Wall clock time and date at job start Tue Mar 31 2020 14:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 C 1.50702 * 109.47059 * 239.99821 * 2 1 3 5 5 H 1.08002 * 120.00485 * 240.00064 * 4 2 1 6 6 C 1.37877 * 119.99787 * 60.00170 * 4 2 1 7 7 N 1.31515 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00052 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47345 * 89.99914 * 8 6 4 10 10 H 1.48498 * 109.47360 * 210.00118 * 8 6 4 11 11 H 1.48503 * 109.47232 * 329.99773 * 8 6 4 12 12 C 1.53002 * 109.47272 * 120.00059 * 2 1 3 13 13 N 1.46498 * 109.46922 * 300.00216 * 12 2 1 14 14 C 1.34773 * 119.99947 * 180.02562 * 13 12 2 15 15 O 1.21592 * 120.00207 * 355.05720 * 14 13 12 16 16 N 1.34781 * 120.00195 * 175.33219 * 14 13 12 17 17 C 1.45309 * 119.29459 * 184.73570 * 16 14 13 18 18 C 1.52304 * 113.42517 * 111.68969 * 17 16 14 19 19 C 1.53264 * 110.54060 * 66.36627 * 18 17 16 20 20 C 1.51778 * 108.03947 * 277.71168 * 19 18 17 21 21 S 1.75815 * 125.31968 * 247.19140 * 20 19 18 22 22 C 1.75805 * 90.99229 * 179.56482 * 21 20 19 23 23 C 1.33111 * 109.58429 * 0.13209 * 22 21 20 24 24 C 1.33992 * 124.75699 * 67.05752 * 20 19 18 25 25 C 1.46665 * 119.29121 * 5.00926 * 16 14 13 26 26 H 1.08996 * 109.47084 * 299.99959 * 1 2 3 27 27 H 1.09001 * 109.46880 * 60.00230 * 1 2 3 28 28 H 1.09010 * 109.46790 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47488 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.46792 * 300.00339 * 3 2 1 31 31 H 1.09001 * 109.47321 * 59.99615 * 3 2 1 32 32 H 0.96995 * 120.00582 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.46805 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.46810 * 60.00010 * 12 2 1 35 35 H 0.96997 * 120.00300 * 359.97438 * 13 12 2 36 36 H 1.08999 * 108.63511 * 232.80278 * 17 16 14 37 37 H 1.08999 * 108.63333 * 350.60467 * 17 16 14 38 38 H 1.09004 * 109.38782 * 306.03274 * 18 17 16 39 39 H 1.09000 * 109.14576 * 186.54952 * 18 17 16 40 40 H 1.08993 * 109.75297 * 158.07500 * 19 18 17 41 41 H 1.08998 * 109.74484 * 37.33965 * 19 18 17 42 42 H 1.08009 * 125.20869 * 180.09348 * 22 21 20 43 43 H 1.08002 * 122.30619 * 180.11621 * 23 22 21 44 44 H 1.09005 * 109.86316 * 18.81580 * 25 16 14 45 45 H 1.08998 * 109.86426 * 139.77932 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6533 -1.5886 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1616 -4.4124 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7566 -3.7120 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5011 -1.5286 3.7827 16 7 1.5080 0.1965 4.7683 17 6 1.9553 -0.2568 6.0744 18 6 2.9513 0.6876 6.7347 19 6 2.2804 2.0222 7.0781 20 6 2.2721 2.8800 5.8259 21 16 3.1866 4.3652 5.6052 22 6 2.5529 4.5492 3.9756 23 6 1.7296 3.5401 3.7005 24 6 1.5637 2.6114 4.7208 25 6 0.6578 1.3824 4.6206 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 0.7081 1.1608 -3.4844 33 1 3.1300 -0.7208 1.2494 34 1 1.6767 -1.7490 1.2492 35 1 0.9943 0.7582 2.3564 36 1 1.0860 -0.3604 6.7237 37 1 2.4213 -1.2358 5.9625 38 1 3.7839 0.8685 6.0548 39 1 3.3271 0.2286 7.6491 40 1 2.8422 2.5251 7.8652 41 1 1.2574 1.8454 7.4102 42 1 2.7942 5.3576 3.3013 43 1 1.2257 3.4492 2.7496 44 1 0.1633 1.3650 3.6493 45 1 -0.0879 1.4048 5.4153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590949394.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:54 Heat of formation + Delta-G solvation = -11.636758 kcal Electronic energy + Delta-G solvation = -26141.127783 eV Core-core repulsion = 22670.574363 eV Total energy + Delta-G solvation = -3470.553419 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.60453 -39.47558 -38.25657 -36.61302 -35.28160 -34.29183 -32.55419 -31.25760 -28.03273 -27.56753 -27.43891 -26.84022 -25.99499 -23.78932 -22.51036 -20.92596 -20.64176 -19.35647 -19.26932 -18.07863 -17.79472 -17.26631 -16.84099 -16.61966 -16.01159 -15.49305 -15.44840 -14.95272 -14.84793 -14.73239 -14.59636 -14.14810 -14.01218 -13.76070 -13.50126 -13.24927 -13.15959 -13.07972 -12.74713 -12.67821 -12.59193 -12.37073 -12.25360 -12.13139 -12.07987 -11.83023 -11.59372 -11.48543 -11.28222 -11.08275 -10.70442 -10.39155 -10.11932 -9.55399 -9.41461 -9.25994 -8.01528 -6.16818 0.09158 0.74592 1.07098 1.42902 1.45618 1.52668 1.55748 1.97764 2.18805 2.46788 3.08827 3.22138 3.76139 3.80261 4.00748 4.01880 4.23357 4.39092 4.39892 4.46022 4.52895 4.58301 4.62649 4.70540 4.77156 4.86618 4.93778 4.97289 5.04033 5.06214 5.12072 5.18336 5.20517 5.30501 5.38876 5.43137 5.59271 5.61129 5.67355 5.67688 5.71076 5.96337 6.15193 6.21829 6.44486 6.86619 7.02086 7.50632 7.61053 8.97489 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.017626 B = 0.003692 C = 0.003270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.162326 B = 7581.746954 C = 8560.062926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.114 4.114 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.725 5.725 14 C 0.695 3.305 15 O -0.639 6.639 16 N -0.615 5.615 17 C 0.121 3.879 18 C -0.123 4.123 19 C -0.042 4.042 20 C -0.167 4.167 21 S 0.098 5.902 22 C -0.225 4.225 23 C -0.133 4.133 24 C -0.144 4.144 25 C 0.175 3.825 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.013 0.987 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.260 0.740 33 H 0.030 0.970 34 H 0.035 0.965 35 H 0.402 0.598 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.175 0.825 43 H 0.139 0.861 44 H 0.086 0.914 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 8.642 20.767 22.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.172 4.172 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.202 1.202 12 C 0.042 3.958 13 N -0.382 5.382 14 C 0.397 3.603 15 O -0.521 6.521 16 N -0.350 5.350 17 C -0.002 4.002 18 C -0.162 4.162 19 C -0.081 4.081 20 C -0.285 4.285 21 S 0.363 5.637 22 C -0.360 4.360 23 C -0.164 4.164 24 C -0.157 4.157 25 C 0.050 3.950 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.032 0.968 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.241 0.759 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.124 0.876 42 H 0.193 0.807 43 H 0.157 0.843 44 H 0.104 0.896 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.165 8.900 21.583 23.347 hybrid contribution -0.540 -0.829 -2.492 2.681 sum -0.705 8.071 19.091 20.739 Atomic orbital electron populations 1.21642 0.96982 0.98662 1.00231 1.18346 0.93316 0.92992 0.90102 1.21617 0.97599 0.97832 1.00153 1.21249 1.31758 1.12147 0.91558 0.93886 1.25414 0.95123 0.95559 1.00814 1.69894 1.36947 1.23206 1.23587 0.85780 0.78640 0.78535 0.79973 1.20435 1.20768 1.20235 1.21125 0.96352 0.94822 0.83483 1.45377 1.55732 1.33093 1.04011 1.16243 0.79449 0.83050 0.81591 1.90830 1.48739 1.26200 1.86325 1.46836 1.53741 1.29025 1.05426 1.21101 0.99183 0.98017 0.81930 1.21808 0.97747 0.95345 1.01339 1.20568 1.03417 0.92645 0.91472 1.25162 1.02290 0.99920 1.01102 1.84030 1.47653 1.20965 1.11043 1.25638 1.04822 1.05164 1.00335 1.20227 1.00917 0.94789 1.00428 1.20035 1.02983 0.98941 0.93790 1.20757 0.90575 0.79420 1.04257 0.94773 0.91722 0.96303 0.96776 0.91741 0.94809 0.93011 0.95169 0.94621 0.75880 0.88534 0.91206 0.94252 0.87514 0.89097 0.87633 0.80727 0.84348 0.89627 0.86011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 3 C -0.11 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -28.33 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.63 5.15 84.65 0.44 2.06 16 7 N -0.90 -47.73 9.35 21.45 0.20 -47.53 16 8 Si 0.94 42.87 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 C 0.17 7.45 4.51 86.38 0.39 7.84 16 13 N -0.73 -26.76 4.83 -478.53 -2.31 -29.07 16 14 C 0.70 25.51 8.24 179.05 1.47 26.98 16 15 O -0.64 -28.72 15.59 -4.00 -0.06 -28.78 16 16 N -0.61 -16.17 2.64 -843.74 -2.23 -18.39 16 17 C 0.12 2.54 5.76 86.37 0.50 3.04 16 18 C -0.12 -2.10 5.82 30.45 0.18 -1.92 16 19 C -0.04 -0.58 5.80 30.28 0.18 -0.40 16 20 C -0.17 -3.27 5.67 25.06 0.14 -3.12 16 21 S 0.10 1.90 23.33 -56.49 -1.32 0.58 16 22 C -0.22 -4.86 11.21 66.67 0.75 -4.11 16 23 C -0.13 -3.12 10.02 21.29 0.21 -2.91 16 24 C -0.14 -3.15 5.51 -19.91 -0.11 -3.26 16 25 C 0.17 3.57 5.79 86.35 0.50 4.07 16 26 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 27 H 0.06 3.19 6.07 -2.39 -0.01 3.17 16 28 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 3.19 6.07 -2.38 -0.01 3.18 16 31 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 32 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 33 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.40 13.09 3.69 -92.71 -0.34 12.75 16 36 H 0.10 1.39 8.04 -2.39 -0.02 1.37 16 37 H 0.07 1.86 6.78 -2.39 -0.02 1.85 16 38 H 0.04 0.93 7.90 -2.39 -0.02 0.91 16 39 H 0.11 1.26 8.14 -2.39 -0.02 1.25 16 40 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 1.04 7.92 -2.39 -0.02 1.02 16 42 H 0.18 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 44 H 0.09 1.81 5.88 -2.38 -0.01 1.79 16 45 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.11 359.96 2.95 -62.16 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.65 Total: 22.74 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.99 Total: -6.61 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -4.34 Total: -94.99 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.06 Total: -28.78 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -1.32 Total: 0.58 kcal Total: -65.11 2.95 -62.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590949394.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.525 kcal (2) G-P(sol) polarization free energy of solvation -65.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds