Wall clock time and date at job start Tue Mar 31 2020 14:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 C 1.53006 * 109.46993 * 183.87111 * 3 2 1 5 5 H 1.09000 * 109.46961 * 181.81030 * 4 3 2 6 6 N 1.46896 * 109.47375 * 61.80664 * 4 3 2 7 7 C 1.46900 * 110.99942 * 82.90903 * 6 4 3 8 8 C 1.50703 * 109.47307 * 176.88875 * 7 6 4 9 9 H 1.08000 * 119.99922 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00061 * 179.97438 * 8 7 6 11 11 N 1.31520 * 120.00122 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99979 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46867 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46771 * 120.00003 * 12 10 8 15 15 H 1.48497 * 109.47260 * 240.00097 * 12 10 8 16 16 C 1.50702 * 109.46965 * 301.80779 * 4 3 2 17 17 O 1.21278 * 119.99996 * 120.00546 * 16 4 3 18 18 N 1.34774 * 119.99744 * 299.99958 * 16 4 3 19 19 C 1.47071 * 120.86394 * 179.97438 * 18 16 4 20 20 C 1.53187 * 108.57526 * 115.09981 * 19 18 16 21 21 C 1.51395 * 109.07198 * 45.54801 * 20 19 18 22 22 S 1.75900 * 125.06646 * 161.97285 * 21 20 19 23 23 C 1.75720 * 91.11486 * 179.58869 * 22 21 20 24 24 C 1.32922 * 109.58733 * 0.07649 * 23 22 21 25 25 C 1.34647 * 125.09276 * 341.74332 * 21 20 19 26 26 C 1.46972 * 120.87119 * 359.97438 * 18 16 4 27 27 H 1.09002 * 109.47574 * 59.99836 * 1 2 3 28 28 H 1.09004 * 109.47320 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47324 * 300.00443 * 1 2 3 30 30 H 1.09004 * 109.47324 * 239.99557 * 2 1 3 31 31 H 1.09002 * 109.47574 * 120.00164 * 2 1 3 32 32 H 1.08994 * 109.47464 * 63.87324 * 3 2 1 33 33 H 1.09003 * 109.47320 * 303.86662 * 3 2 1 34 34 H 1.00898 * 111.00204 * 206.85954 * 6 4 3 35 35 H 1.08994 * 109.47424 * 296.89503 * 7 6 4 36 36 H 1.09007 * 109.46989 * 56.89662 * 7 6 4 37 37 H 0.96996 * 120.00063 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.61852 * 355.37623 * 19 18 16 39 39 H 1.09003 * 109.62220 * 234.82539 * 19 18 16 40 40 H 1.09001 * 109.54111 * 285.67081 * 20 19 18 41 41 H 1.09004 * 109.60556 * 165.46850 * 20 19 18 42 42 H 1.08003 * 125.20772 * 180.09990 * 23 22 21 43 43 H 1.08007 * 122.17107 * 180.09270 * 24 23 22 44 44 H 1.08999 * 109.79940 * 105.55308 * 26 18 16 45 45 H 1.09002 * 109.79036 * 344.70145 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5669 1.4435 -0.0974 5 1 3.9323 2.4699 -0.0650 6 7 3.9774 0.8172 -1.3611 7 6 3.9220 1.7807 -2.4686 8 6 4.4215 1.1252 -3.7303 9 1 4.7471 0.0956 -3.7115 10 6 4.4618 1.8395 -4.9089 11 7 4.0649 3.0932 -4.9320 12 14 5.0802 1.0267 -6.4730 13 1 5.4639 -0.3782 -6.1824 14 1 4.0058 1.0441 -7.4979 15 1 6.2620 1.7679 -6.9821 16 6 4.1445 0.6680 1.0585 17 8 4.8306 -0.3101 0.8500 18 7 3.8986 1.0615 2.3238 19 6 4.4521 0.3185 3.4660 20 6 5.4402 1.2258 4.2057 21 6 4.8202 2.5962 4.3775 22 16 5.3602 3.8128 5.5275 23 6 4.1210 4.9312 4.9785 24 6 3.4040 4.3634 4.0140 25 6 3.7760 3.0677 3.6700 26 6 3.0704 2.2442 2.5984 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7344 1.9359 0.9226 33 1 1.6211 1.9760 -0.8533 34 1 4.8975 0.4108 -1.2812 35 1 2.8930 2.1097 -2.6129 36 1 4.5490 2.6409 -2.2335 37 1 4.0936 3.5958 -5.7611 38 1 4.9699 -0.5711 3.1076 39 1 3.6457 0.0293 4.1400 40 1 6.3598 1.3118 3.6268 41 1 5.6640 0.8016 5.1845 42 1 3.9659 5.9275 5.3654 43 1 2.5858 4.8749 3.5286 44 1 2.0896 1.9327 2.9578 45 1 2.9604 2.8366 1.6901 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573479621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:33 Heat of formation + Delta-G solvation = -22.280818 kcal Electronic energy + Delta-G solvation = -25535.504083 eV Core-core repulsion = 22064.489102 eV Total energy + Delta-G solvation = -3471.014980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.68664 -39.47884 -37.58819 -36.49875 -35.43156 -33.95934 -33.38122 -30.65013 -30.30749 -27.86229 -27.19771 -25.27986 -24.67525 -23.66806 -23.09044 -21.72114 -20.22814 -19.29517 -18.86709 -18.21196 -17.44530 -17.30765 -16.91187 -16.55485 -16.12874 -15.84918 -15.61600 -15.17742 -14.99992 -14.65462 -14.37784 -14.24991 -14.16805 -14.01782 -13.86626 -13.52060 -13.50512 -13.05721 -12.82162 -12.75785 -12.70592 -12.61262 -12.43681 -12.21491 -12.12721 -12.05113 -11.75004 -11.67129 -11.38780 -11.30438 -10.73359 -10.64609 -9.84122 -9.50378 -9.26821 -9.15409 -8.23572 -6.33229 0.04236 0.66628 1.05887 1.40075 1.40534 1.52881 1.54782 1.69532 1.84251 2.40097 3.10092 3.38702 3.49952 3.68388 3.74173 3.89192 3.96896 4.11891 4.21493 4.24246 4.31454 4.38370 4.47791 4.51568 4.55388 4.72900 4.75732 4.78329 4.82804 4.94312 4.96690 5.03118 5.10344 5.11587 5.26581 5.29422 5.32684 5.42236 5.45751 5.53469 5.59909 5.63668 5.99911 6.21607 6.40216 6.65164 6.85250 7.07393 7.36998 8.88165 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014873 B = 0.003197 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.155753 B = 8756.677206 C = 9267.105846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.103 4.103 4 C 0.066 3.934 5 H 0.056 0.944 6 N -0.668 5.668 7 C 0.215 3.785 8 C -0.537 4.537 9 H 0.057 0.943 10 C 0.007 3.993 11 N -0.929 5.929 12 Si 0.969 3.031 13 H -0.268 1.268 14 H -0.275 1.275 15 H -0.277 1.277 16 C 0.529 3.471 17 O -0.566 6.566 18 N -0.607 5.607 19 C 0.115 3.885 20 C -0.060 4.060 21 C -0.187 4.187 22 S 0.097 5.903 23 C -0.212 4.212 24 C -0.132 4.132 25 C -0.134 4.134 26 C 0.165 3.835 27 H 0.047 0.953 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.050 0.950 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.334 0.666 35 H 0.014 0.986 36 H -0.040 1.040 37 H 0.266 0.734 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.188 0.812 43 H 0.161 0.839 44 H 0.112 0.888 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 2.184 24.951 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.141 4.141 4 C -0.048 4.048 5 H 0.073 0.927 6 N -0.301 5.301 7 C 0.087 3.913 8 C -0.575 4.575 9 H 0.075 0.925 10 C -0.192 4.192 11 N -0.569 5.569 12 Si 0.794 3.206 13 H -0.192 1.192 14 H -0.200 1.200 15 H -0.202 1.202 16 C 0.318 3.682 17 O -0.444 6.444 18 N -0.340 5.340 19 C -0.008 4.008 20 C -0.100 4.100 21 C -0.304 4.304 22 S 0.363 5.637 23 C -0.347 4.347 24 C -0.162 4.162 25 C -0.148 4.148 26 C 0.041 3.959 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.032 0.968 36 H -0.023 1.023 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.117 0.883 40 H 0.087 0.913 41 H 0.129 0.871 42 H 0.206 0.794 43 H 0.178 0.822 44 H 0.130 0.870 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.440 1.657 25.731 26.012 hybrid contribution 0.270 0.546 -1.984 2.076 sum -3.171 2.203 23.746 24.058 Atomic orbital electron populations 1.21711 0.94292 1.01869 1.02097 1.21314 0.96587 0.95931 1.01093 1.21812 0.90613 0.98535 1.03153 1.21621 0.98609 0.95747 0.88814 0.92691 1.60540 1.33370 1.34151 1.02050 1.19252 0.94884 0.88784 0.88345 1.21525 1.42965 0.98530 0.94490 0.92480 1.25848 0.95419 0.95404 1.02514 1.70070 1.48538 1.09903 1.28396 0.85341 0.78068 0.78651 0.78588 1.19230 1.20020 1.20212 1.20650 0.79041 0.84211 0.84294 1.90642 1.40389 1.28702 1.84714 1.48011 1.51676 1.29369 1.04949 1.21697 0.97675 0.94598 0.86851 1.20641 0.97778 0.89342 1.02216 1.24854 1.01960 1.01174 1.02441 1.84157 1.35078 1.06525 1.37943 1.25694 1.00548 1.04824 1.03622 1.20134 1.02898 0.93995 0.99220 1.20012 0.98534 0.95922 1.00297 1.21045 0.93393 0.84367 0.97080 0.93416 0.92526 0.90972 0.93521 0.93142 0.87964 0.92212 0.84689 0.96820 1.02251 0.92541 0.89447 0.88303 0.91291 0.87061 0.79448 0.82203 0.87004 0.87966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.91 71.98 0.71 -2.68 16 2 C -0.11 -3.38 5.49 30.59 0.17 -3.21 16 3 C -0.10 -3.09 4.62 30.60 0.14 -2.94 16 4 C 0.07 2.37 1.91 44.17 0.08 2.46 16 5 H 0.06 2.03 7.21 -2.39 -0.02 2.02 16 6 N -0.67 -30.90 5.42 -499.45 -2.71 -33.61 16 7 C 0.21 11.69 5.26 85.56 0.45 12.14 16 8 C -0.54 -31.63 9.28 25.60 0.24 -31.39 16 9 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 10 C 0.01 0.39 5.46 84.65 0.46 0.85 16 11 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 12 Si 0.97 45.38 29.54 68.60 2.03 47.40 16 13 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 16 C 0.53 17.81 5.85 87.66 0.51 18.32 16 17 O -0.57 -23.16 15.12 -3.02 -0.05 -23.21 16 18 N -0.61 -14.98 2.92 -819.83 -2.39 -17.37 16 19 C 0.12 2.34 6.40 86.33 0.55 2.90 16 20 C -0.06 -1.09 6.43 30.13 0.19 -0.90 16 21 C -0.19 -3.60 6.39 25.08 0.16 -3.44 16 22 S 0.10 1.59 23.31 -56.49 -1.32 0.28 16 23 C -0.21 -3.12 11.20 66.65 0.75 -2.37 16 24 C -0.13 -2.12 10.00 21.31 0.21 -1.91 16 25 C -0.13 -2.56 5.86 -19.91 -0.12 -2.67 16 26 C 0.17 3.15 4.92 86.11 0.42 3.58 16 27 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.78 7.54 -2.39 -0.02 1.76 16 31 H 0.05 1.48 7.31 -2.39 -0.02 1.47 16 32 H 0.10 2.19 4.86 -2.39 -0.01 2.18 16 33 H 0.06 2.03 7.33 -2.39 -0.02 2.01 16 34 H 0.33 16.38 7.47 -89.70 -0.67 15.71 16 35 H 0.01 0.79 7.35 -2.39 -0.02 0.77 16 36 H -0.04 -2.34 7.99 -2.38 -0.02 -2.36 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.09 2.07 7.02 -2.39 -0.02 2.05 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.19 1.78 8.06 -2.91 -0.02 1.76 16 43 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.11 1.57 7.90 -2.39 -0.02 1.55 16 45 H 0.10 2.04 5.07 -2.39 -0.01 2.03 16 Total: -1.00 -71.26 368.06 1.12 -70.14 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.33 Total: 23.40 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 4.94 Total: -11.27 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -4.81 Total: -106.74 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.05 Total: -23.21 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.40 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -1.32 Total: 0.28 kcal Total: -71.26 1.12 -70.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573479621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.858 kcal (2) G-P(sol) polarization free energy of solvation -71.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds