Wall clock time and date at job start Tue Mar 31 2020 13:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76199 * 102.99651 * 2 1 4 4 C 1.39552 * 119.64208 * 174.96960 * 3 2 1 5 5 C 1.38227 * 119.28729 * 179.97438 * 4 3 2 6 6 C 1.38862 * 118.59162 * 359.97438 * 5 4 3 7 7 C 1.39099 * 119.23740 * 0.02562 * 6 5 4 8 8 C 1.48144 * 119.67594 * 180.02562 * 7 6 5 9 9 O 1.21519 * 120.00280 * 154.34471 * 8 7 6 10 10 N 1.34777 * 120.00218 * 334.34012 * 8 7 6 11 11 C 1.46501 * 119.99722 * 355.10611 * 10 8 7 12 12 C 1.50697 * 109.47281 * 106.27735 * 11 10 8 13 13 H 1.08002 * 120.00089 * 3.97880 * 12 11 10 14 14 C 1.37880 * 119.99956 * 183.98354 * 12 11 10 15 15 N 1.31520 * 119.99738 * 184.94572 * 14 12 11 16 16 Si 1.86792 * 120.00018 * 4.94263 * 14 12 11 17 17 H 1.48505 * 109.47019 * 94.93764 * 16 14 12 18 18 H 1.48503 * 109.47280 * 214.93199 * 16 14 12 19 19 H 1.48490 * 109.47445 * 334.93692 * 16 14 12 20 20 C 1.46498 * 120.00324 * 175.10471 * 10 8 7 21 21 C 1.53002 * 109.47140 * 90.00328 * 20 10 8 22 22 C 1.52996 * 109.46982 * 180.02562 * 21 20 10 23 23 C 1.53002 * 109.47168 * 65.00021 * 22 21 20 24 24 C 1.53000 * 109.47222 * 184.99812 * 22 21 20 25 25 N 1.32126 * 119.64541 * 354.69392 * 3 2 1 26 26 H 1.09002 * 109.46710 * 184.99144 * 1 2 3 27 27 H 1.09003 * 109.47005 * 304.98280 * 1 2 3 28 28 H 1.08999 * 109.47384 * 64.98533 * 1 2 3 29 29 H 1.07998 * 120.35572 * 359.95341 * 4 3 2 30 30 H 1.08002 * 120.70017 * 180.02562 * 5 4 3 31 31 H 1.07992 * 120.38060 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47177 * 226.27635 * 11 10 8 33 33 H 1.09002 * 109.47391 * 346.27129 * 11 10 8 34 34 H 0.96998 * 119.99562 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47370 * 210.00055 * 20 10 8 36 36 H 1.09001 * 109.47340 * 330.00086 * 20 10 8 37 37 H 1.09002 * 109.46767 * 300.00097 * 21 20 10 38 38 H 1.08993 * 109.47463 * 59.99609 * 21 20 10 39 39 H 1.08997 * 109.47665 * 304.99762 * 22 21 20 40 40 H 1.08998 * 109.47403 * 60.00041 * 23 22 21 41 41 H 1.09004 * 109.46822 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46994 * 299.99397 * 23 22 21 43 43 H 1.09000 * 109.47011 * 59.99408 * 24 22 21 44 44 H 1.08993 * 109.47715 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.46713 * 300.00052 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5428 2.1177 0.1064 5 6 3.8454 3.4664 0.1051 6 6 2.8058 4.3806 -0.0033 7 6 1.4992 3.9146 -0.1061 8 6 0.3828 4.8813 -0.2227 9 8 -0.6542 4.5498 -0.7625 10 7 0.5171 6.1286 0.2700 11 6 1.7240 6.4959 1.0148 12 6 2.5909 7.3842 0.1601 13 1 2.2455 7.7012 -0.8129 14 6 3.8249 7.7923 0.6203 15 7 4.5394 8.6447 -0.0815 16 14 4.4818 7.1344 2.2405 17 1 5.3587 5.9644 1.9806 18 1 5.2626 8.1957 2.9255 19 1 3.3465 6.7201 3.1033 20 6 -0.5437 7.1171 0.0608 21 6 -1.5440 7.0440 1.2162 22 6 -2.6522 8.0759 0.9974 23 6 -3.4518 7.7079 -0.2541 24 6 -3.5831 8.0898 2.2115 25 7 1.2432 2.6108 -0.1062 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5892 0.8420 28 1 -0.3634 0.4345 -0.9312 29 1 4.3291 1.3820 0.1891 30 1 4.8688 3.8020 0.1858 31 1 3.0093 5.4412 -0.0068 32 1 1.4424 7.0284 1.9232 33 1 2.2766 5.5942 1.2788 34 1 5.4074 8.9320 0.2424 35 1 -0.1076 8.1152 0.0204 36 1 -1.0566 6.9065 -0.8777 37 1 -1.9802 6.0459 1.2566 38 1 -1.0312 7.2545 2.1547 39 1 -2.2090 9.0633 0.8680 40 1 -3.8951 6.7206 -0.1248 41 1 -4.2416 8.4428 -0.4097 42 1 -2.7887 7.6980 -1.1191 43 1 -3.0135 8.3519 3.1031 44 1 -4.3729 8.8246 2.0555 45 1 -4.0264 7.1024 2.3408 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592761806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:35 Heat of formation + Delta-G solvation = 5.974771 kcal Electronic energy + Delta-G solvation = -25581.972846 eV Core-core repulsion = 22112.183120 eV Total energy + Delta-G solvation = -3469.789726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.39075 -38.57725 -36.53980 -35.29577 -32.78764 -32.29126 -31.54528 -29.21431 -28.77565 -27.90313 -27.02840 -24.63779 -23.55312 -22.88998 -22.27433 -19.84623 -19.37689 -17.61343 -17.21634 -16.40693 -16.31047 -15.71876 -15.28744 -15.07075 -14.68139 -14.42261 -14.18542 -13.96063 -13.61138 -13.40849 -13.31834 -13.19276 -13.01679 -12.75426 -12.64016 -12.35940 -12.16227 -12.08310 -11.67100 -11.34355 -11.06012 -11.02605 -10.85820 -10.66688 -10.61732 -10.45629 -10.34653 -10.16602 -9.89871 -9.73090 -9.57331 -9.31519 -9.12271 -8.85640 -7.88678 -7.43526 -6.45717 -4.48942 0.99675 1.41322 1.57281 2.30235 3.00582 3.12159 3.14312 3.19175 3.50096 4.05963 4.12507 4.71060 4.83375 5.03209 5.05596 5.09647 5.12953 5.16873 5.21459 5.29407 5.36678 5.56020 5.70201 5.71561 5.80194 5.80509 5.86993 5.89393 5.95682 5.98940 6.08138 6.17168 6.26073 6.29686 6.33216 6.36521 6.50002 6.57622 6.61076 6.66900 6.89609 7.08751 7.28732 7.80150 7.95474 8.23721 8.62450 8.74769 9.11322 10.65186 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.005600 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.264692 B = 4998.487690 C = 7729.947627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.096 6.096 3 C 0.102 3.898 4 C -0.132 4.132 5 C -0.077 4.077 6 C -0.153 4.153 7 C 0.096 3.904 8 C 0.567 3.433 9 O -0.540 6.540 10 N -0.579 5.579 11 C 0.184 3.816 12 C -0.549 4.549 13 H 0.086 0.914 14 C 0.084 3.916 15 N -0.873 5.873 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.260 1.260 20 C 0.123 3.877 21 C -0.129 4.129 22 C -0.094 4.094 23 C -0.148 4.148 24 C -0.145 4.145 25 N -0.445 5.445 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.208 0.792 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.271 0.729 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -8.359 3.550 10.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.141 5.859 3 C -0.150 4.150 4 C -0.158 4.158 5 C -0.104 4.104 6 C -0.174 4.174 7 C -0.045 4.045 8 C 0.353 3.647 9 O -0.418 6.418 10 N -0.309 5.309 11 C 0.063 3.937 12 C -0.587 4.587 13 H 0.104 0.896 14 C -0.123 4.123 15 N -0.509 5.509 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.203 1.203 19 H -0.184 1.184 20 C 0.000 4.000 21 C -0.168 4.168 22 C -0.113 4.113 23 C -0.205 4.205 24 C -0.202 4.202 25 N -0.159 5.159 26 H 0.117 0.883 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.161 0.839 31 H 0.224 0.776 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.739 -9.692 3.181 12.226 hybrid contribution 0.737 1.149 0.931 1.652 sum -6.002 -8.544 4.112 11.222 Atomic orbital electron populations 1.23397 0.93378 1.05517 1.07098 1.85180 1.08286 0.99704 1.92725 1.22817 0.92000 0.97794 1.02350 1.21818 0.95558 0.97146 1.01295 1.21654 1.00447 0.91998 0.96343 1.24353 0.92064 1.06937 0.94055 1.20945 0.93507 0.90187 0.99891 1.17780 0.85853 0.81767 0.79287 1.90687 1.28546 1.77896 1.44662 1.47731 1.20239 1.09651 1.53298 1.20603 0.83304 0.97109 0.92694 1.21301 1.01590 1.30531 1.05268 0.89608 1.24907 0.96600 0.94063 0.96687 1.69888 1.12654 1.29976 1.38358 0.87130 0.80327 0.79848 0.84511 1.19157 1.20271 1.18368 1.21451 0.87649 0.92615 0.98262 1.21996 0.96119 0.99370 0.99269 1.21042 0.95610 0.99356 0.95249 1.21880 0.99730 1.01075 0.97795 1.21820 0.99147 1.01420 0.97806 1.67770 1.34722 1.01667 1.11699 0.88286 0.89485 0.89351 0.84447 0.83892 0.77631 0.94985 0.93224 0.91882 0.89475 0.90512 0.91853 0.91902 0.90992 0.92768 0.93233 0.92207 0.92832 0.92991 0.92942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 10.02 101.05 1.01 -0.52 16 2 S -0.10 -1.31 22.55 -107.50 -2.42 -3.74 16 3 C 0.10 1.72 7.00 -16.93 -0.12 1.60 16 4 C -0.13 -2.03 9.84 -39.10 -0.38 -2.42 16 5 C -0.08 -1.29 10.16 -39.35 -0.40 -1.69 16 6 C -0.15 -3.00 7.47 -39.03 -0.29 -3.29 16 7 C 0.10 2.00 6.38 -83.03 -0.53 1.47 16 8 C 0.57 12.33 7.56 -12.19 -0.09 12.24 16 9 O -0.54 -12.63 16.61 5.35 0.09 -12.54 16 10 N -0.58 -11.87 2.51 -176.06 -0.44 -12.31 16 11 C 0.18 3.92 3.66 -5.19 -0.02 3.90 16 12 C -0.55 -13.30 7.64 -34.44 -0.26 -13.56 16 13 H 0.09 2.32 8.06 -52.49 -0.42 1.90 16 14 C 0.08 2.07 5.34 -17.82 -0.10 1.98 16 15 N -0.87 -23.37 13.96 55.43 0.77 -22.59 16 16 Si 0.86 18.17 27.16 -169.99 -4.62 13.55 16 17 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 18 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.26 -5.32 6.62 56.52 0.37 -4.94 16 20 C 0.12 2.21 5.06 -4.04 -0.02 2.19 16 21 C -0.13 -2.01 5.01 -26.73 -0.13 -2.14 16 22 C -0.09 -1.21 2.92 -90.62 -0.26 -1.47 16 23 C -0.15 -1.85 8.95 37.16 0.33 -1.52 16 24 C -0.14 -1.63 9.19 37.16 0.34 -1.29 16 25 N -0.44 -8.74 9.25 -8.66 -0.08 -8.82 16 26 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 27 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 28 H 0.09 1.18 8.14 -51.92 -0.42 0.76 16 29 H 0.14 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.14 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.21 4.42 2.81 -52.49 -0.15 4.28 16 32 H 0.03 0.68 7.70 -51.93 -0.40 0.28 16 33 H 0.05 1.06 3.31 -51.93 -0.17 0.89 16 34 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.09 1.58 7.84 -51.93 -0.41 1.17 16 36 H 0.08 1.40 5.92 -51.93 -0.31 1.09 16 37 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.79 6.56 -51.93 -0.34 0.45 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -28.12 375.25 -8.83 -36.95 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -6.86 Total: 8.38 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.93 Total: -4.53 kcal Atomic # 7 Polarization: -43.98 SS G_CDS: 0.25 Total: -43.72 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.09 Total: -12.54 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -4.62 Total: 13.55 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.42 Total: -3.74 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.12 -8.83 -36.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.921 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds