Wall clock time and date at job start Tue Mar 31 2020 14:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 C 1.53006 * 109.46993 * 183.87111 * 3 2 1 5 5 H 1.09000 * 109.46961 * 181.81030 * 4 3 2 6 6 N 1.46896 * 109.47375 * 61.80664 * 4 3 2 7 7 C 1.46900 * 110.99942 * 82.90903 * 6 4 3 8 8 C 1.50703 * 109.47307 * 176.88875 * 7 6 4 9 9 H 1.08000 * 119.99922 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00061 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00122 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46867 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46771 * 120.00003 * 12 10 8 15 15 H 1.48497 * 109.47260 * 240.00097 * 12 10 8 16 16 C 1.50702 * 109.46965 * 301.80779 * 4 3 2 17 17 O 1.21278 * 119.99996 * 120.00546 * 16 4 3 18 18 N 1.34774 * 119.99744 * 299.99958 * 16 4 3 19 19 C 1.47071 * 120.86394 * 179.97438 * 18 16 4 20 20 C 1.53187 * 108.57526 * 115.09981 * 19 18 16 21 21 C 1.51395 * 109.07198 * 45.54801 * 20 19 18 22 22 S 1.75900 * 125.06646 * 161.97285 * 21 20 19 23 23 C 1.75720 * 91.11486 * 179.58869 * 22 21 20 24 24 C 1.32922 * 109.58733 * 0.07649 * 23 22 21 25 25 C 1.34647 * 125.09276 * 341.74332 * 21 20 19 26 26 C 1.46972 * 120.87119 * 359.97438 * 18 16 4 27 27 H 1.09002 * 109.47574 * 59.99836 * 1 2 3 28 28 H 1.09004 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47324 * 300.00443 * 1 2 3 30 30 H 1.09004 * 109.47324 * 239.99557 * 2 1 3 31 31 H 1.09002 * 109.47574 * 120.00164 * 2 1 3 32 32 H 1.08994 * 109.47464 * 63.87324 * 3 2 1 33 33 H 1.09003 * 109.47320 * 303.86662 * 3 2 1 34 34 H 1.00898 * 111.00204 * 206.85954 * 6 4 3 35 35 H 1.08994 * 109.47424 * 296.89503 * 7 6 4 36 36 H 1.09007 * 109.46989 * 56.89662 * 7 6 4 37 37 H 0.96996 * 120.00063 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.61852 * 355.37623 * 19 18 16 39 39 H 1.09003 * 109.62220 * 234.82539 * 19 18 16 40 40 H 1.09001 * 109.54111 * 285.67081 * 20 19 18 41 41 H 1.09004 * 109.60556 * 165.46850 * 20 19 18 42 42 H 1.08003 * 125.20772 * 180.09990 * 23 22 21 43 43 H 1.08007 * 122.17107 * 180.09270 * 24 23 22 44 44 H 1.08999 * 109.79940 * 105.55308 * 26 18 16 45 45 H 1.09002 * 109.79036 * 344.70145 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5669 1.4435 -0.0974 5 1 3.9323 2.4699 -0.0650 6 7 3.9774 0.8172 -1.3611 7 6 3.9220 1.7807 -2.4686 8 6 4.4215 1.1252 -3.7303 9 1 4.7471 0.0956 -3.7115 10 6 4.4618 1.8395 -4.9089 11 7 4.0649 3.0932 -4.9320 12 14 5.0802 1.0267 -6.4730 13 1 5.4639 -0.3782 -6.1824 14 1 4.0058 1.0441 -7.4979 15 1 6.2620 1.7679 -6.9821 16 6 4.1445 0.6680 1.0585 17 8 4.8306 -0.3101 0.8500 18 7 3.8986 1.0615 2.3238 19 6 4.4521 0.3185 3.4660 20 6 5.4402 1.2258 4.2057 21 6 4.8202 2.5962 4.3775 22 16 5.3602 3.8128 5.5275 23 6 4.1210 4.9312 4.9785 24 6 3.4040 4.3634 4.0140 25 6 3.7760 3.0677 3.6700 26 6 3.0704 2.2442 2.5984 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7344 1.9359 0.9226 33 1 1.6211 1.9760 -0.8533 34 1 4.8975 0.4108 -1.2812 35 1 2.8930 2.1097 -2.6129 36 1 4.5490 2.6409 -2.2335 37 1 4.0936 3.5958 -5.7611 38 1 4.9699 -0.5711 3.1076 39 1 3.6457 0.0293 4.1400 40 1 6.3598 1.3118 3.6268 41 1 5.6640 0.8016 5.1845 42 1 3.9659 5.9275 5.3654 43 1 2.5858 4.8749 3.5286 44 1 2.0896 1.9327 2.9578 45 1 2.9604 2.8366 1.6901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573479621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:34 Heat of formation + Delta-G solvation = -2.719953 kcal Electronic energy + Delta-G solvation = -25534.655860 eV Core-core repulsion = 22064.489102 eV Total energy + Delta-G solvation = -3470.166758 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.52446 -38.48875 -36.13049 -35.47444 -33.67730 -32.45276 -32.08308 -29.74164 -28.84228 -26.22788 -25.98842 -24.23407 -23.53305 -22.26087 -21.79306 -20.42060 -19.01179 -18.48509 -17.46290 -16.79051 -16.24318 -16.00119 -15.63121 -15.02089 -14.93606 -14.63651 -14.47135 -13.89858 -13.66606 -13.60487 -13.31029 -13.10585 -12.84214 -12.67571 -12.54436 -12.25367 -12.10831 -11.96220 -11.81787 -11.52329 -11.39925 -11.21609 -10.95836 -10.87990 -10.81325 -10.63168 -10.39274 -10.16371 -9.97569 -9.40590 -9.09891 -8.83049 -8.74861 -8.52161 -8.47675 -7.31325 -6.02701 -4.03644 0.76758 1.38131 1.75966 2.42580 2.84444 2.92730 3.32996 3.40222 3.46637 4.39687 4.45459 4.49103 4.72521 4.77153 4.99942 5.02009 5.08870 5.13851 5.21733 5.25882 5.34007 5.34741 5.41924 5.46303 5.52806 5.65910 5.73210 5.80305 5.82683 5.96201 5.98728 6.04991 6.16380 6.24851 6.26422 6.40511 6.43161 6.67152 6.91046 7.18683 7.37068 7.43734 7.80031 8.11532 8.32953 8.39582 8.62429 9.06288 9.61273 11.08615 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003197 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.155753 B = 8756.677206 C = 9267.105846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.110 4.110 4 C 0.069 3.931 5 H 0.058 0.942 6 N -0.668 5.668 7 C 0.195 3.805 8 C -0.512 4.512 9 H 0.064 0.936 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.898 3.102 13 H -0.271 1.271 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.526 3.474 17 O -0.526 6.526 18 N -0.617 5.617 19 C 0.118 3.882 20 C -0.065 4.065 21 C -0.165 4.165 22 S 0.089 5.911 23 C -0.214 4.214 24 C -0.120 4.120 25 C -0.126 4.126 26 C 0.171 3.829 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.343 0.657 35 H 0.031 0.969 36 H -0.014 1.014 37 H 0.260 0.740 38 H 0.102 0.898 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.165 0.835 43 H 0.143 0.857 44 H 0.085 0.915 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.366 1.752 23.356 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.148 4.148 4 C -0.044 4.044 5 H 0.076 0.924 6 N -0.302 5.302 7 C 0.069 3.931 8 C -0.550 4.550 9 H 0.082 0.918 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.726 3.274 13 H -0.196 1.196 14 H -0.210 1.210 15 H -0.211 1.211 16 C 0.315 3.685 17 O -0.401 6.401 18 N -0.352 5.352 19 C -0.007 4.007 20 C -0.105 4.105 21 C -0.283 4.283 22 S 0.355 5.645 23 C -0.349 4.349 24 C -0.151 4.151 25 C -0.139 4.139 26 C 0.046 3.954 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.049 0.951 36 H 0.003 0.997 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.183 0.817 43 H 0.160 0.840 44 H 0.102 0.898 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.464 1.204 24.081 24.237 hybrid contribution -0.031 0.606 -1.613 1.723 sum -2.495 1.810 22.468 22.679 Atomic orbital electron populations 1.21762 0.96664 1.00991 1.01159 1.21409 0.94556 0.96532 1.02909 1.21802 0.92863 0.98262 1.01917 1.21518 0.96747 0.96142 0.90040 0.92416 1.60656 1.34061 1.34793 1.00683 1.19641 0.96853 0.89177 0.87448 1.21214 1.42244 0.98572 0.92991 0.91790 1.24966 0.95557 0.94848 0.99128 1.69969 1.48003 1.08636 1.27204 0.86433 0.78347 0.79641 0.82972 1.19586 1.21014 1.21130 1.20996 0.79320 0.84807 0.83340 1.90660 1.38483 1.26985 1.83985 1.48039 1.52374 1.29003 1.05796 1.21515 0.96645 0.95092 0.87415 1.20692 0.98949 0.89445 1.01410 1.24697 1.01488 1.00535 1.01561 1.84180 1.34956 1.06794 1.38564 1.25331 1.01419 1.04037 1.04156 1.19936 1.02026 0.94368 0.98754 1.19923 0.98265 0.95296 1.00430 1.20830 0.92537 0.85202 0.96832 0.92635 0.93299 0.93689 0.89544 0.93466 0.92052 0.90368 0.83655 0.95121 0.99675 0.93012 0.87996 0.90918 0.89689 0.89502 0.81741 0.83980 0.89764 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.15 0.37 -1.52 16 2 C -0.12 -1.78 5.49 -26.74 -0.15 -1.93 16 3 C -0.11 -1.66 4.62 -26.73 -0.12 -1.79 16 4 C 0.07 1.22 1.91 -68.86 -0.13 1.09 16 5 H 0.06 1.03 7.21 -51.93 -0.37 0.66 16 6 N -0.67 -14.70 5.42 -109.22 -0.59 -15.29 16 7 C 0.20 5.07 5.26 -4.97 -0.03 5.04 16 8 C -0.51 -14.60 9.28 -34.44 -0.32 -14.92 16 9 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 12 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 C 0.53 8.75 5.85 -10.99 -0.06 8.68 16 17 O -0.53 -10.42 15.12 5.56 0.08 -10.33 16 18 N -0.62 -7.93 2.92 -173.06 -0.51 -8.44 16 19 C 0.12 1.27 6.40 -3.63 -0.02 1.25 16 20 C -0.06 -0.63 6.43 -27.45 -0.18 -0.81 16 21 C -0.17 -1.74 6.39 -35.24 -0.23 -1.97 16 22 S 0.09 0.82 23.31 -107.50 -2.51 -1.68 16 23 C -0.21 -1.86 11.20 28.89 0.32 -1.54 16 24 C -0.12 -1.12 10.00 -41.09 -0.41 -1.53 16 25 C -0.13 -1.34 5.86 -104.68 -0.61 -1.95 16 26 C 0.17 1.82 4.92 -4.06 -0.02 1.80 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 1.60 7.54 -51.93 -0.39 1.21 16 31 H 0.05 0.71 7.31 -51.93 -0.38 0.33 16 32 H 0.06 0.73 4.86 -51.93 -0.25 0.47 16 33 H 0.08 1.31 7.33 -51.93 -0.38 0.93 16 34 H 0.34 7.96 7.47 -39.29 -0.29 7.67 16 35 H 0.03 0.84 7.35 -51.93 -0.38 0.45 16 36 H -0.01 -0.40 7.99 -51.93 -0.41 -0.81 16 37 H 0.26 7.29 8.31 -40.82 -0.34 6.96 16 38 H 0.10 1.22 7.02 -51.93 -0.36 0.85 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.17 1.05 8.06 -52.48 -0.42 0.62 16 43 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 44 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 45 H 0.11 1.15 5.07 -51.93 -0.26 0.89 16 LS Contribution 368.06 15.07 5.55 5.55 Total: -1.00 -32.00 368.06 -10.78 -42.77 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.83 Total: 5.04 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.69 Total: -8.57 kcal Atomic # 7 Polarization: -49.33 SS G_CDS: -0.36 Total: -49.69 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.00 -10.78 -42.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573479621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.054 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds