Wall clock time and date at job start Tue Mar 31 2020 13:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.33634 * 122.75408 * 124.99773 * 3 2 1 5 5 S 1.76199 * 107.92635 * 179.97438 * 4 3 2 6 6 C 1.70972 * 90.28189 * 0.02562 * 5 4 3 7 7 C 1.50704 * 124.91663 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47102 * 269.97562 * 7 6 5 9 9 O 1.21283 * 119.99574 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99900 * 179.97438 * 8 7 6 11 11 C 1.46923 * 120.63254 * 359.72316 * 10 8 7 12 12 C 1.53626 * 108.54511 * 126.36485 * 11 10 8 13 13 C 1.53035 * 109.23923 * 54.85675 * 12 11 10 14 14 C 1.53006 * 109.46130 * 178.48886 * 13 12 11 15 15 C 1.50700 * 109.47061 * 295.06962 * 14 13 12 16 16 H 1.08002 * 119.99856 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00073 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99862 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99873 * 359.97438 * 17 15 14 20 20 H 1.48497 * 109.46811 * 89.99931 * 19 17 15 21 21 H 1.48500 * 109.46883 * 210.00180 * 19 17 15 22 22 H 1.48502 * 109.47308 * 330.00044 * 19 17 15 23 23 C 1.53035 * 109.53997 * 298.50853 * 13 12 11 24 24 C 1.46927 * 120.62830 * 179.97438 * 10 8 7 25 25 N 1.29025 * 110.17046 * 359.73364 * 6 5 4 26 26 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46801 * 300.00442 * 1 2 3 28 28 H 1.09001 * 109.46998 * 60.00038 * 1 2 3 29 29 H 1.09001 * 109.47002 * 119.99404 * 2 1 3 30 30 H 1.08993 * 109.46955 * 239.99842 * 2 1 3 31 31 H 1.08004 * 126.03751 * 359.97438 * 4 3 2 32 32 H 1.08995 * 109.46890 * 29.96921 * 7 6 5 33 33 H 1.08996 * 109.47112 * 149.97745 * 7 6 5 34 34 H 1.09000 * 109.58477 * 246.20103 * 11 10 8 35 35 H 1.09001 * 109.58584 * 6.61932 * 11 10 8 36 36 H 1.08994 * 109.63665 * 294.86529 * 12 11 10 37 37 H 1.09003 * 109.45246 * 174.73643 * 12 11 10 38 38 H 1.08999 * 109.45285 * 58.52663 * 13 12 11 39 39 H 1.09000 * 109.46659 * 55.06532 * 14 13 12 40 40 H 1.08994 * 109.47674 * 175.06634 * 14 13 12 41 41 H 0.97001 * 120.00129 * 180.02562 * 18 17 15 42 42 H 1.08998 * 109.50326 * 301.41594 * 23 13 12 43 43 H 1.09005 * 109.52954 * 181.33201 * 23 13 12 44 44 H 1.08997 * 109.58654 * 353.37262 * 24 10 8 45 45 H 1.08993 * 109.58695 * 113.66014 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8811 1.8876 0.9206 5 16 3.2057 3.5795 0.5508 6 6 2.1672 3.4912 -0.8045 7 6 1.8751 4.6334 -1.7432 8 6 0.6804 5.4030 -1.2414 9 8 0.1211 5.0576 -0.2222 10 7 0.2337 6.4750 -1.9253 11 6 0.9044 6.9091 -3.1582 12 6 -0.1441 7.0058 -4.2769 13 6 -1.2816 7.9239 -3.8239 14 6 -2.3106 8.0538 -4.9488 15 6 -1.6805 8.7490 -6.1280 16 1 -0.6495 9.0669 -6.0799 17 6 -2.4204 8.9794 -7.2685 18 7 -1.8703 9.5857 -8.2978 19 14 -4.2035 8.4291 -7.3520 20 1 -5.0820 9.5209 -6.8608 21 1 -4.5559 8.1045 -8.7576 22 1 -4.3900 7.2242 -6.5042 23 6 -1.9544 7.3316 -2.5835 24 6 -0.9301 7.2349 -1.4489 25 7 1.6747 2.3034 -0.9110 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5137 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.2951 1.3268 1.7457 32 1 2.7398 5.2952 -1.7904 33 1 1.6629 4.2412 -2.7378 34 1 1.3647 7.8844 -2.9998 35 1 1.6688 6.1825 -3.4337 36 1 -0.5413 6.0141 -4.4933 37 1 0.3191 7.4160 -5.1742 38 1 -0.8798 8.9083 -3.5839 39 1 -2.6474 7.0617 -5.2493 40 1 -3.1624 8.6355 -4.5967 41 1 -2.3909 9.7481 -9.1000 42 1 -2.3345 6.3368 -2.8157 43 1 -2.7796 7.9735 -2.2749 44 1 -1.3765 6.7233 -0.5963 45 1 -0.6162 8.2354 -1.1514 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577852816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:19:32 Heat of formation + Delta-G solvation = -13.167273 kcal Electronic energy + Delta-G solvation = -24642.772364 eV Core-core repulsion = 21172.152576 eV Total energy + Delta-G solvation = -3470.619787 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.46241 -39.75356 -37.46388 -34.20299 -34.09627 -32.35869 -31.67736 -30.61071 -28.96749 -28.29962 -25.11690 -24.46678 -23.16871 -22.64469 -21.41860 -20.00025 -19.75322 -18.80574 -17.68075 -17.22626 -16.71592 -16.06522 -15.58548 -15.34122 -14.86815 -14.37602 -14.15174 -14.07889 -13.94028 -13.66732 -13.50158 -13.22335 -13.01324 -12.96738 -12.61832 -12.33817 -12.15196 -12.10146 -11.97689 -11.49188 -11.43959 -11.17756 -11.11190 -10.93395 -10.68980 -10.36783 -10.04630 -9.81259 -9.76051 -9.73285 -9.53667 -9.47196 -9.09535 -8.86572 -8.55874 -8.47912 -6.06990 -4.04476 0.52278 1.19858 1.57235 2.56180 2.59354 3.07766 3.29073 3.37245 3.41005 3.79881 4.42305 4.43497 4.57678 4.76148 4.90000 4.97399 5.01036 5.08526 5.23282 5.25603 5.28262 5.32852 5.38400 5.39942 5.42171 5.58031 5.64722 5.65963 5.86817 5.87349 5.95931 5.97184 6.15095 6.23829 6.25325 6.39476 6.56385 6.76272 6.82720 6.92378 7.22330 7.40179 7.44741 7.60734 7.77285 8.14264 8.50437 8.97220 9.56393 11.06148 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.002582 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.324160 B =10843.469214 C =11293.971199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.046 4.046 3 C 0.074 3.926 4 C -0.266 4.266 5 S 0.127 5.873 6 C 0.078 3.922 7 C -0.069 4.069 8 C 0.521 3.479 9 O -0.540 6.540 10 N -0.603 5.603 11 C 0.100 3.900 12 C -0.121 4.121 13 C -0.072 4.072 14 C -0.010 4.010 15 C -0.516 4.516 16 H 0.074 0.926 17 C 0.066 3.934 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.266 1.266 23 C -0.132 4.132 24 C 0.114 3.886 25 N -0.460 5.460 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.209 -14.202 17.845 25.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.058 4.058 4 C -0.405 4.405 5 S 0.383 5.617 6 C -0.201 4.201 7 C -0.112 4.112 8 C 0.307 3.693 9 O -0.417 6.417 10 N -0.337 5.337 11 C -0.022 4.022 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.047 4.047 15 C -0.554 4.554 16 H 0.092 0.908 17 C -0.135 4.135 18 N -0.543 5.543 19 Si 0.705 3.295 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.191 1.191 23 C -0.171 4.171 24 C -0.008 4.008 25 N -0.174 5.174 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.192 0.808 32 H 0.133 0.867 33 H 0.144 0.856 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.150 -13.626 18.218 25.335 hybrid contribution -1.279 -0.949 -0.299 1.621 sum 9.870 -14.575 17.919 25.118 Atomic orbital electron populations 1.21677 0.94114 1.01542 1.02961 1.20130 0.96861 0.88852 1.02794 1.20259 0.96768 0.97489 0.91317 1.26800 1.08659 0.97743 1.07286 1.83861 1.43954 1.09145 1.24734 1.26124 0.98978 0.95789 0.99226 1.20322 0.98778 0.92931 0.99175 1.20104 0.84948 0.80277 0.84013 1.90706 1.58773 1.67449 1.24800 1.48136 1.31119 1.28705 1.25715 1.22104 0.95710 1.00311 0.84068 1.21991 0.95985 1.00555 0.97346 1.21001 0.96176 0.97633 0.94244 1.19620 0.94422 0.96697 0.93963 1.21125 0.99779 1.37344 0.97158 0.90828 1.25023 0.98128 0.94670 0.95670 1.69907 1.36929 1.42641 1.04831 0.86820 0.85816 0.79733 0.77151 1.20388 1.21487 1.19053 1.22058 0.97616 1.01714 0.95668 1.21644 0.85957 0.95455 0.97744 1.65973 1.23532 1.00673 1.27218 0.92345 0.92811 0.91601 0.90469 0.90216 0.80765 0.86674 0.85577 0.90960 0.90301 0.92169 0.89048 0.91689 0.96663 0.97041 0.92782 0.92037 0.91088 0.89633 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.82 37.16 0.36 -1.02 16 2 C -0.05 -0.41 6.43 -27.88 -0.18 -0.59 16 3 C 0.07 0.85 6.07 -84.22 -0.51 0.34 16 4 C -0.27 -2.63 11.07 29.12 0.32 -2.30 16 5 S 0.13 1.31 23.18 -107.50 -2.49 -1.18 16 6 C 0.08 0.96 5.88 -13.45 -0.08 0.88 16 7 C -0.07 -0.75 4.63 -29.03 -0.13 -0.88 16 8 C 0.52 7.33 7.69 -10.98 -0.08 7.24 16 9 O -0.54 -9.46 15.45 5.55 0.09 -9.37 16 10 N -0.60 -8.14 2.97 -172.53 -0.51 -8.65 16 11 C 0.10 1.22 6.37 -3.49 -0.02 1.20 16 12 C -0.12 -1.93 5.21 -26.39 -0.14 -2.07 16 13 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 14 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 15 C -0.52 -13.84 8.94 -34.44 -0.31 -14.14 16 16 H 0.07 2.09 7.30 -52.49 -0.38 1.70 16 17 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 18 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 19 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.28 6.54 56.52 0.37 -5.91 16 23 C -0.13 -2.05 5.36 -26.63 -0.14 -2.19 16 24 C 0.11 1.59 6.43 -3.73 -0.02 1.57 16 25 N -0.46 -6.25 10.35 -8.06 -0.08 -6.33 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 29 H 0.08 0.50 8.03 -51.93 -0.42 0.09 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.17 1.20 8.06 -52.48 -0.42 0.78 16 32 H 0.12 0.88 7.93 -51.93 -0.41 0.47 16 33 H 0.13 1.26 7.70 -51.93 -0.40 0.86 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.62 6.91 -51.93 -0.36 1.26 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 40 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 372.41 15.07 5.61 5.61 Total: -1.00 -33.08 372.41 -9.83 -42.91 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.22 Total: -1.37 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: -1.32 Total: -11.99 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.18 Total: -41.34 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.49 Total: -1.18 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.08 -9.83 -42.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577852816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.745 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds