Wall clock time and date at job start Tue Mar 31 2020 14:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 C 1.50702 * 109.47059 * 239.99821 * 2 1 3 5 5 H 1.08002 * 120.00485 * 240.00064 * 4 2 1 6 6 C 1.37877 * 119.99787 * 60.00170 * 4 2 1 7 7 N 1.31515 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47345 * 89.99914 * 8 6 4 10 10 H 1.48498 * 109.47360 * 210.00118 * 8 6 4 11 11 H 1.48503 * 109.47232 * 329.99773 * 8 6 4 12 12 C 1.53002 * 109.47272 * 120.00059 * 2 1 3 13 13 N 1.46498 * 109.46922 * 300.00216 * 12 2 1 14 14 C 1.34773 * 119.99947 * 180.02562 * 13 12 2 15 15 O 1.21592 * 120.00207 * 355.05720 * 14 13 12 16 16 N 1.34781 * 120.00195 * 175.33219 * 14 13 12 17 17 C 1.45309 * 119.29459 * 184.73570 * 16 14 13 18 18 C 1.52304 * 113.42517 * 111.68969 * 17 16 14 19 19 C 1.53264 * 110.54060 * 66.36627 * 18 17 16 20 20 C 1.51778 * 108.03947 * 277.71168 * 19 18 17 21 21 S 1.75815 * 125.31968 * 247.19140 * 20 19 18 22 22 C 1.75805 * 90.99229 * 179.56482 * 21 20 19 23 23 C 1.33111 * 109.58429 * 0.13209 * 22 21 20 24 24 C 1.33992 * 124.75699 * 67.05752 * 20 19 18 25 25 C 1.46665 * 119.29121 * 5.00926 * 16 14 13 26 26 H 1.08996 * 109.47084 * 299.99959 * 1 2 3 27 27 H 1.09001 * 109.46880 * 60.00230 * 1 2 3 28 28 H 1.09010 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47488 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46792 * 300.00339 * 3 2 1 31 31 H 1.09001 * 109.47321 * 59.99615 * 3 2 1 32 32 H 0.96995 * 120.00582 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46805 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.46810 * 60.00010 * 12 2 1 35 35 H 0.96997 * 120.00300 * 359.97438 * 13 12 2 36 36 H 1.08999 * 108.63511 * 232.80278 * 17 16 14 37 37 H 1.08999 * 108.63333 * 350.60467 * 17 16 14 38 38 H 1.09004 * 109.38782 * 306.03274 * 18 17 16 39 39 H 1.09000 * 109.14576 * 186.54952 * 18 17 16 40 40 H 1.08993 * 109.75297 * 158.07500 * 19 18 17 41 41 H 1.08998 * 109.74484 * 37.33965 * 19 18 17 42 42 H 1.08009 * 125.20869 * 180.09348 * 22 21 20 43 43 H 1.08002 * 122.30619 * 180.11621 * 23 22 21 44 44 H 1.09005 * 109.86316 * 18.81580 * 25 16 14 45 45 H 1.08998 * 109.86426 * 139.77932 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5011 -1.5286 3.7827 16 7 1.5080 0.1965 4.7683 17 6 1.9553 -0.2568 6.0744 18 6 2.9513 0.6876 6.7347 19 6 2.2804 2.0222 7.0781 20 6 2.2721 2.8800 5.8259 21 16 3.1866 4.3652 5.6052 22 6 2.5529 4.5492 3.9756 23 6 1.7296 3.5401 3.7005 24 6 1.5637 2.6114 4.7208 25 6 0.6578 1.3824 4.6206 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7081 1.1608 -3.4844 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 0.9943 0.7582 2.3564 36 1 1.0860 -0.3604 6.7237 37 1 2.4213 -1.2358 5.9625 38 1 3.7839 0.8685 6.0548 39 1 3.3271 0.2286 7.6491 40 1 2.8422 2.5251 7.8652 41 1 1.2574 1.8454 7.4102 42 1 2.7942 5.3576 3.3013 43 1 1.2257 3.4492 2.7496 44 1 0.1633 1.3650 3.6493 45 1 -0.0879 1.4048 5.4153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590949394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:54 Heat of formation + Delta-G solvation = 3.508212 kcal Electronic energy + Delta-G solvation = -26140.471047 eV Core-core repulsion = 22670.574363 eV Total energy + Delta-G solvation = -3469.896684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.35963 -38.34699 -36.61186 -35.47781 -33.89480 -32.90786 -30.84398 -30.26194 -26.90591 -25.92534 -25.71166 -25.36604 -24.59542 -22.72117 -21.59610 -19.60318 -18.90148 -18.40343 -17.96496 -17.21990 -16.09324 -15.89064 -15.58763 -14.79405 -14.74334 -14.32819 -14.22964 -13.96637 -13.65782 -13.32045 -12.95314 -12.92306 -12.76100 -12.41087 -12.37882 -12.18294 -11.81033 -11.58502 -11.36154 -11.27499 -11.17118 -10.97335 -10.85112 -10.74589 -10.66634 -10.36558 -10.18353 -9.70816 -9.61287 -9.28273 -8.77891 -8.76303 -8.58866 -8.42030 -8.37988 -8.11002 -6.00655 -4.10200 0.95278 1.57341 1.92866 2.54424 3.13612 3.29518 3.36456 3.41074 3.61611 4.32293 4.45022 4.54144 4.65641 4.78520 4.86078 5.11200 5.18328 5.26248 5.29370 5.40252 5.43708 5.54465 5.64900 5.69405 5.90864 6.04495 6.10360 6.22187 6.30434 6.39468 6.45434 6.52930 6.70282 6.83014 6.83728 6.94915 7.05299 7.12849 7.25845 7.40775 7.57416 7.71310 8.02771 8.13790 8.38959 8.44725 8.89459 9.05106 9.55432 11.00783 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.003692 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.162326 B = 7581.746954 C = 8560.062926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.127 4.127 4 C -0.504 4.504 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.731 5.731 14 C 0.700 3.300 15 O -0.597 6.597 16 N -0.625 5.625 17 C 0.128 3.872 18 C -0.132 4.132 19 C -0.045 4.045 20 C -0.163 4.163 21 S 0.082 5.918 22 C -0.212 4.212 23 C -0.116 4.116 24 C -0.127 4.127 25 C 0.177 3.823 26 H 0.003 0.997 27 H 0.085 0.915 28 H 0.027 0.973 29 H 0.026 0.974 30 H 0.084 0.916 31 H 0.004 0.996 32 H 0.259 0.741 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.393 0.607 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.164 0.836 43 H 0.143 0.857 44 H 0.089 0.911 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 7.659 18.743 20.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.185 4.185 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.387 5.387 14 C 0.401 3.599 15 O -0.476 6.476 16 N -0.362 5.362 17 C 0.004 3.996 18 C -0.171 4.171 19 C -0.085 4.085 20 C -0.281 4.281 21 S 0.347 5.653 22 C -0.347 4.347 23 C -0.146 4.146 24 C -0.141 4.141 25 C 0.051 3.949 26 H 0.022 0.978 27 H 0.104 0.896 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.230 0.770 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.182 0.818 43 H 0.160 0.840 44 H 0.107 0.893 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.581 7.871 19.521 21.056 hybrid contribution -0.789 -0.563 -1.936 2.165 sum -0.208 7.308 17.586 19.045 Atomic orbital electron populations 1.21816 0.97810 0.99170 0.99856 1.18357 0.92741 0.92777 0.90561 1.21804 0.98550 0.98340 0.99819 1.20985 1.31379 1.12041 0.89858 0.92440 1.24865 0.94888 0.94904 0.98793 1.69798 1.36774 1.22778 1.23159 0.86584 0.79350 0.79388 0.82622 1.20726 1.21308 1.19909 1.21590 0.97755 0.95548 0.82526 1.45660 1.55417 1.32988 1.04600 1.16057 0.79767 0.83186 0.80847 1.90860 1.46896 1.24169 1.85630 1.46772 1.54379 1.29036 1.06002 1.20838 0.97416 0.98762 0.82600 1.21877 0.99291 0.94815 1.01148 1.20456 1.01901 0.93916 0.92189 1.24764 1.03163 0.99754 1.00435 1.84096 1.48164 1.21193 1.11834 1.25382 1.04967 1.04914 0.99472 1.20103 1.00247 0.94048 1.00188 1.20000 1.02039 0.98677 0.93408 1.20529 0.90540 0.80814 1.03039 0.97767 0.89627 0.95417 0.95529 0.89687 0.97686 0.93062 0.93121 0.92897 0.77022 0.92047 0.88687 0.91160 0.90240 0.90853 0.89898 0.81841 0.83967 0.89291 0.89388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.86 8.08 37.16 0.30 -2.56 16 4 C -0.50 -13.24 8.01 -34.44 -0.28 -13.52 16 5 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.48 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.15 3.25 4.51 -4.04 -0.02 3.24 16 13 N -0.73 -13.57 4.83 -65.22 -0.31 -13.88 16 14 C 0.70 12.92 8.24 -86.92 -0.72 12.21 16 15 O -0.60 -13.16 15.59 5.29 0.08 -13.08 16 16 N -0.63 -8.74 2.64 -180.66 -0.48 -9.22 16 17 C 0.13 1.49 5.76 -5.04 -0.03 1.46 16 18 C -0.13 -1.30 5.82 -26.95 -0.16 -1.46 16 19 C -0.05 -0.40 5.80 -27.21 -0.16 -0.55 16 20 C -0.16 -1.81 5.67 -35.27 -0.20 -2.01 16 21 S 0.08 0.88 23.33 -107.50 -2.51 -1.63 16 22 C -0.21 -2.43 11.21 28.95 0.32 -2.11 16 23 C -0.12 -1.43 10.02 -41.10 -0.41 -1.84 16 24 C -0.13 -1.53 5.51 -104.69 -0.58 -2.11 16 25 C 0.18 2.04 5.79 -3.95 -0.02 2.02 16 26 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 27 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 28 H 0.03 0.62 8.14 -51.92 -0.42 0.20 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 2.10 6.07 -51.92 -0.32 1.79 16 31 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.39 6.61 3.69 -40.82 -0.15 6.46 16 36 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.09 1.30 6.78 -51.93 -0.35 0.95 16 38 H 0.07 0.88 7.90 -51.93 -0.41 0.47 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.62 7.92 -51.93 -0.41 0.21 16 42 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 43 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 45 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 359.96 15.07 5.42 5.42 Total: -1.00 -29.59 359.96 -10.84 -40.43 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.74 Total: 6.12 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -1.81 Total: -6.95 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: -0.27 Total: -46.07 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.51 Total: -1.63 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.59 -10.84 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.934 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds