 109.58876 * 246.15487 * 25 11 9 45 45 H 1.08998 * 109.58373 * 6.44452 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2306 5 16 1.8086 -0.1868 2.8424 6 6 2.6631 -1.5408 3.4364 7 7 3.0591 -2.2865 2.4659 8 6 2.7293 -1.8689 1.2408 9 6 3.0936 -2.6002 0.0156 10 8 2.2524 -3.2462 -0.5798 11 7 4.3589 -2.5539 -0.4459 12 6 5.4089 -1.8646 0.3164 13 6 6.0962 -0.8464 -0.5918 14 6 6.5955 -1.5494 -1.8562 15 6 7.3115 -0.5373 -2.7527 16 6 8.5512 -0.0380 -2.0563 17 1 8.8034 -0.4061 -1.0728 18 6 9.3635 0.8887 -2.6747 19 7 9.0561 1.3373 -3.8722 20 14 10.9004 1.5070 -1.8117 21 1 11.0201 0.8523 -0.4842 22 1 12.0940 1.1827 -2.6335 23 1 10.8088 2.9781 -1.6310 24 6 5.4072 -2.1488 -2.6118 25 6 4.7134 -3.1864 -1.7238 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 2.8463 -1.7425 4.4815 34 1 4.9642 -1.3504 1.1684 35 1 6.1423 -2.5907 0.6672 36 1 6.9403 -0.3999 -0.0664 37 1 5.3842 -0.0679 -0.8655 38 1 7.2886 -2.3442 -1.5802 39 1 7.5902 -1.0165 -3.6912 40 1 6.6465 0.3019 -2.9567 41 1 9.6274 1.9896 -4.3070 42 1 5.7610 -2.6290 -3.5241 43 1 4.7016 -1.3581 -2.8670 44 1 5.3888 -4.0225 -1.5427 45 1 3.8101 -3.5464 -2.2162 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571406222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:59 Heat of formation + Delta-G solvation = -36.727059 kcal Electronic energy + Delta-G solvation = -25803.931299 eV Core-core repulsion = 22332.289882 eV Total energy + Delta-G solvation = -3471.641416 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.94279 -40.14471 -38.68206 -36.83803 -35.73260 -34.03265 -32.32808 -30.91112 -29.80292 -28.14814 -27.17918 -26.17028 -24.31993 -24.15002 -22.65782 -22.42480 -21.01396 -19.73230 -18.99973 -18.42489 -18.07272 -17.50669 -16.55458 -16.42169 -16.04068 -15.55405 -15.27229 -15.24384 -15.12517 -14.78873 -14.71964 -14.47366 -14.23009 -14.09312 -13.91933 -13.47182 -13.16706 -13.09963 -13.02306 -12.74924 -12.55480 -12.50986 -12.34336 -12.28018 -12.19216 -11.91761 -11.78067 -11.42798 -11.26930 -11.05583 -10.87563 -10.77040 -10.52361 -10.41052 -9.88950 -9.74832 -8.15809 -6.24987 -0.38060 0.28995 0.62859 1.21350 1.40939 1.42425 1.53339 1.54258 1.96402 2.43233 3.14522 3.18257 3.44310 3.76135 3.80102 3.91563 4.00446 4.06095 4.07253 4.13784 4.28256 4.32865 4.42302 4.44491 4.59902 4.66885 4.73249 4.80870 4.83393 4.84035 4.86987 4.91169 5.03352 5.05456 5.19632 5.24584 5.25431 5.29306 5.34124 5.47542 5.56584 5.79663 5.89367 6.19394 6.30028 6.47941 6.88309 6.91450 7.43798 8.96279 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014661 B = 0.003590 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.430346 B = 7797.794117 C = 8187.406429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.026 4.026 3 C -0.144 4.144 4 C -0.218 4.218 5 S 0.281 5.719 6 C -0.006 4.006 7 N -0.471 5.471 8 C -0.007 4.007 9 C 0.597 3.403 10 O -0.572 6.572 11 N -0.591 5.591 12 C 0.123 3.877 13 C -0.108 4.108 14 C -0.073 4.073 15 C 0.035 3.965 16 C -0.526 4.526 17 H 0.065 0.935 18 C 0.000 4.000 19 N -0.936 5.936 20 Si 0.957 3.043 21 H -0.259 1.259 22 H -0.283 1.283 23 H -0.281 1.281 24 C -0.119 4.119 25 C 0.117 3.883 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.241 0.759 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.063 0.937 39 H -0.011 1.011 40 H -0.013 1.013 41 H 0.261 0.739 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.416 -1.293 15.990 22.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.201 4.201 4 C -0.341 4.341 5 S 0.538 5.462 6 C -0.304 4.304 7 N -0.185 5.185 8 C -0.142 4.142 9 C 0.382 3.618 10 O -0.451 6.451 11 N -0.322 5.322 12 C 0.001 3.999 13 C -0.147 4.147 14 C -0.091 4.091 15 C -0.002 4.002 16 C -0.564 4.564 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.577 5.577 20 Si 0.783 3.217 21 H -0.183 1.183 22 H -0.209 1.209 23 H -0.207 1.207 24 C -0.158 4.158 25 C -0.005 4.005 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.257 0.743 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.007 0.993 40 H 0.006 0.994 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.102 0.898 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.935 -1.210 16.189 23.460 hybrid contribution 1.391 -0.259 -1.116 1.803 sum -15.544 -1.469 15.073 21.701 Atomic orbital electron populations 1.21869 0.91767 1.02104 1.03884 1.19712 0.97548 0.96119 0.91351 1.21928 1.01040 0.93258 1.03901 1.25731 1.04773 0.99522 1.04115 1.82367 1.48448 1.23455 0.91927 1.29032 1.01195 0.95581 1.04545 1.67017 1.22066 1.31743 0.97717 1.19961 1.05213 0.96533 0.92533 1.17531 0.81810 0.79177 0.83275 1.90751 1.50216 1.43450 1.60712 1.48139 1.07934 1.53717 1.22424 1.21688 0.89356 0.95160 0.93730 1.21685 0.99652 0.97059 0.96259 1.21043 0.95318 0.97534 0.95240 1.18996 0.94131 0.93097 0.94021 1.21672 1.08334 1.23267 1.03086 0.91709 1.25912 1.01334 0.96965 0.95554 1.70113 1.39845 1.32051 1.15665 0.85508 0.79135 0.78024 0.79064 1.18276 1.20894 1.20721 1.21908 0.97170 0.98103 0.98572 1.21705 1.00541 0.95361 0.82887 0.90354 0.90381 0.93514 0.92342 0.93385 0.90585 0.90219 0.74281 0.89927 0.90139 0.90512 0.93410 0.91878 0.99296 0.99445 0.93051 0.90289 0.93150 0.89755 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.16 71.98 0.66 -1.82 16 2 C -0.03 -0.59 3.19 -11.54 -0.04 -0.63 16 3 C -0.14 -2.72 9.05 71.98 0.65 -2.06 16 4 C -0.22 -5.05 5.03 24.99 0.13 -4.93 16 5 S 0.28 3.99 22.45 -56.49 -1.27 2.73 16 6 C -0.01 -0.09 12.17 130.71 1.59 1.50 16 7 N -0.47 -12.08 10.30 -193.03 -1.99 -14.07 16 8 C -0.01 -0.21 4.60 40.55 0.19 -0.03 16 9 C 0.60 20.41 6.40 86.62 0.55 20.97 16 10 O -0.57 -22.75 16.54 -4.14 -0.07 -22.82 16 11 N -0.59 -18.96 2.98 -823.78 -2.45 -21.41 16 12 C 0.12 3.68 6.32 86.22 0.55 4.23 16 13 C -0.11 -3.82 5.17 30.53 0.16 -3.66 16 14 C -0.07 -2.84 2.10 -10.77 -0.02 -2.86 16 15 C 0.03 1.76 4.45 29.85 0.13 1.89 16 16 C -0.53 -28.49 8.39 25.60 0.21 -28.27 16 17 H 0.06 3.33 7.06 -2.91 -0.02 3.31 16 18 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 19 N -0.94 -56.22 13.29 21.44 0.28 -55.93 16 20 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C -0.12 -4.08 5.36 30.67 0.16 -3.91 16 25 C 0.12 3.61 6.42 86.36 0.55 4.16 16 26 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.67 7.17 -2.39 -0.02 1.66 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.08 1.13 7.84 -2.39 -0.02 1.12 16 33 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 34 H 0.08 2.35 6.04 -2.39 -0.01 2.33 16 35 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.08 2.84 6.91 -2.39 -0.02 2.82 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 39 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 40 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.80 16 44 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.09 2.70 7.03 -2.39 -0.02 2.68 16 Total: -1.00 -71.80 373.95 3.44 -68.35 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: 0.97 Total: 12.88 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 5.94 Total: -14.97 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -4.16 Total: -91.42 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.07 Total: -22.82 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.27 Total: 2.73 kcal Total: -71.80 3.44 -68.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571406222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.624 kcal (2) G-P(sol) polarization free energy of solvation -71.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds