Wall clock time and date at job start Tue Mar 31 2020 12:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33640 * 122.75207 * 2 1 4 4 S 1.76204 * 107.92560 * 179.76108 * 3 2 1 5 5 C 1.70981 * 90.28002 * 0.28406 * 4 3 2 6 6 C 1.50701 * 124.91232 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47150 * 164.69919 * 6 5 4 8 8 N 1.46498 * 109.47114 * 44.69600 * 6 5 4 9 9 C 1.34777 * 119.99828 * 154.72036 * 8 6 5 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00126 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 89.99798 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00313 * 19 17 15 22 22 H 1.48507 * 109.46904 * 330.00135 * 19 17 15 23 23 C 1.52997 * 109.47247 * 284.69634 * 6 5 4 24 24 C 1.53001 * 117.50076 * 248.62150 * 23 6 5 25 25 C 1.52996 * 117.50043 * 179.97438 * 23 6 5 26 26 N 1.29023 * 110.16711 * 359.71204 * 5 4 3 27 27 H 1.08996 * 109.46992 * 270.02132 * 1 2 3 28 28 H 1.09002 * 109.47067 * 30.02035 * 1 2 3 29 29 H 1.09005 * 109.47424 * 150.02327 * 1 2 3 30 30 H 1.07993 * 126.03426 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00384 * 335.00482 * 8 6 5 32 32 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 33 33 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 34 34 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 35 35 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 36 36 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 37 37 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 38 38 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 39 39 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 40 40 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 41 41 H 1.09003 * 115.55144 * 34.32960 * 23 6 5 42 42 H 1.09001 * 117.49901 * 0.02562 * 24 23 6 43 43 H 1.09004 * 117.49836 * 145.02257 * 24 23 6 44 44 H 1.09002 * 117.50324 * 214.98207 * 25 23 6 45 45 H 1.09000 * 117.50019 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5039 -0.9819 0.0007 6 6 4.4835 -2.1272 0.0020 7 1 3.9652 -3.0483 0.2685 8 7 5.5428 -1.8627 0.9787 9 6 6.2199 -2.8879 1.5327 10 8 5.9558 -4.0292 1.2187 11 6 7.3054 -2.6162 2.5422 12 6 7.9101 -3.9413 3.0100 13 6 9.0125 -3.6655 4.0344 14 6 9.6177 -4.9906 4.5018 15 6 10.7032 -4.7189 5.5113 16 1 10.9382 -3.7026 5.7911 17 6 11.3970 -5.7676 6.0768 18 7 12.3439 -5.5304 6.9581 19 14 10.9920 -7.5253 5.5912 20 1 11.8282 -7.9235 4.4304 21 1 11.2691 -8.4312 6.7348 22 1 9.5565 -7.6187 5.2223 23 6 5.0991 -2.2732 -1.3910 24 6 4.7266 -3.5164 -2.2013 25 6 6.1264 -3.3883 -1.5961 26 7 2.2199 -1.1083 0.0004 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.8392 2.1307 -0.0004 31 1 5.7541 -0.9499 1.2299 32 1 8.0824 -2.0042 2.0843 33 1 6.8828 -2.0874 3.3966 34 1 7.1333 -4.5538 3.4678 35 1 8.3328 -4.4697 2.1553 36 1 9.7893 -3.0533 3.5763 37 1 8.5903 -3.1369 4.8891 38 1 8.8412 -5.6032 4.9598 39 1 10.0402 -5.5187 3.6469 40 1 12.8317 -6.2683 7.3563 41 1 5.2510 -1.3425 -1.9378 42 1 4.0425 -4.2301 -1.7422 43 1 4.6332 -3.4038 -3.2815 44 1 6.9536 -3.1915 -2.2781 45 1 6.3640 -4.0177 -0.7384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588546451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:56 Heat of formation + Delta-G solvation = 11.139283 kcal Electronic energy + Delta-G solvation = -23935.187131 eV Core-core repulsion = 20465.621355 eV Total energy + Delta-G solvation = -3469.565776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.67441 -39.89168 -37.57421 -35.06260 -34.69481 -32.66455 -32.39502 -30.31186 -28.62882 -27.90477 -25.75846 -23.63733 -22.54089 -22.26812 -21.01526 -20.73589 -20.02502 -19.64663 -18.32646 -17.08485 -16.62430 -16.51006 -16.06263 -15.81600 -15.31481 -14.93715 -14.68515 -14.19880 -13.91303 -13.86192 -13.69398 -13.05807 -12.98069 -12.79985 -12.64458 -12.47851 -12.23630 -12.04729 -11.77903 -11.74286 -11.57197 -11.09779 -10.73804 -10.63759 -10.62202 -10.52588 -10.08524 -10.00633 -9.89029 -9.81758 -9.64288 -9.44635 -9.35277 -9.15291 -9.10540 -8.48413 -5.99581 -3.97020 0.19346 0.85194 1.25819 2.25652 2.54456 2.78124 3.36179 3.42528 3.43263 3.49239 3.81906 4.31990 4.49210 4.50990 4.64845 4.69675 4.76389 4.80778 4.86217 4.99658 5.14980 5.19142 5.22072 5.26865 5.30426 5.35405 5.44607 5.50952 5.71441 5.75172 5.78110 5.90390 6.02138 6.03400 6.13807 6.20431 6.41307 6.68440 6.82162 6.99602 7.20690 7.29623 7.39061 7.51864 7.85752 8.09050 8.59239 9.05417 9.63808 11.13865 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002204 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.390580 B =12703.320313 C =13265.727714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 C -0.260 4.260 4 S 0.129 5.871 5 C 0.050 3.950 6 C 0.253 3.747 7 H 0.118 0.882 8 N -0.732 5.732 9 C 0.521 3.479 10 O -0.527 6.527 11 C -0.138 4.138 12 C -0.106 4.106 13 C -0.103 4.103 14 C -0.015 4.015 15 C -0.519 4.519 16 H 0.071 0.929 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.264 1.264 23 C -0.174 4.174 24 C -0.164 4.164 25 C -0.172 4.172 26 N -0.458 5.458 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.179 0.821 31 H 0.398 0.602 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.015 0.985 39 H 0.011 0.989 40 H 0.262 0.738 41 H 0.104 0.896 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.725 16.028 -19.517 33.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.063 4.063 3 C -0.399 4.399 4 S 0.384 5.616 5 C -0.229 4.229 6 C 0.145 3.855 7 H 0.136 0.864 8 N -0.385 5.385 9 C 0.309 3.691 10 O -0.402 6.402 11 C -0.178 4.178 12 C -0.144 4.144 13 C -0.140 4.140 14 C -0.053 4.053 15 C -0.557 4.557 16 H 0.089 0.911 17 C -0.137 4.137 18 N -0.545 5.545 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.215 1.215 22 H -0.189 1.189 23 C -0.194 4.194 24 C -0.201 4.201 25 C -0.209 4.209 26 N -0.173 5.173 27 H 0.096 0.904 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.197 0.803 31 H 0.233 0.767 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.122 0.878 42 H 0.117 0.883 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.054 15.126 -19.596 33.154 hybrid contribution -0.954 -0.200 -0.116 0.982 sum -23.008 14.926 -19.712 33.775 Atomic orbital electron populations 1.20385 0.86782 1.03523 1.03212 1.20367 0.98453 0.86260 1.01251 1.26886 0.94918 1.04151 1.13991 1.83966 1.07598 1.02416 1.67621 1.26959 0.94193 0.97928 1.03844 1.18741 0.84608 0.94241 0.87929 0.86415 1.46222 1.37612 1.10217 1.44489 1.21092 0.82258 0.84532 0.81192 1.90650 1.66495 1.21449 1.61627 1.21798 0.96343 1.02103 0.97594 1.21488 0.98820 0.94167 0.99893 1.21476 0.95881 0.99994 0.96688 1.19576 0.96141 0.93362 0.96203 1.21181 1.16860 0.95085 1.22569 0.91120 1.25047 0.94716 0.99202 0.94706 1.69922 1.23500 1.31941 1.29160 0.86773 0.79578 0.84865 0.78070 1.20321 1.21481 1.18889 1.22546 1.06172 0.94895 0.95802 1.22946 0.99407 0.98778 0.99016 1.23346 0.92309 1.00802 1.04432 1.66042 1.04201 1.31827 1.15226 0.90411 0.90589 0.90374 0.80342 0.76701 0.88715 0.88850 0.91719 0.91674 0.92837 0.92844 0.96626 0.97044 0.92834 0.87753 0.88344 0.88757 0.88924 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.31 36.00 0.37 -0.09 16 2 C 0.07 0.59 6.74 -84.23 -0.57 0.02 16 3 C -0.26 -1.82 11.13 29.12 0.32 -1.49 16 4 S 0.13 0.93 22.27 -107.50 -2.39 -1.47 16 5 C 0.05 0.48 6.28 -13.46 -0.08 0.40 16 6 C 0.25 2.60 2.78 -69.08 -0.19 2.41 16 7 H 0.12 1.48 7.33 -51.93 -0.38 1.10 16 8 N -0.73 -7.16 5.04 -54.93 -0.28 -7.44 16 9 C 0.52 6.51 7.17 -10.98 -0.08 6.43 16 10 O -0.53 -8.33 13.02 5.55 0.07 -8.26 16 11 C -0.14 -1.66 5.70 -27.89 -0.16 -1.82 16 12 C -0.11 -1.71 4.50 -26.74 -0.12 -1.83 16 13 C -0.10 -1.99 5.15 -26.73 -0.14 -2.12 16 14 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 15 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 16 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 19 Si 0.88 22.35 27.47 -169.99 -4.67 17.68 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 23 C -0.17 -1.65 5.34 -90.62 -0.48 -2.13 16 24 C -0.16 -1.55 10.18 -26.71 -0.27 -1.83 16 25 C -0.17 -1.81 9.74 -26.71 -0.26 -2.07 16 26 N -0.46 -4.96 10.53 -8.06 -0.08 -5.05 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.28 8.12 -51.93 -0.42 -0.14 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 31 H 0.40 2.99 7.78 -40.82 -0.32 2.67 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 35 H 0.06 1.10 8.10 -51.92 -0.42 0.68 16 36 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 39 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 41 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 42 H 0.10 0.99 8.05 -51.93 -0.42 0.57 16 43 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.12 1.61 5.03 -51.93 -0.26 1.35 16 LS Contribution 382.12 15.07 5.76 5.76 Total: -1.00 -34.03 382.12 -10.24 -44.27 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.22 Total: 0.29 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: -2.20 Total: -18.18 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.41 Total: -40.09 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.07 Total: -8.26 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.67 Total: 17.68 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.39 Total: -1.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.03 -10.24 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588546451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.411 kcal (2) G-P(sol) polarization free energy of solvation -34.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds