Wall clock time and date at job start Tue Mar 31 2020 14:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81393 * 102.99859 * 2 1 4 4 C 1.50696 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.38307 * 119.96735 * 270.27505 * 4 3 2 6 6 C 1.38256 * 120.14615 * 180.27345 * 5 4 3 7 7 C 1.38136 * 120.06570 * 359.45137 * 6 5 4 8 8 C 1.38850 * 119.93133 * 0.27286 * 7 6 5 9 9 N 1.39940 * 120.06888 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00320 * 33.26895 * 9 8 7 11 11 O 1.21583 * 119.99749 * 5.31983 * 10 9 8 12 12 N 1.34771 * 120.00056 * 185.31467 * 10 9 8 13 13 C 1.46494 * 120.00040 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47332 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47181 * 299.99638 * 14 13 12 16 16 C 1.53000 * 109.47722 * 59.99503 * 14 13 12 17 17 C 1.50701 * 109.47199 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00115 * 359.97438 * 17 14 13 19 19 C 1.37884 * 120.00151 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99738 * 359.97438 * 19 17 14 21 21 Si 1.86789 * 120.00207 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.47323 * 89.99583 * 21 19 17 23 23 H 1.48495 * 109.47490 * 209.99325 * 21 19 17 24 24 H 1.48505 * 109.47144 * 329.99812 * 21 19 17 25 25 C 1.38095 * 119.96873 * 90.00032 * 4 3 2 26 26 H 1.08996 * 109.47620 * 60.00088 * 1 2 3 27 27 H 1.09006 * 109.46980 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47143 * 299.99540 * 1 2 3 29 29 H 1.08999 * 109.47470 * 60.00108 * 3 2 1 30 30 H 1.09003 * 109.47535 * 299.99877 * 3 2 1 31 31 H 1.08007 * 119.92474 * 0.02562 * 5 4 3 32 32 H 1.07994 * 119.96816 * 179.72236 * 6 5 4 33 33 H 1.07999 * 120.03255 * 180.25040 * 7 6 5 34 34 H 0.97001 * 119.99829 * 213.27182 * 9 8 7 35 35 H 0.97008 * 120.00234 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.47319 * 299.99838 * 13 12 10 37 37 H 1.08998 * 109.47678 * 60.00037 * 13 12 10 38 38 H 1.09007 * 109.46674 * 59.99836 * 15 14 13 39 39 H 1.08989 * 109.47365 * 179.97438 * 15 14 13 40 40 H 1.09005 * 109.47165 * 300.00322 * 15 14 13 41 41 H 1.09003 * 109.46824 * 60.00089 * 16 14 13 42 42 H 1.08989 * 109.47655 * 180.02562 * 16 14 13 43 43 H 1.09007 * 109.47022 * 300.00708 * 16 14 13 44 44 H 0.97001 * 119.99827 * 180.02562 * 20 19 17 45 45 H 1.07997 * 120.03143 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4070 2.0094 1.1972 6 6 5.7801 2.1709 1.2010 7 6 6.4709 2.2495 0.0074 8 6 5.7843 2.1718 -1.1969 9 7 6.4812 2.2516 -2.4078 10 6 7.7283 1.7492 -2.5020 11 8 8.2112 1.1415 -1.5662 12 7 8.4400 1.9202 -3.6337 13 6 9.7953 1.3737 -3.7363 14 6 10.3765 1.7061 -5.1120 15 6 9.4947 1.0906 -6.2005 16 6 10.4240 3.2247 -5.2923 17 6 11.7705 1.1433 -5.2177 18 1 12.1992 0.6029 -4.3867 19 6 12.4990 1.3191 -6.3751 20 7 11.9772 1.9775 -7.3869 21 14 14.2271 0.6221 -6.5060 22 1 14.1643 -0.7583 -7.0500 23 1 15.0375 1.4748 -7.4122 24 1 14.8534 0.5955 -5.1597 25 6 4.4043 2.0152 -1.1972 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 3.8696 1.9433 2.1318 32 1 6.3136 2.2313 2.1380 33 1 7.5440 2.3716 0.0110 34 1 6.0667 2.6685 -3.1794 35 1 8.0549 2.4053 -4.3803 36 1 10.4237 1.8124 -2.9612 37 1 9.7616 0.2918 -3.6075 38 1 8.4863 1.4973 -6.1241 39 1 9.9085 1.3278 -7.1805 40 1 9.4609 0.0087 -6.0720 41 1 11.0522 3.6631 -4.5169 42 1 10.8376 3.4614 -6.2725 43 1 9.4155 3.6314 -5.2160 44 1 12.4896 2.1009 -8.2013 45 1 3.8673 1.9549 -2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581236538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:48 Heat of formation + Delta-G solvation = -11.617151 kcal Electronic energy + Delta-G solvation = -24180.948793 eV Core-core repulsion = 20710.396223 eV Total energy + Delta-G solvation = -3470.552569 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.48509 -38.84175 -36.56850 -34.73038 -33.43121 -32.57432 -30.97637 -29.58878 -29.29780 -27.08704 -25.74860 -25.64193 -24.90426 -22.52025 -22.20259 -20.28962 -18.83183 -18.34990 -17.37189 -16.32365 -16.21654 -15.87041 -15.63767 -14.94815 -14.76941 -14.68574 -14.38435 -14.04172 -14.03074 -13.68584 -13.66528 -13.10737 -12.92928 -12.90209 -12.76565 -12.24717 -12.20903 -11.75161 -11.43850 -11.32848 -11.21683 -10.89290 -10.70231 -10.46329 -10.39344 -10.23804 -10.18143 -9.81770 -9.65610 -9.35192 -8.82835 -8.81214 -8.53792 -8.37442 -8.01891 -7.92599 -6.03657 -4.13550 0.83972 1.30670 1.77615 2.30378 2.87986 3.27982 3.35036 3.39279 3.39367 3.87773 4.35603 4.39549 4.52047 4.56921 4.75556 4.78342 4.93259 5.07232 5.16639 5.23314 5.30813 5.32745 5.49002 5.61967 5.85032 6.12134 6.29212 6.31353 6.32579 6.46831 6.48941 6.54610 6.74758 6.79682 6.85895 6.99262 7.00138 7.04885 7.20074 7.35004 7.53534 7.68373 7.98897 8.09360 8.28081 8.37761 8.82789 8.88688 9.52267 10.97819 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.002151 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.853654 B =13014.431619 C =13389.370672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.250 6.250 3 C -0.040 4.040 4 C -0.062 4.062 5 C -0.125 4.125 6 C -0.099 4.099 7 C -0.114 4.114 8 C 0.180 3.820 9 N -0.693 5.693 10 C 0.696 3.304 11 O -0.580 6.580 12 N -0.726 5.726 13 C 0.149 3.851 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.886 5.886 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C -0.134 4.134 26 H 0.075 0.925 27 H 0.100 0.900 28 H 0.075 0.925 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.139 0.861 34 H 0.405 0.595 35 H 0.395 0.605 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.005 0.995 39 H 0.085 0.915 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.085 0.915 43 H 0.005 0.995 44 H 0.260 0.740 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.566 3.247 12.105 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S -0.022 6.022 3 C -0.188 4.188 4 C -0.063 4.063 5 C -0.145 4.145 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.084 3.916 9 N -0.341 5.341 10 C 0.396 3.604 11 O -0.457 6.457 12 N -0.380 5.380 13 C 0.026 3.974 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.136 4.136 20 N -0.525 5.525 21 Si 0.722 3.278 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.157 4.157 26 H 0.094 0.906 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.157 0.843 34 H 0.240 0.760 35 H 0.230 0.770 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.104 0.896 43 H 0.024 0.976 44 H 0.070 0.930 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.333 1.847 12.682 24.035 hybrid contribution -0.339 1.012 -0.943 1.424 sum -20.672 2.859 11.738 23.943 Atomic orbital electron populations 1.23416 0.94994 1.06511 1.04757 1.87432 1.06229 1.10524 1.98000 1.22267 0.96031 0.94932 1.05534 1.18811 0.92541 1.01701 0.93295 1.20905 0.94394 1.02182 0.97060 1.21002 0.93798 0.99149 0.97856 1.21322 1.01447 0.99983 0.90786 1.17439 0.90391 0.98261 0.85471 1.42746 1.15899 1.62852 1.12566 1.16061 0.80250 0.79801 0.84260 1.90910 1.70245 1.46052 1.38513 1.45556 1.17923 1.59437 1.15049 1.21668 0.78111 0.97317 1.00307 1.18377 0.94698 0.93259 0.88174 1.21833 0.95134 0.98158 1.03702 1.21825 0.96423 0.97031 1.03503 1.20968 0.98166 1.34976 1.00237 0.92368 1.24885 0.98091 0.94952 0.95657 1.69803 1.37031 1.41068 1.04558 0.86556 0.84318 0.78897 0.78015 1.20705 1.21288 1.19885 1.20650 0.92621 1.04403 0.98055 0.90557 0.88098 0.90590 0.89178 0.89264 0.86064 0.85597 0.84293 0.76015 0.76955 0.92664 0.92676 0.97594 0.89585 0.95381 0.95393 0.89590 0.97581 0.93005 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 10.76 101.05 1.09 0.33 16 2 S -0.25 -2.39 22.36 -107.50 -2.40 -4.80 16 3 C -0.04 -0.32 6.06 36.00 0.22 -0.10 16 4 C -0.06 -0.64 5.14 -104.65 -0.54 -1.17 16 5 C -0.12 -1.30 9.70 -39.55 -0.38 -1.68 16 6 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 7 C -0.11 -1.61 8.66 -39.39 -0.34 -1.95 16 8 C 0.18 2.44 6.28 -83.69 -0.53 1.91 16 9 N -0.69 -9.36 5.35 -14.22 -0.08 -9.44 16 10 C 0.70 12.18 8.30 -86.92 -0.72 11.46 16 11 O -0.58 -12.22 14.03 5.29 0.07 -12.15 16 12 N -0.73 -12.66 4.96 -65.23 -0.32 -12.98 16 13 C 0.15 3.12 4.50 -4.05 -0.02 3.10 16 14 C 0.06 1.27 0.50 -155.66 -0.08 1.19 16 15 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 16 C -0.13 -2.87 8.08 37.16 0.30 -2.57 16 17 C -0.50 -13.08 8.01 -34.44 -0.28 -13.36 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.71 5.15 -17.82 -0.09 1.61 16 20 N -0.89 -23.38 9.35 55.43 0.52 -22.86 16 21 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 25 C -0.13 -1.52 9.62 -39.39 -0.38 -1.90 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.09 0.58 8.09 -51.92 -0.42 0.16 16 30 H 0.09 0.60 8.08 -51.92 -0.42 0.18 16 31 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 32 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.14 2.24 6.41 -52.49 -0.34 1.90 16 34 H 0.40 4.13 8.83 -40.82 -0.36 3.77 16 35 H 0.40 6.10 6.18 -40.82 -0.25 5.85 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 39 H 0.09 2.12 6.07 -51.94 -0.32 1.80 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.09 2.11 6.07 -51.94 -0.32 1.79 16 43 H 0.01 0.10 6.86 -51.93 -0.36 -0.25 16 44 H 0.26 6.63 8.31 -40.82 -0.34 6.30 16 45 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -29.68 376.47 -10.30 -39.98 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -6.90 Total: 8.24 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -1.84 Total: -7.29 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.12 Total: -45.28 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.40 Total: -4.80 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -29.68 -10.30 -39.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581236538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.364 kcal (2) G-P(sol) polarization free energy of solvation -29.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds