Wall clock time and date at job start Tue Mar 31 2020 13:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47211 * 206.86437 * 3 2 1 5 5 C 1.52992 * 109.47096 * 86.86060 * 3 2 1 6 6 N 1.46503 * 109.47009 * 326.86017 * 3 2 1 7 7 C 1.46503 * 119.99921 * 114.05817 * 6 3 2 8 8 C 1.50697 * 109.47405 * 262.74367 * 7 6 3 9 9 H 1.08001 * 120.00002 * 0.54428 * 8 7 6 10 10 C 1.37871 * 119.99919 * 180.53814 * 8 7 6 11 11 N 1.31517 * 119.99822 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00200 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46986 * 90.00096 * 12 10 8 14 14 H 1.48501 * 109.47262 * 209.99941 * 12 10 8 15 15 H 1.48494 * 109.47092 * 330.00198 * 12 10 8 16 16 C 1.34780 * 119.99991 * 294.06081 * 6 3 2 17 17 O 1.21525 * 119.99728 * 161.72654 * 16 6 3 18 18 C 1.48140 * 120.00209 * 341.72802 * 16 6 3 19 19 C 1.39138 * 119.67939 * 224.50995 * 18 16 6 20 20 C 1.38820 * 119.23537 * 180.02562 * 19 18 16 21 21 C 1.38257 * 118.59509 * 0.02562 * 20 19 18 22 22 C 1.39515 * 119.28608 * 359.97438 * 21 20 19 23 23 S 1.76201 * 119.63981 * 180.02562 * 22 21 20 24 24 C 1.81404 * 102.99791 * 168.41754 * 23 22 21 25 25 N 1.32147 * 120.71410 * 0.27364 * 22 21 20 26 26 H 1.08999 * 109.47193 * 179.60167 * 1 2 3 27 27 H 1.08997 * 109.47030 * 299.60383 * 1 2 3 28 28 H 1.08999 * 109.47025 * 59.60448 * 1 2 3 29 29 H 1.09006 * 109.47425 * 240.00396 * 2 1 3 30 30 H 1.08994 * 109.47423 * 120.00106 * 2 1 3 31 31 H 1.09001 * 109.47139 * 198.56121 * 4 3 2 32 32 H 1.09000 * 109.47368 * 318.55598 * 4 3 2 33 33 H 1.09000 * 109.47704 * 78.55910 * 4 3 2 34 34 H 1.09003 * 109.47152 * 304.35040 * 5 3 2 35 35 H 1.08995 * 109.47416 * 64.35399 * 5 3 2 36 36 H 1.09005 * 109.47032 * 184.34939 * 5 3 2 37 37 H 1.09001 * 109.46570 * 22.74720 * 7 6 3 38 38 H 1.09001 * 109.47022 * 142.74251 * 7 6 3 39 39 H 0.97003 * 120.00070 * 180.02562 * 11 10 8 40 40 H 1.07996 * 120.38050 * 0.04758 * 19 18 16 41 41 H 1.08006 * 120.70192 * 179.97438 * 20 19 18 42 42 H 1.07997 * 120.35984 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.47287 * 68.64909 * 24 23 22 44 44 H 1.09001 * 109.47083 * 188.65121 * 24 23 22 45 45 H 1.08999 * 109.47098 * 308.64860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.4233 1.4943 -0.6518 5 6 2.1356 1.9496 1.4403 6 7 1.1124 2.2884 -0.7551 7 6 0.3501 3.3342 -0.0683 8 6 -1.0278 2.8190 0.2584 9 1 -1.3049 1.8102 -0.0100 10 6 -1.9348 3.6354 0.9002 11 7 -3.1372 3.1855 1.1857 12 14 -1.4558 5.3803 1.3640 13 1 -1.7941 6.2997 0.2480 14 1 -2.1968 5.7893 2.5842 15 1 0.0043 5.4391 1.6284 16 6 0.9603 2.1046 -2.0816 17 8 -0.0172 2.5515 -2.6487 18 6 1.9845 1.3578 -2.8482 19 6 2.4208 1.8487 -4.0749 20 6 3.3805 1.1411 -4.7857 21 6 3.8712 -0.0335 -4.2464 22 6 3.3910 -0.4703 -3.0114 23 16 4.0103 -1.9657 -2.3150 24 6 3.3780 -1.9169 -0.6155 25 7 2.4732 0.2229 -2.3606 26 1 -0.3633 -1.0276 -0.0071 27 1 -0.3633 0.5077 0.8935 28 1 -0.3633 0.5200 -0.8864 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9242 2.4199 -0.3680 32 1 4.0154 0.6431 -0.3159 33 1 3.3158 1.4570 -1.7359 34 1 1.1673 1.8406 1.9288 35 1 2.8829 1.3691 1.9811 36 1 2.4246 3.0006 1.4370 37 1 0.8624 3.6114 0.8530 38 1 0.2676 4.2077 -0.7150 39 1 -3.7754 3.7600 1.6369 40 1 2.0176 2.7697 -4.4692 41 1 3.7358 1.5002 -5.7404 42 1 4.6187 -0.6065 -4.7749 43 1 2.2947 -2.0377 -0.6272 44 1 3.8274 -2.7242 -0.0372 45 1 3.6319 -0.9594 -0.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592623099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:31 Heat of formation + Delta-G solvation = 87.411285 kcal Electronic energy + Delta-G solvation = -27535.026909 eV Core-core repulsion = 24068.768535 eV Total energy + Delta-G solvation = -3466.258374 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44153 -38.85523 -36.97016 -33.50442 -32.64634 -32.01734 -31.48485 -30.16658 -28.98229 -28.40673 -26.45545 -24.58010 -23.83700 -22.77495 -22.03889 -21.02938 -18.89654 -17.48589 -17.12489 -16.48627 -16.18976 -15.86386 -15.65068 -15.14806 -14.83228 -14.49012 -14.39171 -13.94575 -13.57547 -13.44508 -13.06842 -12.82895 -12.70426 -12.54312 -12.26019 -12.14315 -11.98885 -11.61183 -11.53541 -11.33852 -11.07671 -10.92489 -10.88997 -10.55664 -10.40574 -10.29629 -10.22719 -10.13741 -9.97244 -9.27986 -9.17481 -9.03515 -8.74747 -8.50537 -7.71822 -7.61045 -5.99677 -3.96575 0.70975 1.00631 1.33290 2.12138 3.02565 3.29831 3.35362 3.37731 3.59363 3.66984 4.34190 4.44386 4.68522 4.85293 4.93390 5.00800 5.09275 5.14252 5.21639 5.29471 5.33618 5.41709 5.52290 5.63889 5.79434 5.90458 5.92282 5.96970 6.06926 6.13382 6.19790 6.27838 6.33365 6.45312 6.67833 6.70650 6.78774 6.80348 6.90229 7.02787 7.38587 7.42658 7.46383 7.66810 8.23389 8.53177 8.84692 9.11274 9.60197 11.12731 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.004980 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.804639 B = 5621.172056 C = 6262.320965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.169 4.169 3 C 0.181 3.819 4 C -0.190 4.190 5 C -0.152 4.152 6 N -0.569 5.569 7 C 0.211 3.789 8 C -0.524 4.524 9 H 0.097 0.903 10 C 0.072 3.928 11 N -0.898 5.898 12 Si 0.866 3.134 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.268 1.268 16 C 0.563 3.437 17 O -0.510 6.510 18 C 0.111 3.889 19 C -0.133 4.133 20 C -0.065 4.065 21 C -0.136 4.136 22 C 0.098 3.902 23 S -0.085 6.085 24 C -0.154 4.154 25 N -0.423 5.423 26 H 0.029 0.971 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.123 0.877 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.043 0.957 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.760 -8.129 -6.511 21.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.207 4.207 3 C 0.096 3.904 4 C -0.247 4.247 5 C -0.209 4.209 6 N -0.300 5.300 7 C 0.091 3.909 8 C -0.563 4.563 9 H 0.115 0.885 10 C -0.129 4.129 11 N -0.537 5.537 12 Si 0.694 3.306 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.193 1.193 16 C 0.346 3.654 17 O -0.385 6.385 18 C -0.027 4.027 19 C -0.156 4.156 20 C -0.093 4.093 21 C -0.162 4.162 22 C -0.153 4.153 23 S 0.153 5.847 24 C -0.322 4.322 25 N -0.140 5.140 26 H 0.048 0.952 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.041 0.959 39 H 0.072 0.928 40 H 0.163 0.837 41 H 0.162 0.838 42 H 0.158 0.842 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 18.378 -8.996 -6.285 21.405 hybrid contribution -0.397 2.270 0.240 2.317 sum 17.981 -6.726 -6.045 20.127 Atomic orbital electron populations 1.22021 0.94567 0.99363 1.04399 1.23330 0.97986 0.95850 1.03529 1.20243 0.87785 0.91074 0.91332 1.23406 0.96527 1.00772 1.03997 1.22164 1.03151 1.00605 0.94974 1.47870 1.41543 1.34853 1.05758 1.19844 0.92598 0.85952 0.92477 1.21687 0.94962 1.02703 1.36914 0.88485 1.24844 0.94804 0.97577 0.95704 1.69889 1.05250 1.36513 1.42052 0.87015 0.78877 0.86404 0.78341 1.20181 1.21234 1.19278 1.17622 0.84550 0.80465 0.82727 1.90837 1.27788 1.49990 1.69837 1.21426 0.95468 0.92333 0.93476 1.22002 0.97556 1.01939 0.94124 1.21456 0.94755 0.93558 0.99509 1.21724 1.01587 0.97437 0.95431 1.23134 0.97735 0.99081 0.95344 1.85363 1.65642 1.21223 1.12473 1.24539 1.06177 1.07179 0.94302 1.68781 1.08419 1.05887 1.30942 0.95210 0.90847 0.91885 0.86006 0.93018 0.93555 0.92188 0.89340 0.90190 0.92537 0.92459 0.93935 0.95892 0.92784 0.83687 0.83781 0.84162 0.87976 0.88168 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 7.87 37.16 0.29 -2.65 16 2 C -0.17 -2.73 2.44 -26.73 -0.07 -2.79 16 3 C 0.18 3.05 0.80 -131.82 -0.10 2.94 16 4 C -0.19 -2.74 7.40 37.16 0.27 -2.46 16 5 C -0.15 -2.46 6.88 37.15 0.26 -2.21 16 6 N -0.57 -11.76 1.50 -161.17 -0.24 -12.00 16 7 C 0.21 5.04 3.57 -5.19 -0.02 5.02 16 8 C -0.52 -14.59 8.53 -34.44 -0.29 -14.88 16 9 H 0.10 2.92 4.58 -52.49 -0.24 2.68 16 10 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 11 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 12 Si 0.87 21.33 27.46 -169.99 -4.67 16.66 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.18 6.56 56.52 0.37 -5.81 16 16 C 0.56 11.83 5.28 -12.19 -0.06 11.77 16 17 O -0.51 -12.80 16.75 5.34 0.09 -12.71 16 18 C 0.11 1.84 4.23 -83.03 -0.35 1.49 16 19 C -0.13 -1.80 9.71 -39.03 -0.38 -2.18 16 20 C -0.07 -0.66 10.16 -39.36 -0.40 -1.06 16 21 C -0.14 -1.40 9.84 -39.10 -0.38 -1.78 16 22 C 0.10 1.21 6.39 -16.94 -0.11 1.11 16 23 S -0.08 -0.88 22.55 -107.50 -2.42 -3.31 16 24 C -0.15 -1.52 8.16 101.05 0.82 -0.70 16 25 N -0.42 -6.25 3.00 -13.47 -0.04 -6.29 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.65 6.14 -51.93 -0.32 1.34 16 28 H 0.06 1.48 4.86 -51.93 -0.25 1.23 16 29 H 0.12 1.84 1.61 -60.01 -0.10 1.74 16 30 H 0.05 0.73 7.11 -51.93 -0.37 0.36 16 31 H 0.05 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.06 0.75 5.54 -51.93 -0.29 0.46 16 33 H 0.09 1.33 2.47 -100.27 -0.25 1.08 16 34 H 0.08 1.49 7.29 -51.93 -0.38 1.11 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.93 6.98 -51.93 -0.36 0.57 16 37 H 0.04 0.97 4.41 -51.93 -0.23 0.74 16 38 H 0.02 0.58 7.35 -51.93 -0.38 0.20 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 42 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.10 1.14 5.98 -51.92 -0.31 0.83 16 44 H 0.10 0.76 8.14 -51.92 -0.42 0.33 16 45 H 0.10 1.08 3.81 -51.92 -0.20 0.89 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -32.65 335.73 -7.86 -40.51 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -5.79 Total: 5.22 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -0.62 Total: -6.41 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.49 Total: -45.03 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.71 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.42 Total: -3.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.65 -7.86 -40.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592623099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.925 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds