Wall clock time and date at job start Tue Mar 31 2020 14:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81393 * 102.99859 * 2 1 4 4 C 1.50696 * 109.47184 * 180.02562 * 3 2 1 5 5 C 1.38307 * 119.96735 * 270.27505 * 4 3 2 6 6 C 1.38256 * 120.14615 * 180.27345 * 5 4 3 7 7 C 1.38136 * 120.06570 * 359.45137 * 6 5 4 8 8 C 1.38850 * 119.93133 * 0.27286 * 7 6 5 9 9 N 1.39940 * 120.06888 * 179.97438 * 8 7 6 10 10 C 1.34782 * 120.00320 * 33.26895 * 9 8 7 11 11 O 1.21583 * 119.99749 * 5.31983 * 10 9 8 12 12 N 1.34771 * 120.00056 * 185.31467 * 10 9 8 13 13 C 1.46494 * 120.00040 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47332 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47181 * 299.99638 * 14 13 12 16 16 C 1.53000 * 109.47722 * 59.99503 * 14 13 12 17 17 C 1.50701 * 109.47199 * 180.02562 * 14 13 12 18 18 H 1.08000 * 120.00115 * 359.97438 * 17 14 13 19 19 C 1.37884 * 120.00151 * 180.02562 * 17 14 13 20 20 N 1.31515 * 119.99738 * 359.97438 * 19 17 14 21 21 Si 1.86789 * 120.00207 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.47323 * 89.99583 * 21 19 17 23 23 H 1.48495 * 109.47490 * 209.99325 * 21 19 17 24 24 H 1.48505 * 109.47144 * 329.99812 * 21 19 17 25 25 C 1.38095 * 119.96873 * 90.00032 * 4 3 2 26 26 H 1.08996 * 109.47620 * 60.00088 * 1 2 3 27 27 H 1.09006 * 109.46980 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47143 * 299.99540 * 1 2 3 29 29 H 1.08999 * 109.47470 * 60.00108 * 3 2 1 30 30 H 1.09003 * 109.47535 * 299.99877 * 3 2 1 31 31 H 1.08007 * 119.92474 * 0.02562 * 5 4 3 32 32 H 1.07994 * 119.96816 * 179.72236 * 6 5 4 33 33 H 1.07999 * 120.03255 * 180.25040 * 7 6 5 34 34 H 0.97001 * 119.99829 * 213.27182 * 9 8 7 35 35 H 0.97008 * 120.00234 * 0.02562 * 12 10 9 36 36 H 1.09003 * 109.47319 * 299.99838 * 13 12 10 37 37 H 1.08998 * 109.47678 * 60.00037 * 13 12 10 38 38 H 1.09007 * 109.46674 * 59.99836 * 15 14 13 39 39 H 1.08989 * 109.47365 * 179.97438 * 15 14 13 40 40 H 1.09005 * 109.47165 * 300.00322 * 15 14 13 41 41 H 1.09003 * 109.46824 * 60.00089 * 16 14 13 42 42 H 1.08989 * 109.47655 * 180.02562 * 16 14 13 43 43 H 1.09007 * 109.47022 * 300.00708 * 16 14 13 44 44 H 0.97001 * 119.99827 * 180.02562 * 20 19 17 45 45 H 1.07997 * 120.03143 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 3.7194 1.9373 -0.0006 5 6 4.4070 2.0094 1.1972 6 6 5.7801 2.1709 1.2010 7 6 6.4709 2.2495 0.0074 8 6 5.7843 2.1718 -1.1969 9 7 6.4812 2.2516 -2.4078 10 6 7.7283 1.7492 -2.5020 11 8 8.2112 1.1415 -1.5662 12 7 8.4400 1.9202 -3.6337 13 6 9.7953 1.3737 -3.7363 14 6 10.3765 1.7061 -5.1120 15 6 9.4947 1.0906 -6.2005 16 6 10.4240 3.2247 -5.2923 17 6 11.7705 1.1433 -5.2177 18 1 12.1992 0.6029 -4.3867 19 6 12.4990 1.3191 -6.3751 20 7 11.9772 1.9775 -7.3869 21 14 14.2271 0.6221 -6.5060 22 1 14.1643 -0.7583 -7.0500 23 1 15.0375 1.4748 -7.4122 24 1 14.8534 0.5955 -5.1597 25 6 4.4043 2.0152 -1.1972 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8031 2.2371 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 3.8696 1.9433 2.1318 32 1 6.3136 2.2313 2.1380 33 1 7.5440 2.3716 0.0110 34 1 6.0667 2.6685 -3.1794 35 1 8.0549 2.4053 -4.3803 36 1 10.4237 1.8124 -2.9612 37 1 9.7616 0.2918 -3.6075 38 1 8.4863 1.4973 -6.1241 39 1 9.9085 1.3278 -7.1805 40 1 9.4609 0.0087 -6.0720 41 1 11.0522 3.6631 -4.5169 42 1 10.8376 3.4614 -6.2725 43 1 9.4155 3.6314 -5.2160 44 1 12.4896 2.1009 -8.2013 45 1 3.8673 1.9549 -2.1323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581236538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:47 Heat of formation + Delta-G solvation = -27.706367 kcal Electronic energy + Delta-G solvation = -24181.646473 eV Core-core repulsion = 20710.396223 eV Total energy + Delta-G solvation = -3471.250250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70500 -39.96241 -38.23720 -35.93799 -35.08258 -33.50727 -32.70808 -30.61561 -29.80228 -27.85914 -27.55825 -27.45220 -26.67074 -23.53505 -23.28850 -21.51585 -20.60675 -19.67468 -18.43151 -17.78200 -17.21695 -17.06751 -16.75621 -16.62725 -16.13851 -15.94548 -15.29727 -15.09941 -14.90401 -14.73473 -14.69824 -14.46708 -14.35551 -14.01913 -13.79543 -13.40036 -13.24399 -13.10567 -13.05097 -12.68989 -12.63707 -12.59347 -12.26042 -12.19585 -12.13122 -11.49680 -11.46623 -11.26393 -11.10008 -10.95341 -10.70668 -10.39698 -10.02500 -9.69611 -9.01580 -8.66483 -8.02198 -6.17406 0.04847 0.37977 1.06912 1.42822 1.45677 1.53366 1.64076 1.72776 2.08069 2.46245 2.92700 3.21569 3.25373 3.64776 3.88899 4.13758 4.29948 4.37467 4.39030 4.39298 4.40926 4.51222 4.52581 4.61910 4.69247 4.72331 4.92945 4.97173 5.01925 5.05990 5.09545 5.20217 5.33182 5.35294 5.39673 5.55160 5.58777 5.61135 5.67695 5.68016 5.99709 6.08023 6.15613 6.21905 6.43780 6.86532 7.01175 7.48817 7.50318 8.96742 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026817 B = 0.002151 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.853654 B =13014.431619 C =13389.370672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.320 6.320 3 C -0.027 4.027 4 C -0.061 4.061 5 C -0.120 4.120 6 C -0.104 4.104 7 C -0.140 4.140 8 C 0.156 3.844 9 N -0.675 5.675 10 C 0.697 3.303 11 O -0.619 6.619 12 N -0.718 5.718 13 C 0.167 3.833 14 C 0.051 3.949 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.527 4.527 18 H 0.045 0.955 19 C 0.027 3.973 20 N -0.898 5.898 21 Si 0.945 3.055 22 H -0.280 1.280 23 H -0.283 1.283 24 H -0.276 1.276 25 C -0.130 4.130 26 H 0.087 0.913 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.141 0.859 33 H 0.110 0.890 34 H 0.422 0.578 35 H 0.408 0.592 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.017 0.983 41 H 0.018 0.982 42 H 0.062 0.938 43 H 0.037 0.963 44 H 0.260 0.740 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.415 3.868 12.562 27.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 S -0.092 6.092 3 C -0.174 4.174 4 C -0.063 4.063 5 C -0.140 4.140 6 C -0.123 4.123 7 C -0.162 4.162 8 C 0.061 3.939 9 N -0.324 5.324 10 C 0.397 3.603 11 O -0.499 6.499 12 N -0.373 5.373 13 C 0.042 3.958 14 C 0.051 3.949 15 C -0.178 4.178 16 C -0.178 4.178 17 C -0.565 4.565 18 H 0.063 0.937 19 C -0.173 4.173 20 N -0.537 5.537 21 Si 0.772 3.228 22 H -0.206 1.206 23 H -0.208 1.208 24 H -0.201 1.201 25 C -0.153 4.153 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.165 0.835 32 H 0.159 0.841 33 H 0.128 0.872 34 H 0.260 0.740 35 H 0.245 0.755 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.237 2.501 13.122 26.803 hybrid contribution 0.420 0.812 -0.998 1.354 sum -22.817 3.313 12.124 26.049 Atomic orbital electron populations 1.23436 0.91118 1.07274 1.06085 1.87675 1.10625 1.12709 1.98218 1.22260 0.94158 0.93489 1.07457 1.19144 0.94074 1.00224 0.92839 1.21228 0.93849 1.00620 0.98345 1.21209 0.94662 0.98764 0.97616 1.21258 1.00356 1.02183 0.92410 1.17641 0.91347 0.99996 0.84941 1.42447 1.14413 1.62068 1.13498 1.16135 0.81198 0.79520 0.83442 1.90890 1.71463 1.47806 1.39777 1.45211 1.16762 1.59605 1.15715 1.21188 0.79632 0.96188 0.98744 1.18372 0.93659 0.93689 0.89208 1.21675 0.96588 0.97607 1.01978 1.21663 0.97975 0.96444 1.01686 1.21251 0.99983 1.35296 1.00008 0.93712 1.25451 1.00858 0.95384 0.95562 1.69904 1.37791 1.41378 1.04636 0.85761 0.81042 0.78302 0.77704 1.20556 1.20829 1.20119 1.20857 0.91561 1.03391 0.99461 0.89356 0.87643 0.89096 0.87081 0.87568 0.83548 0.84089 0.87190 0.73986 0.75512 0.94277 0.94436 0.94375 0.91854 0.96362 0.96292 0.91872 0.94396 0.93034 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.76 113.37 1.22 0.25 16 2 S -0.32 -5.42 22.36 -56.49 -1.26 -6.69 16 3 C -0.03 -0.34 6.06 71.23 0.43 0.09 16 4 C -0.06 -1.11 5.14 -19.88 -0.10 -1.21 16 5 C -0.12 -2.23 9.70 22.29 0.22 -2.01 16 6 C -0.10 -2.34 10.04 22.25 0.22 -2.12 16 7 C -0.14 -4.04 8.66 22.39 0.19 -3.85 16 8 C 0.16 4.11 6.28 38.15 0.24 4.35 16 9 N -0.68 -17.70 5.35 -317.18 -1.70 -19.40 16 10 C 0.70 24.43 8.30 179.05 1.49 25.92 16 11 O -0.62 -26.93 14.03 -3.98 -0.06 -26.98 16 12 N -0.72 -24.68 4.96 -478.56 -2.37 -27.05 16 13 C 0.17 7.11 4.50 86.38 0.39 7.50 16 14 C 0.05 2.36 0.50 -52.93 -0.03 2.33 16 15 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 16 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 17 C -0.53 -27.79 8.01 25.60 0.21 -27.58 16 18 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 19 C 0.03 1.43 5.15 84.66 0.44 1.87 16 20 N -0.90 -47.63 9.35 21.45 0.20 -47.43 16 21 Si 0.94 42.68 29.54 68.60 2.03 44.71 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 C -0.13 -2.69 9.62 22.39 0.22 -2.47 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.11 0.96 8.09 -2.39 -0.02 0.95 16 30 H 0.11 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 33 H 0.11 3.77 6.41 -2.91 -0.02 3.75 16 34 H 0.42 7.82 8.83 -92.71 -0.82 7.00 16 35 H 0.41 11.83 6.18 -92.70 -0.57 11.26 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.04 1.38 6.86 -2.38 -0.02 1.36 16 39 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 40 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 41 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.06 3.08 6.07 -2.39 -0.01 3.07 16 43 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 44 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 45 H 0.14 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -65.77 376.47 2.74 -63.03 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -0.39 Total: 26.13 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: 6.29 Total: -6.32 kcal Atomic # 7 Polarization: -90.01 SS G_CDS: -3.87 Total: -93.88 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.06 Total: -26.98 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -5.42 SS G_CDS: -1.26 Total: -6.69 kcal Total: -65.77 2.74 -63.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581236538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.328 kcal (2) G-P(sol) polarization free energy of solvation -65.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds