Wall clock time and date at job start Tue Mar 31 2020 13:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 C 1.52998 * 109.47211 * 206.86437 * 3 2 1 5 5 C 1.52992 * 109.47096 * 86.86060 * 3 2 1 6 6 N 1.46503 * 109.47009 * 326.86017 * 3 2 1 7 7 C 1.46503 * 119.99921 * 114.05817 * 6 3 2 8 8 C 1.50697 * 109.47405 * 262.74367 * 7 6 3 9 9 H 1.08001 * 120.00002 * 0.54428 * 8 7 6 10 10 C 1.37871 * 119.99919 * 180.53814 * 8 7 6 11 11 N 1.31517 * 119.99822 * 180.02562 * 10 8 7 12 12 Si 1.86802 * 120.00200 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.46986 * 90.00096 * 12 10 8 14 14 H 1.48501 * 109.47262 * 209.99941 * 12 10 8 15 15 H 1.48494 * 109.47092 * 330.00198 * 12 10 8 16 16 C 1.34780 * 119.99991 * 294.06081 * 6 3 2 17 17 O 1.21525 * 119.99728 * 161.72654 * 16 6 3 18 18 C 1.48140 * 120.00209 * 341.72802 * 16 6 3 19 19 C 1.39138 * 119.67939 * 224.50995 * 18 16 6 20 20 C 1.38820 * 119.23537 * 180.02562 * 19 18 16 21 21 C 1.38257 * 118.59509 * 0.02562 * 20 19 18 22 22 C 1.39515 * 119.28608 * 359.97438 * 21 20 19 23 23 S 1.76201 * 119.63981 * 180.02562 * 22 21 20 24 24 C 1.81404 * 102.99791 * 168.41754 * 23 22 21 25 25 N 1.32147 * 120.71410 * 0.27364 * 22 21 20 26 26 H 1.08999 * 109.47193 * 179.60167 * 1 2 3 27 27 H 1.08997 * 109.47030 * 299.60383 * 1 2 3 28 28 H 1.08999 * 109.47025 * 59.60448 * 1 2 3 29 29 H 1.09006 * 109.47425 * 240.00396 * 2 1 3 30 30 H 1.08994 * 109.47423 * 120.00106 * 2 1 3 31 31 H 1.09001 * 109.47139 * 198.56121 * 4 3 2 32 32 H 1.09000 * 109.47368 * 318.55598 * 4 3 2 33 33 H 1.09000 * 109.47704 * 78.55910 * 4 3 2 34 34 H 1.09003 * 109.47152 * 304.35040 * 5 3 2 35 35 H 1.08995 * 109.47416 * 64.35399 * 5 3 2 36 36 H 1.09005 * 109.47032 * 184.34939 * 5 3 2 37 37 H 1.09001 * 109.46570 * 22.74720 * 7 6 3 38 38 H 1.09001 * 109.47022 * 142.74251 * 7 6 3 39 39 H 0.97003 * 120.00070 * 180.02562 * 11 10 8 40 40 H 1.07996 * 120.38050 * 0.04758 * 19 18 16 41 41 H 1.08006 * 120.70192 * 179.97438 * 20 19 18 42 42 H 1.07997 * 120.35984 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.47287 * 68.64909 * 24 23 22 44 44 H 1.09001 * 109.47083 * 188.65121 * 24 23 22 45 45 H 1.08999 * 109.47098 * 308.64860 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.4233 1.4943 -0.6518 5 6 2.1356 1.9496 1.4403 6 7 1.1124 2.2884 -0.7551 7 6 0.3501 3.3342 -0.0683 8 6 -1.0278 2.8190 0.2584 9 1 -1.3049 1.8102 -0.0100 10 6 -1.9348 3.6354 0.9002 11 7 -3.1372 3.1855 1.1857 12 14 -1.4558 5.3803 1.3640 13 1 -1.7941 6.2997 0.2480 14 1 -2.1968 5.7893 2.5842 15 1 0.0043 5.4391 1.6284 16 6 0.9603 2.1046 -2.0816 17 8 -0.0172 2.5515 -2.6487 18 6 1.9845 1.3578 -2.8482 19 6 2.4208 1.8487 -4.0749 20 6 3.3805 1.1411 -4.7857 21 6 3.8712 -0.0335 -4.2464 22 6 3.3910 -0.4703 -3.0114 23 16 4.0103 -1.9657 -2.3150 24 6 3.3780 -1.9169 -0.6155 25 7 2.4732 0.2229 -2.3606 26 1 -0.3633 -1.0276 -0.0071 27 1 -0.3633 0.5077 0.8935 28 1 -0.3633 0.5200 -0.8864 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.9242 2.4199 -0.3680 32 1 4.0154 0.6431 -0.3159 33 1 3.3158 1.4570 -1.7359 34 1 1.1673 1.8406 1.9288 35 1 2.8829 1.3691 1.9811 36 1 2.4246 3.0006 1.4370 37 1 0.8624 3.6114 0.8530 38 1 0.2676 4.2077 -0.7150 39 1 -3.7754 3.7600 1.6369 40 1 2.0176 2.7697 -4.4692 41 1 3.7358 1.5002 -5.7404 42 1 4.6187 -0.6065 -4.7749 43 1 2.2947 -2.0377 -0.6272 44 1 3.8274 -2.7242 -0.0372 45 1 3.6319 -0.9594 -0.1607 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592623099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:30 Heat of formation + Delta-G solvation = 67.113990 kcal Electronic energy + Delta-G solvation = -27535.907066 eV Core-core repulsion = 24068.768535 eV Total energy + Delta-G solvation = -3467.138531 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.65404 -40.18614 -38.52693 -35.21784 -34.02913 -33.55481 -32.69849 -31.61047 -30.10876 -29.89604 -27.85922 -25.85267 -24.80055 -24.31627 -23.74726 -22.44983 -20.15236 -19.19079 -18.59058 -17.79899 -17.25356 -17.11917 -16.87614 -16.51076 -16.41871 -15.84828 -15.60268 -15.47738 -14.87359 -14.63739 -14.52332 -14.27023 -14.18807 -13.71578 -13.54173 -13.50946 -13.20584 -13.07495 -12.94200 -12.89236 -12.66910 -12.45564 -12.26088 -12.17024 -11.99055 -11.70650 -11.65977 -11.42612 -11.15210 -11.08256 -10.78788 -10.71832 -10.15597 -9.95101 -9.32695 -8.52550 -8.22983 -6.24403 -0.31379 0.09313 0.49626 1.29590 1.30419 1.33903 1.41324 1.64483 2.11542 2.34446 2.57119 3.06769 3.15861 3.72620 3.87821 3.94702 4.00509 4.09476 4.14397 4.18387 4.28842 4.40491 4.42070 4.54742 4.63704 4.67409 4.77347 4.80790 4.83251 4.86157 4.97559 4.99192 5.03789 5.10405 5.15864 5.27874 5.29511 5.38939 5.42623 5.52250 5.54896 5.77678 5.87583 6.34478 6.41887 6.65939 6.82600 7.20868 7.38531 8.92738 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018765 B = 0.004980 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.804639 B = 5621.172056 C = 6262.320965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.160 4.160 3 C 0.172 3.828 4 C -0.182 4.182 5 C -0.151 4.151 6 N -0.573 5.573 7 C 0.219 3.781 8 C -0.521 4.521 9 H 0.061 0.939 10 C 0.009 3.991 11 N -0.949 5.949 12 Si 0.933 3.067 13 H -0.279 1.279 14 H -0.280 1.280 15 H -0.240 1.240 16 C 0.557 3.443 17 O -0.572 6.572 18 C 0.081 3.919 19 C -0.137 4.137 20 C -0.050 4.050 21 C -0.120 4.120 22 C 0.081 3.919 23 S -0.057 6.057 24 C -0.160 4.160 25 N -0.438 5.438 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.021 0.979 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.094 0.906 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.007 0.993 39 H 0.263 0.737 40 H 0.141 0.859 41 H 0.188 0.812 42 H 0.178 0.822 43 H 0.086 0.914 44 H 0.128 0.872 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.457 -9.113 -7.297 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.198 4.198 3 C 0.088 3.912 4 C -0.239 4.239 5 C -0.208 4.208 6 N -0.303 5.303 7 C 0.097 3.903 8 C -0.560 4.560 9 H 0.079 0.921 10 C -0.188 4.188 11 N -0.591 5.591 12 Si 0.757 3.243 13 H -0.205 1.205 14 H -0.206 1.206 15 H -0.163 1.163 16 C 0.344 3.656 17 O -0.451 6.451 18 C -0.055 4.055 19 C -0.161 4.161 20 C -0.076 4.076 21 C -0.145 4.145 22 C -0.170 4.170 23 S 0.181 5.819 24 C -0.328 4.328 25 N -0.155 5.155 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.040 0.960 29 H 0.157 0.843 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.025 0.975 39 H 0.072 0.928 40 H 0.159 0.841 41 H 0.205 0.795 42 H 0.195 0.805 43 H 0.105 0.895 44 H 0.146 0.854 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 23.134 -10.004 -7.057 26.174 hybrid contribution -1.822 2.361 0.395 3.008 sum 21.313 -7.643 -6.661 23.601 Atomic orbital electron populations 1.21813 0.97959 0.98728 1.00589 1.23419 0.94430 0.96226 1.05712 1.20593 0.88576 0.90500 0.91509 1.23315 0.94554 1.02044 1.03996 1.22167 1.02544 1.01394 0.94701 1.47940 1.41580 1.34562 1.06241 1.19542 0.91216 0.86495 0.93015 1.21922 0.97062 1.01340 1.35674 0.92119 1.25743 0.94661 1.02382 0.95980 1.70056 1.06755 1.38400 1.43862 0.85928 0.80212 0.80279 0.77849 1.20515 1.20558 1.16277 1.18359 0.84705 0.79804 0.82742 1.90775 1.30499 1.52831 1.70998 1.20694 0.96503 0.93772 0.94556 1.22135 0.98364 1.02330 0.93231 1.21886 0.92714 0.92717 1.00330 1.22220 1.00928 0.97058 0.94274 1.23693 0.97178 0.99662 0.96459 1.85300 1.64623 1.19593 1.12358 1.24549 1.05450 1.08106 0.94692 1.68507 1.09477 1.05590 1.31974 0.94158 0.94261 0.96031 0.84293 0.90335 0.93168 0.89739 0.89295 0.93339 0.88752 0.92466 0.92136 0.97494 0.92810 0.84072 0.79484 0.80487 0.89526 0.85393 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.70 7.87 71.98 0.57 -5.13 16 2 C -0.16 -5.11 2.44 30.59 0.07 -5.03 16 3 C 0.17 5.70 0.80 3.60 0.00 5.71 16 4 C -0.18 -4.81 7.40 71.98 0.53 -4.28 16 5 C -0.15 -4.74 6.88 71.98 0.50 -4.24 16 6 N -0.57 -24.55 1.50 -782.11 -1.18 -25.73 16 7 C 0.22 10.87 3.57 85.63 0.31 11.18 16 8 C -0.52 -30.89 8.53 25.60 0.22 -30.67 16 9 H 0.06 3.98 4.58 -2.91 -0.01 3.97 16 10 C 0.01 0.54 5.47 84.65 0.46 1.00 16 11 N -0.95 -61.49 13.96 21.45 0.30 -61.19 16 12 Si 0.93 45.35 27.46 68.60 1.88 47.23 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 14 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 15 H -0.24 -10.41 6.56 99.48 0.65 -9.76 16 16 C 0.56 24.61 5.28 86.87 0.46 25.07 16 17 O -0.57 -30.92 16.75 -3.79 -0.06 -30.98 16 18 C 0.08 2.68 4.23 41.84 0.18 2.85 16 19 C -0.14 -3.54 9.71 22.63 0.22 -3.32 16 20 C -0.05 -0.80 10.16 22.41 0.23 -0.57 16 21 C -0.12 -1.89 9.84 22.58 0.22 -1.67 16 22 C 0.08 1.74 6.39 84.95 0.54 2.28 16 23 S -0.06 -0.95 22.55 -56.49 -1.27 -2.23 16 24 C -0.16 -2.61 8.16 113.37 0.92 -1.69 16 25 N -0.44 -12.25 3.00 -196.53 -0.59 -12.84 16 26 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.04 1.90 6.14 -2.39 -0.01 1.89 16 28 H 0.02 1.07 4.86 -2.39 -0.01 1.06 16 29 H 0.14 4.05 1.61 -18.35 -0.03 4.02 16 30 H 0.08 2.07 7.11 -2.39 -0.02 2.05 16 31 H 0.05 1.28 8.00 -2.39 -0.02 1.26 16 32 H 0.08 1.79 5.54 -2.39 -0.01 1.78 16 33 H 0.09 2.48 2.47 -86.31 -0.21 2.27 16 34 H 0.05 1.82 7.29 -2.39 -0.02 1.80 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.78 6.98 -2.38 -0.02 1.76 16 37 H 0.06 2.78 4.41 -2.39 -0.01 2.77 16 38 H 0.01 0.37 7.35 -2.39 -0.02 0.35 16 39 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 40 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 41 H 0.19 1.41 8.06 -2.91 -0.02 1.39 16 42 H 0.18 1.55 8.06 -2.91 -0.02 1.52 16 43 H 0.09 1.73 5.98 -2.39 -0.01 1.71 16 44 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 45 H 0.10 1.71 3.81 -2.39 -0.01 1.70 16 Total: -1.00 -79.51 335.73 5.26 -74.25 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.75 Total: 20.01 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.43 Total: -8.52 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -1.47 Total: -99.76 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -0.06 Total: -30.98 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.23 kcal Atomic # 16 Polarization: -0.95 SS G_CDS: -1.27 Total: -2.23 kcal Total: -79.51 5.26 -74.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592623099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.360 kcal (2) G-P(sol) polarization free energy of solvation -79.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds