Wall clock time and date at job start Tue Mar 31 2020 13:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47089 * 2 1 4 4 C 1.50699 * 109.46946 * 239.99525 * 2 1 3 5 5 N 1.28648 * 124.72086 * 239.99972 * 4 2 1 6 6 C 1.33554 * 115.76590 * 180.02562 * 5 4 2 7 7 C 1.47271 * 123.14075 * 180.02562 * 6 5 4 8 8 O 1.21633 * 119.99800 * 171.35744 * 7 6 5 9 9 N 1.34777 * 120.00006 * 351.35584 * 7 6 5 10 10 C 1.46919 * 120.62995 * 1.57844 * 9 7 6 11 11 C 1.52760 * 109.00560 * 233.58243 * 10 9 7 12 12 C 1.53035 * 109.38712 * 305.58601 * 11 10 9 13 13 C 1.52995 * 109.45279 * 181.25574 * 12 11 10 14 14 C 1.50693 * 109.46999 * 64.93931 * 13 12 11 15 15 H 1.07999 * 120.00640 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99876 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00519 * 179.97438 * 16 14 13 18 18 Si 1.86807 * 120.00119 * 0.02562 * 16 14 13 19 19 H 1.48495 * 109.47159 * 89.99724 * 18 16 14 20 20 H 1.48498 * 109.46834 * 209.99831 * 18 16 14 21 21 H 1.48499 * 109.46702 * 329.99732 * 18 16 14 22 22 C 1.53040 * 109.53595 * 61.23927 * 12 11 10 23 23 C 1.46923 * 120.62831 * 181.85522 * 9 7 6 24 24 C 1.35208 * 113.72147 * 359.97438 * 6 5 4 25 25 S 1.70776 * 124.71816 * 59.70271 * 4 2 1 26 26 H 1.09003 * 109.47146 * 60.00160 * 1 2 3 27 27 H 1.08998 * 109.47455 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47171 * 300.00153 * 1 2 3 29 29 H 1.09000 * 109.46643 * 119.99809 * 2 1 3 30 30 H 1.08995 * 109.46942 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46996 * 299.99932 * 3 2 1 32 32 H 1.08999 * 109.47692 * 59.99717 * 3 2 1 33 33 H 1.09005 * 109.59008 * 353.41720 * 10 9 7 34 34 H 1.08998 * 109.58999 * 113.84152 * 10 9 7 35 35 H 1.09010 * 109.56442 * 185.54820 * 11 10 9 36 36 H 1.09005 * 109.36145 * 65.50091 * 11 10 9 37 37 H 1.09007 * 109.45982 * 301.22588 * 12 11 10 38 38 H 1.09000 * 109.46943 * 184.94290 * 13 12 11 39 39 H 1.09002 * 109.46751 * 304.93934 * 13 12 11 40 40 H 0.96994 * 120.00436 * 180.02562 * 17 16 14 41 41 H 1.09000 * 109.50222 * 178.68519 * 22 12 11 42 42 H 1.08999 * 109.52481 * 58.60613 * 22 12 11 43 43 H 1.09006 * 109.58475 * 246.15504 * 23 9 7 44 44 H 1.09001 * 109.58749 * 6.43808 * 23 9 7 45 45 H 1.08003 * 125.59006 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.7750 -1.7609 -1.2181 6 6 3.1172 -2.2440 -2.4153 7 6 3.9610 -3.4382 -2.5904 8 8 4.1092 -3.9212 -3.6968 9 7 4.5691 -3.9959 -1.5247 10 6 4.3720 -3.4446 -0.1772 11 6 5.7363 -3.1586 0.4477 12 6 6.5902 -4.4279 0.4063 13 6 7.9456 -4.1518 1.0600 14 6 7.7458 -3.8516 2.5231 15 1 6.7514 -3.8567 2.9446 16 6 8.8323 -3.5692 3.3236 17 7 8.6580 -3.3067 4.6004 18 14 10.5521 -3.5582 2.5942 19 1 10.8729 -2.1938 2.1037 20 1 11.5339 -3.9534 3.6358 21 1 10.6163 -4.5186 1.4635 22 6 6.8029 -4.8543 -1.0481 23 6 5.4463 -5.1629 -1.6892 24 6 2.6156 -1.5350 -3.4516 25 16 1.6889 -0.2376 -2.8350 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 3.7997 -2.5191 -0.2410 34 1 3.8355 -4.1667 0.4383 35 1 5.6048 -2.8422 1.4826 36 1 6.2327 -2.3677 -0.1146 37 1 6.0816 -5.2256 0.9478 38 1 8.5858 -5.0275 0.9528 39 1 8.4156 -3.2965 0.5744 40 1 9.4223 -3.1077 5.1635 41 1 7.4305 -5.7450 -1.0780 42 1 7.2895 -4.0479 -1.5967 43 1 4.9991 -6.0281 -1.1996 44 1 5.5804 -5.3725 -2.7504 45 1 2.7711 -1.7550 -4.4975 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578444972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:32 Heat of formation + Delta-G solvation = -19.333616 kcal Electronic energy + Delta-G solvation = -25328.821466 eV Core-core repulsion = 21857.934286 eV Total energy + Delta-G solvation = -3470.887180 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.97610 -40.20476 -38.76811 -36.45505 -35.71250 -34.09168 -32.18356 -31.19719 -30.34809 -28.03775 -27.40088 -26.12368 -24.27542 -24.07773 -22.64714 -21.47991 -21.15554 -20.13446 -19.31128 -18.81373 -17.44094 -17.15616 -16.74610 -16.54542 -16.34726 -15.49743 -15.39424 -15.17742 -15.15228 -14.93152 -14.56313 -14.30384 -14.25250 -14.17792 -13.73631 -13.60646 -13.11969 -13.05777 -13.00784 -12.87297 -12.57653 -12.43789 -12.22066 -12.13316 -12.02437 -11.85846 -11.75500 -11.47613 -11.35281 -11.25328 -10.96917 -10.74197 -10.72271 -10.00816 -9.94690 -9.60445 -8.26323 -6.28024 -0.54003 0.21496 0.54865 0.81120 1.34300 1.35927 1.47528 1.98441 2.19893 2.36712 2.80347 3.08861 3.52919 3.82047 3.95673 4.01219 4.07000 4.08660 4.16745 4.17519 4.22520 4.40246 4.43800 4.57793 4.61822 4.71249 4.79166 4.83526 4.91419 4.92677 4.96719 5.00861 5.09324 5.16504 5.18149 5.30352 5.32986 5.35992 5.37626 5.45796 5.63346 5.71343 5.77163 6.24266 6.33808 6.45021 6.78600 6.99025 7.35513 8.90069 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.003561 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.371626 B = 7861.109788 C = 9284.566743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.026 4.026 3 C -0.148 4.148 4 C 0.018 3.982 5 N -0.461 5.461 6 C -0.012 4.012 7 C 0.584 3.416 8 O -0.576 6.576 9 N -0.587 5.587 10 C 0.062 3.938 11 C -0.107 4.107 12 C -0.072 4.072 13 C -0.005 4.005 14 C -0.517 4.517 15 H 0.039 0.961 16 C 0.006 3.994 17 N -0.951 5.951 18 Si 0.942 3.058 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.250 1.250 22 C -0.121 4.121 23 C 0.112 3.888 24 C -0.238 4.238 25 S 0.309 5.691 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.087 0.913 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.056 0.944 38 H 0.017 0.983 39 H 0.010 0.990 40 H 0.264 0.736 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.779 9.799 -15.806 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.048 4.048 3 C -0.206 4.206 4 C -0.259 4.259 5 N -0.176 5.176 6 C -0.146 4.146 7 C 0.371 3.629 8 O -0.457 6.457 9 N -0.317 5.317 10 C -0.060 4.060 11 C -0.145 4.145 12 C -0.090 4.090 13 C -0.043 4.043 14 C -0.555 4.555 15 H 0.058 0.942 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.767 3.233 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.174 1.174 22 C -0.159 4.159 23 C -0.010 4.010 24 C -0.381 4.381 25 S 0.567 5.433 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.111 0.889 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.182 0.818 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.028 0.972 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -19.032 10.141 -16.170 26.954 hybrid contribution 1.933 -1.223 0.407 2.324 sum -17.098 8.918 -15.763 24.907 Atomic orbital electron populations 1.21943 0.91257 1.02793 1.04251 1.20032 0.97497 0.95918 0.91376 1.21964 1.01238 0.93110 1.04279 1.27974 0.99129 0.96450 1.02361 1.66472 1.14237 1.12100 1.24808 1.20208 1.05492 1.00359 0.88552 1.17518 0.79285 0.82354 0.83768 1.90735 1.65223 1.64416 1.25360 1.48073 1.45220 1.30361 1.08020 1.23267 0.98002 1.04335 0.80424 1.21642 0.95335 0.97263 1.00287 1.20961 0.96374 0.97226 0.94471 1.19564 0.94758 0.95860 0.94077 1.21429 0.93923 1.46141 0.94000 0.94246 1.25911 1.03519 0.94598 0.95005 1.70054 1.32240 1.50167 1.06722 0.85772 0.79359 0.79421 0.78781 1.19606 1.21027 1.17368 1.21932 0.96478 1.02045 0.95410 1.21719 0.89850 0.87361 1.02093 1.26868 1.03754 1.01416 1.06020 1.82329 1.41638 1.22552 0.96732 0.90855 0.92672 0.89431 0.88913 0.93226 0.90736 0.89434 0.81758 0.92397 0.92030 0.93735 0.92548 0.96426 0.97214 0.92679 0.89584 0.92643 0.90340 0.89287 0.78632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.08 71.98 0.65 -0.70 16 2 C -0.03 -0.37 3.34 -11.54 -0.04 -0.41 16 3 C -0.15 -1.64 9.09 71.98 0.65 -0.99 16 4 C 0.02 0.34 6.00 88.57 0.53 0.88 16 5 N -0.46 -11.85 6.65 -180.83 -1.20 -13.06 16 6 C -0.01 -0.34 6.54 40.56 0.27 -0.07 16 7 C 0.58 19.50 7.67 86.62 0.66 20.17 16 8 O -0.58 -21.35 16.15 -4.14 -0.07 -21.42 16 9 N -0.59 -19.43 2.98 -823.78 -2.45 -21.88 16 10 C 0.06 2.07 6.19 86.22 0.53 2.60 16 11 C -0.11 -4.15 5.17 30.53 0.16 -4.00 16 12 C -0.07 -2.87 2.10 -10.77 -0.02 -2.89 16 13 C -0.01 -0.25 3.52 29.84 0.10 -0.15 16 14 C -0.52 -29.75 8.94 25.60 0.23 -29.52 16 15 H 0.04 2.47 7.30 -2.91 -0.02 2.45 16 16 C 0.01 0.36 5.47 84.66 0.46 0.82 16 17 N -0.95 -59.84 13.96 21.45 0.30 -59.54 16 18 Si 0.94 45.15 27.47 68.60 1.88 47.04 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 21 H -0.25 -11.24 6.54 99.48 0.65 -10.58 16 22 C -0.12 -4.02 5.36 30.67 0.16 -3.85 16 23 C 0.11 3.47 6.43 86.36 0.56 4.03 16 24 C -0.24 -4.96 10.62 67.12 0.71 -4.25 16 25 S 0.31 4.11 22.23 -56.49 -1.26 2.86 16 26 H 0.07 0.47 7.91 -2.39 -0.02 0.45 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.58 7.92 -2.39 -0.02 0.56 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.17 5.25 3.57 -81.38 -0.29 4.96 16 34 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 2.68 6.91 -2.38 -0.02 2.66 16 36 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 39 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 40 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 41 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 44 H 0.09 2.73 7.01 -2.39 -0.02 2.72 16 45 H 0.20 3.64 8.04 -2.91 -0.02 3.62 16 Total: -1.00 -72.65 367.02 3.47 -69.18 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.64 Total: 15.16 kcal Atomic # 6 Polarization: -23.96 SS G_CDS: 5.63 Total: -18.34 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -3.36 Total: -94.48 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.42 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.04 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.26 Total: 2.86 kcal Total: -72.65 3.47 -69.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578444972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.844 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds