Wall clock time and date at job start Tue Mar 31 2020 12:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33640 * 122.75207 * 2 1 4 4 S 1.76204 * 107.92560 * 179.76108 * 3 2 1 5 5 C 1.70981 * 90.28002 * 0.28406 * 4 3 2 6 6 C 1.50701 * 124.91232 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47150 * 164.69919 * 6 5 4 8 8 N 1.46498 * 109.47114 * 44.69600 * 6 5 4 9 9 C 1.34777 * 119.99828 * 154.72036 * 8 6 5 10 10 O 1.21283 * 120.00222 * 0.28168 * 9 8 6 11 11 C 1.50703 * 120.00290 * 180.27728 * 9 8 6 12 12 C 1.52990 * 109.47398 * 180.02562 * 11 9 8 13 13 C 1.52995 * 109.47353 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47600 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47646 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99463 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00445 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00126 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99943 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47483 * 89.99798 * 19 17 15 21 21 H 1.48499 * 109.47134 * 210.00313 * 19 17 15 22 22 H 1.48507 * 109.46904 * 330.00135 * 19 17 15 23 23 C 1.52997 * 109.47247 * 284.69634 * 6 5 4 24 24 C 1.53001 * 117.50076 * 248.62150 * 23 6 5 25 25 C 1.52996 * 117.50043 * 179.97438 * 23 6 5 26 26 N 1.29023 * 110.16711 * 359.71204 * 5 4 3 27 27 H 1.08996 * 109.46992 * 270.02132 * 1 2 3 28 28 H 1.09002 * 109.47067 * 30.02035 * 1 2 3 29 29 H 1.09005 * 109.47424 * 150.02327 * 1 2 3 30 30 H 1.07993 * 126.03426 * 359.97438 * 3 2 1 31 31 H 0.97001 * 120.00384 * 335.00482 * 8 6 5 32 32 H 1.08998 * 109.46954 * 300.00581 * 11 9 8 33 33 H 1.09002 * 109.46946 * 59.99717 * 11 9 8 34 34 H 1.08998 * 109.47508 * 300.00200 * 12 11 9 35 35 H 1.09011 * 109.47182 * 60.00188 * 12 11 9 36 36 H 1.08999 * 109.47616 * 300.00389 * 13 12 11 37 37 H 1.09003 * 109.47280 * 60.00024 * 13 12 11 38 38 H 1.08998 * 109.47382 * 300.00476 * 14 13 12 39 39 H 1.09005 * 109.46800 * 60.00677 * 14 13 12 40 40 H 0.97005 * 120.00032 * 179.97438 * 18 17 15 41 41 H 1.09003 * 115.55144 * 34.32960 * 23 6 5 42 42 H 1.09001 * 117.49901 * 0.02562 * 24 23 6 43 43 H 1.09004 * 117.49836 * 145.02257 * 24 23 6 44 44 H 1.09002 * 117.50324 * 214.98207 * 25 23 6 45 45 H 1.09000 * 117.50019 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1239 0.0000 4 16 3.9333 0.6731 0.0070 5 6 3.5039 -0.9819 0.0007 6 6 4.4835 -2.1272 0.0020 7 1 3.9652 -3.0483 0.2685 8 7 5.5428 -1.8627 0.9787 9 6 6.2199 -2.8879 1.5327 10 8 5.9558 -4.0292 1.2187 11 6 7.3054 -2.6162 2.5422 12 6 7.9101 -3.9413 3.0100 13 6 9.0125 -3.6655 4.0344 14 6 9.6177 -4.9906 4.5018 15 6 10.7032 -4.7189 5.5113 16 1 10.9382 -3.7026 5.7911 17 6 11.3970 -5.7676 6.0768 18 7 12.3439 -5.5304 6.9581 19 14 10.9920 -7.5253 5.5912 20 1 11.8282 -7.9235 4.4304 21 1 11.2691 -8.4312 6.7348 22 1 9.5565 -7.6187 5.2223 23 6 5.0991 -2.2732 -1.3910 24 6 4.7266 -3.5164 -2.2013 25 6 6.1264 -3.3883 -1.5961 26 7 2.2199 -1.1083 0.0004 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.8392 2.1307 -0.0004 31 1 5.7541 -0.9499 1.2299 32 1 8.0824 -2.0042 2.0843 33 1 6.8828 -2.0874 3.3966 34 1 7.1333 -4.5538 3.4678 35 1 8.3328 -4.4697 2.1553 36 1 9.7893 -3.0533 3.5763 37 1 8.5903 -3.1369 4.8891 38 1 8.8412 -5.6032 4.9598 39 1 10.0402 -5.5187 3.6469 40 1 12.8317 -6.2683 7.3563 41 1 5.2510 -1.3425 -1.9378 42 1 4.0425 -4.2301 -1.7422 43 1 4.6332 -3.4038 -3.2815 44 1 6.9536 -3.1915 -2.2781 45 1 6.3640 -4.0177 -0.7384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588546451.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:56 Heat of formation + Delta-G solvation = -10.233601 kcal Electronic energy + Delta-G solvation = -23936.113929 eV Core-core repulsion = 20465.621355 eV Total energy + Delta-G solvation = -3470.492574 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.46270 -40.67957 -38.43336 -36.63015 -35.57759 -34.58496 -33.15103 -31.87683 -29.51448 -28.51218 -27.32835 -24.39275 -23.82332 -23.26549 -21.90732 -21.78722 -21.52416 -20.38001 -18.98292 -18.84185 -17.92482 -17.40676 -17.00940 -16.62851 -16.32316 -16.14533 -15.71384 -15.51409 -14.99714 -14.89255 -14.63637 -14.41848 -13.83407 -13.72076 -13.56350 -13.55062 -13.49416 -13.33416 -12.98448 -12.85189 -12.42114 -12.30859 -12.28651 -12.03397 -11.74531 -11.50212 -11.42319 -11.37869 -11.31587 -11.24598 -10.80290 -10.74966 -10.72723 -10.49758 -10.22324 -9.72940 -8.28736 -6.31548 -0.41280 0.26930 0.67402 1.35361 1.36978 1.49704 1.56211 1.62682 1.97558 2.36618 2.71451 3.06690 3.07724 3.66707 3.71909 3.80802 4.00023 4.03245 4.07370 4.17875 4.19194 4.23649 4.34977 4.47682 4.64455 4.66406 4.75119 4.75834 4.78759 4.80130 4.87614 4.90747 4.96227 5.13457 5.16719 5.17991 5.21949 5.30576 5.32566 5.35165 5.62719 5.67933 5.70210 6.30660 6.38742 6.69555 6.76523 7.17346 7.33178 8.87749 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021010 B = 0.002204 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.390580 B =12703.320313 C =13265.727714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.043 3.957 3 C -0.252 4.252 4 S 0.174 5.826 5 C 0.022 3.978 6 C 0.257 3.743 7 H 0.087 0.913 8 N -0.716 5.716 9 C 0.522 3.478 10 O -0.565 6.565 11 C -0.131 4.131 12 C -0.096 4.096 13 C -0.094 4.094 14 C -0.017 4.017 15 C -0.529 4.529 16 H 0.037 0.963 17 C 0.002 3.998 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.252 1.252 23 C -0.165 4.165 24 C -0.163 4.163 25 C -0.180 4.180 26 N -0.490 5.490 27 H 0.081 0.919 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.209 0.791 31 H 0.412 0.588 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.013 0.987 39 H 0.014 0.986 40 H 0.266 0.734 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.981 17.712 -21.080 36.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.391 4.391 4 S 0.429 5.571 5 C -0.255 4.255 6 C 0.149 3.851 7 H 0.105 0.895 8 N -0.370 5.370 9 C 0.311 3.689 10 O -0.443 6.443 11 C -0.171 4.171 12 C -0.134 4.134 13 C -0.132 4.132 14 C -0.055 4.055 15 C -0.567 4.567 16 H 0.055 0.945 17 C -0.194 4.194 18 N -0.591 5.591 19 Si 0.771 3.229 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.176 1.176 23 C -0.185 4.185 24 C -0.201 4.201 25 C -0.217 4.217 26 N -0.206 5.206 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.226 0.774 31 H 0.249 0.751 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.031 0.969 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.139 0.861 42 H 0.103 0.897 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -23.321 16.851 -21.168 35.720 hybrid contribution -0.569 -0.594 0.406 0.917 sum -23.890 16.257 -20.762 35.582 Atomic orbital electron populations 1.20456 0.85339 1.04242 1.03679 1.20775 0.99637 0.86227 1.02244 1.27335 0.94784 1.05117 1.11828 1.83740 1.07389 0.99651 1.66337 1.26757 0.93979 0.99207 1.05588 1.18556 0.84673 0.93676 0.88230 0.89479 1.46016 1.36808 1.10385 1.43794 1.21133 0.82335 0.84340 0.81120 1.90652 1.67686 1.23085 1.62923 1.21704 0.96844 1.00106 0.98417 1.21274 0.97384 0.96329 0.98450 1.21337 0.96836 0.97329 0.97665 1.19579 0.94778 0.96137 0.94975 1.21549 1.18018 0.93702 1.23434 0.94459 1.26000 0.94589 1.04125 0.94708 1.70063 1.24902 1.33526 1.30654 0.85697 0.80037 0.79039 0.78123 1.19166 1.20838 1.17620 1.22569 1.05167 0.95303 0.95463 1.22988 0.98446 0.98623 1.00002 1.23246 0.93166 1.01291 1.04022 1.66033 1.05034 1.33647 1.15847 0.90037 0.88209 0.91331 0.77371 0.75108 0.86162 0.86725 0.93052 0.92539 0.92302 0.92595 0.96905 0.96801 0.92561 0.86071 0.89662 0.86883 0.87661 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.31 71.23 0.73 -0.05 16 2 C 0.04 0.67 6.74 41.52 0.28 0.95 16 3 C -0.25 -2.79 11.13 66.78 0.74 -2.04 16 4 S 0.17 2.03 22.27 -56.49 -1.26 0.78 16 5 C 0.02 0.41 6.28 88.52 0.56 0.97 16 6 C 0.26 5.20 2.78 44.24 0.12 5.32 16 7 H 0.09 2.31 7.33 -2.39 -0.02 2.29 16 8 N -0.72 -13.15 5.04 -446.09 -2.25 -15.40 16 9 C 0.52 12.62 7.17 87.66 0.63 13.25 16 10 O -0.56 -18.18 13.02 -3.04 -0.04 -18.22 16 11 C -0.13 -2.88 5.70 29.85 0.17 -2.71 16 12 C -0.10 -3.02 4.50 30.59 0.14 -2.88 16 13 C -0.09 -3.55 5.15 30.59 0.16 -3.40 16 14 C -0.02 -0.83 4.04 29.85 0.12 -0.71 16 15 C -0.53 -31.13 9.66 25.60 0.25 -30.88 16 16 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 17 C 0.00 0.14 5.47 84.65 0.46 0.60 16 18 N -0.95 -60.61 13.96 21.44 0.30 -60.31 16 19 Si 0.95 46.06 27.47 68.60 1.88 47.94 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.25 -11.68 6.54 99.48 0.65 -11.03 16 23 C -0.16 -2.98 5.34 -10.80 -0.06 -3.03 16 24 C -0.16 -3.05 10.18 30.61 0.31 -2.74 16 25 C -0.18 -3.72 9.74 30.61 0.30 -3.42 16 26 N -0.49 -10.34 10.53 -179.40 -1.89 -12.23 16 27 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.10 0.48 8.12 -2.39 -0.02 0.46 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.21 0.90 8.06 -2.91 -0.02 0.87 16 31 H 0.41 5.24 7.78 -92.71 -0.72 4.52 16 32 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.06 1.86 8.10 -2.38 -0.02 1.85 16 36 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 39 H 0.01 0.65 7.57 -2.38 -0.02 0.64 16 40 H 0.27 15.79 8.31 -92.70 -0.77 15.02 16 41 H 0.12 1.78 8.11 -2.39 -0.02 1.76 16 42 H 0.08 1.80 8.05 -2.39 -0.02 1.79 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.10 2.60 5.03 -2.39 -0.01 2.59 16 Total: -1.00 -75.83 382.12 1.87 -73.96 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.21 Total: 14.26 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 4.91 Total: -30.79 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -3.84 Total: -87.94 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.04 Total: -18.22 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.88 Total: 47.94 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -1.26 Total: 0.78 kcal Total: -75.83 1.87 -73.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588546451.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.729 kcal (2) G-P(sol) polarization free energy of solvation -75.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds