Wall clock time and date at job start Tue Mar 31 2020 13:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76199 * 102.99651 * 2 1 4 4 C 1.39552 * 119.64208 * 174.96960 * 3 2 1 5 5 C 1.38227 * 119.28729 * 179.97438 * 4 3 2 6 6 C 1.38862 * 118.59162 * 359.97438 * 5 4 3 7 7 C 1.39099 * 119.23740 * 0.02562 * 6 5 4 8 8 C 1.48144 * 119.67594 * 180.02562 * 7 6 5 9 9 O 1.21519 * 120.00280 * 154.34471 * 8 7 6 10 10 N 1.34777 * 120.00218 * 334.34012 * 8 7 6 11 11 C 1.46501 * 119.99722 * 355.10611 * 10 8 7 12 12 C 1.50697 * 109.47281 * 106.27735 * 11 10 8 13 13 H 1.08002 * 120.00089 * 3.97880 * 12 11 10 14 14 C 1.37880 * 119.99956 * 183.98354 * 12 11 10 15 15 N 1.31520 * 119.99738 * 184.94572 * 14 12 11 16 16 Si 1.86792 * 120.00018 * 4.94263 * 14 12 11 17 17 H 1.48505 * 109.47019 * 94.93764 * 16 14 12 18 18 H 1.48503 * 109.47280 * 214.93199 * 16 14 12 19 19 H 1.48490 * 109.47445 * 334.93692 * 16 14 12 20 20 C 1.46498 * 120.00324 * 175.10471 * 10 8 7 21 21 C 1.53002 * 109.47140 * 90.00328 * 20 10 8 22 22 C 1.52996 * 109.46982 * 180.02562 * 21 20 10 23 23 C 1.53002 * 109.47168 * 65.00021 * 22 21 20 24 24 C 1.53000 * 109.47222 * 184.99812 * 22 21 20 25 25 N 1.32126 * 119.64541 * 354.69392 * 3 2 1 26 26 H 1.09002 * 109.46710 * 184.99144 * 1 2 3 27 27 H 1.09003 * 109.47005 * 304.98280 * 1 2 3 28 28 H 1.08999 * 109.47384 * 64.98533 * 1 2 3 29 29 H 1.07998 * 120.35572 * 359.95341 * 4 3 2 30 30 H 1.08002 * 120.70017 * 180.02562 * 5 4 3 31 31 H 1.07992 * 120.38060 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47177 * 226.27635 * 11 10 8 33 33 H 1.09002 * 109.47391 * 346.27129 * 11 10 8 34 34 H 0.96998 * 119.99562 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47370 * 210.00055 * 20 10 8 36 36 H 1.09001 * 109.47340 * 330.00086 * 20 10 8 37 37 H 1.09002 * 109.46767 * 300.00097 * 21 20 10 38 38 H 1.08993 * 109.47463 * 59.99609 * 21 20 10 39 39 H 1.08997 * 109.47665 * 304.99762 * 22 21 20 40 40 H 1.08998 * 109.47403 * 60.00041 * 23 22 21 41 41 H 1.09004 * 109.46822 * 179.97438 * 23 22 21 42 42 H 1.08998 * 109.46994 * 299.99397 * 23 22 21 43 43 H 1.09000 * 109.47011 * 59.99408 * 24 22 21 44 44 H 1.08993 * 109.47715 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.46713 * 300.00052 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5428 2.1177 0.1064 5 6 3.8454 3.4664 0.1051 6 6 2.8058 4.3806 -0.0033 7 6 1.4992 3.9146 -0.1061 8 6 0.3828 4.8813 -0.2227 9 8 -0.6542 4.5498 -0.7625 10 7 0.5171 6.1286 0.2700 11 6 1.7240 6.4959 1.0148 12 6 2.5909 7.3842 0.1601 13 1 2.2455 7.7012 -0.8129 14 6 3.8249 7.7923 0.6203 15 7 4.5394 8.6447 -0.0815 16 14 4.4818 7.1344 2.2405 17 1 5.3587 5.9644 1.9806 18 1 5.2626 8.1957 2.9255 19 1 3.3465 6.7201 3.1033 20 6 -0.5437 7.1171 0.0608 21 6 -1.5440 7.0440 1.2162 22 6 -2.6522 8.0759 0.9974 23 6 -3.4518 7.7079 -0.2541 24 6 -3.5831 8.0898 2.2115 25 7 1.2432 2.6108 -0.1062 26 1 -0.3633 -1.0238 0.0894 27 1 -0.3633 0.5892 0.8420 28 1 -0.3634 0.4345 -0.9312 29 1 4.3291 1.3820 0.1891 30 1 4.8688 3.8020 0.1858 31 1 3.0093 5.4412 -0.0068 32 1 1.4424 7.0284 1.9232 33 1 2.2766 5.5942 1.2788 34 1 5.4074 8.9320 0.2424 35 1 -0.1076 8.1152 0.0204 36 1 -1.0566 6.9065 -0.8777 37 1 -1.9802 6.0459 1.2566 38 1 -1.0312 7.2545 2.1547 39 1 -2.2090 9.0633 0.8680 40 1 -3.8951 6.7206 -0.1248 41 1 -4.2416 8.4428 -0.4097 42 1 -2.7887 7.6980 -1.1191 43 1 -3.0135 8.3519 3.1031 44 1 -4.3729 8.8246 2.0555 45 1 -4.0264 7.1024 2.3408 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592761806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:34 Heat of formation + Delta-G solvation = -8.891066 kcal Electronic energy + Delta-G solvation = -25582.617477 eV Core-core repulsion = 22112.183120 eV Total energy + Delta-G solvation = -3470.434357 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.89699 -40.07802 -37.90379 -36.84608 -34.61874 -33.66793 -32.95071 -30.71891 -29.79055 -29.53092 -28.02686 -26.03205 -25.03339 -24.50394 -23.75687 -21.03963 -20.82685 -19.11655 -19.04758 -17.94069 -17.73295 -17.06562 -16.79481 -16.44544 -16.12344 -15.92952 -15.52083 -15.21739 -15.02149 -14.67661 -14.58193 -14.49012 -14.36060 -14.23859 -14.04340 -13.74138 -13.29284 -13.20389 -13.02155 -12.76858 -12.66989 -12.36097 -12.27230 -12.06136 -11.81683 -11.77647 -11.70465 -11.56784 -11.46190 -11.21918 -11.00643 -10.84597 -10.69495 -10.51908 -9.56233 -8.59036 -8.37518 -6.45892 -0.41452 0.05188 0.42017 1.19831 1.35028 1.40466 1.48612 1.62909 1.95458 2.28398 2.64991 2.93834 3.22950 3.71781 3.89946 3.91994 3.92388 4.04439 4.06881 4.22367 4.26710 4.29749 4.34889 4.46536 4.49546 4.54756 4.65096 4.74683 4.81774 4.85068 4.90956 4.92236 4.93822 5.00591 5.08200 5.10356 5.15576 5.28133 5.31651 5.43504 5.46520 5.49526 5.62419 6.03568 6.37823 6.55601 6.63999 7.05908 7.19809 8.77191 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008296 B = 0.005600 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3374.264692 B = 4998.487690 C = 7729.947627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.058 6.058 3 C 0.085 3.915 4 C -0.118 4.118 5 C -0.074 4.074 6 C -0.170 4.170 7 C 0.071 3.929 8 C 0.560 3.440 9 O -0.568 6.568 10 N -0.581 5.581 11 C 0.193 3.807 12 C -0.544 4.544 13 H 0.042 0.958 14 C 0.040 3.960 15 N -0.922 5.922 16 Si 0.912 3.088 17 H -0.243 1.243 18 H -0.280 1.280 19 H -0.247 1.247 20 C 0.120 3.880 21 C -0.117 4.117 22 C -0.091 4.091 23 C -0.145 4.145 24 C -0.140 4.140 25 N -0.466 5.466 26 H 0.134 0.866 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.179 0.821 30 H 0.169 0.831 31 H 0.187 0.813 32 H 0.038 0.962 33 H 0.062 0.938 34 H 0.274 0.726 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.069 0.931 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 -10.535 5.360 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.179 5.821 3 C -0.167 4.167 4 C -0.143 4.143 5 C -0.100 4.100 6 C -0.192 4.192 7 C -0.069 4.069 8 C 0.347 3.653 9 O -0.448 6.448 10 N -0.310 5.310 11 C 0.072 3.928 12 C -0.582 4.582 13 H 0.060 0.940 14 C -0.162 4.162 15 N -0.559 5.559 16 Si 0.734 3.266 17 H -0.167 1.167 18 H -0.205 1.205 19 H -0.170 1.170 20 C -0.002 4.002 21 C -0.156 4.156 22 C -0.110 4.110 23 C -0.203 4.203 24 C -0.198 4.198 25 N -0.181 5.181 26 H 0.153 0.847 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.196 0.804 30 H 0.187 0.813 31 H 0.204 0.796 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.242 -11.864 4.992 14.306 hybrid contribution 0.552 1.707 0.256 1.813 sum -5.690 -10.157 5.249 12.770 Atomic orbital electron populations 1.23490 0.92758 1.07442 1.05875 1.85028 1.08897 0.96246 1.91921 1.23588 0.92647 0.99302 1.01118 1.22257 0.95871 0.97386 0.98764 1.21952 1.00744 0.92193 0.95159 1.24093 0.92640 1.06484 0.95978 1.20774 0.93345 0.90670 1.02085 1.18148 0.86102 0.82235 0.78786 1.90645 1.29734 1.78474 1.45962 1.47827 1.20441 1.09855 1.52884 1.20464 0.83210 0.96953 0.92169 1.21245 1.02269 1.30785 1.03903 0.93965 1.25613 0.96515 0.93935 1.00136 1.70016 1.13367 1.31893 1.40659 0.86237 0.80331 0.79912 0.80152 1.16661 1.20535 1.17003 1.21563 0.87667 0.91713 0.99227 1.21894 0.96181 0.99566 0.97940 1.21053 0.95128 0.98458 0.96403 1.21857 0.99958 1.01415 0.97033 1.21782 0.99162 1.01993 0.96819 1.67771 1.36079 1.01471 1.12771 0.84740 0.90568 0.90719 0.80400 0.81319 0.79629 0.94394 0.92050 0.91685 0.90090 0.91313 0.93273 0.91812 0.90546 0.93418 0.91043 0.93671 0.92472 0.91174 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 10.02 113.37 1.14 -1.73 16 2 S -0.06 -1.42 22.55 -56.49 -1.27 -2.69 16 3 C 0.08 2.70 7.00 84.97 0.59 3.29 16 4 C -0.12 -3.22 9.84 22.58 0.22 -3.00 16 5 C -0.07 -2.27 10.16 22.42 0.23 -2.04 16 6 C -0.17 -6.62 7.47 22.63 0.17 -6.45 16 7 C 0.07 3.00 6.38 41.83 0.27 3.26 16 8 C 0.56 25.30 7.56 86.87 0.66 25.96 16 9 O -0.57 -27.77 16.61 -3.77 -0.06 -27.83 16 10 N -0.58 -24.78 2.51 -829.22 -2.08 -26.86 16 11 C 0.19 8.37 3.66 85.63 0.31 8.68 16 12 C -0.54 -27.32 7.64 25.60 0.20 -27.13 16 13 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 14 C 0.04 2.02 5.34 84.65 0.45 2.47 16 15 N -0.92 -50.68 13.96 21.45 0.30 -50.38 16 16 Si 0.91 36.55 27.16 68.60 1.86 38.41 16 17 H -0.24 -8.79 7.11 99.48 0.71 -8.08 16 18 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.25 -9.30 6.62 99.48 0.66 -8.64 16 20 C 0.12 4.56 5.06 86.38 0.44 4.99 16 21 C -0.12 -3.73 5.01 30.59 0.15 -3.57 16 22 C -0.09 -2.32 2.92 -10.79 -0.03 -2.36 16 23 C -0.15 -3.63 8.95 71.98 0.64 -2.99 16 24 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 25 N -0.47 -18.16 9.25 -181.33 -1.68 -19.84 16 26 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.18 3.40 8.06 -2.91 -0.02 3.37 16 30 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 31 H 0.19 8.08 2.81 -2.91 -0.01 8.07 16 32 H 0.04 1.60 7.70 -2.38 -0.02 1.58 16 33 H 0.06 2.59 3.31 -2.39 -0.01 2.58 16 34 H 0.27 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.08 3.11 7.84 -2.39 -0.02 3.10 16 36 H 0.07 2.69 5.92 -2.39 -0.01 2.68 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.04 1.24 6.56 -2.39 -0.02 1.23 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -63.61 375.25 4.10 -59.51 By element: Atomic # 1 Polarization: 31.63 SS G_CDS: 0.94 Total: 32.57 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.10 Total: -2.89 kcal Atomic # 7 Polarization: -93.62 SS G_CDS: -3.46 Total: -97.07 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.83 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 1.86 Total: 38.41 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -1.27 Total: -2.69 kcal Total: -63.61 4.10 -59.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592761806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.616 kcal (2) G-P(sol) polarization free energy of solvation -63.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds