Wall clock time and date at job start Tue Mar 31 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47450 * 2 1 4 4 F 1.39898 * 109.47263 * 239.99730 * 2 1 3 5 5 C 1.53004 * 109.47276 * 119.99694 * 2 1 3 6 6 C 1.53001 * 109.47146 * 59.99697 * 5 2 1 7 7 N 1.46499 * 109.47479 * 180.02562 * 6 5 2 8 8 C 1.34774 * 120.00180 * 180.02562 * 7 6 5 9 9 O 1.21364 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.49360 * 119.99903 * 180.02562 * 8 7 6 11 11 O 1.21374 * 119.99668 * 359.97438 * 10 8 7 12 12 N 1.34774 * 119.99903 * 179.97438 * 10 8 7 13 13 C 1.39737 * 120.00151 * 185.10976 * 12 10 8 14 14 C 1.39345 * 119.95280 * 34.20097 * 13 12 10 15 15 C 1.38468 * 120.42730 * 180.02562 * 14 13 12 16 16 C 1.37701 * 120.32582 * 0.27575 * 15 14 13 17 17 C 1.40755 * 119.89228 * 359.49817 * 16 15 14 18 18 C 1.41412 * 120.20094 * 180.25163 * 17 16 15 19 19 H 1.08002 * 119.99578 * 205.30097 * 18 17 16 20 20 C 1.39933 * 120.00171 * 25.30677 * 18 17 16 21 21 N 1.30826 * 120.00058 * 16.70517 * 20 18 17 22 22 Si 1.86800 * 119.99719 * 196.70272 * 20 18 17 23 23 H 1.48508 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47187 * 120.00164 * 22 20 18 25 25 H 1.48502 * 109.47106 * 239.99936 * 22 20 18 26 26 C 1.38299 * 119.95453 * 214.22787 * 13 12 10 27 27 H 1.08995 * 109.47142 * 299.99939 * 1 2 3 28 28 H 1.08997 * 109.46927 * 60.00636 * 1 2 3 29 29 H 1.09004 * 109.46584 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46581 * 300.00123 * 3 2 1 32 32 H 1.09000 * 109.47056 * 59.99182 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00621 * 5 2 1 34 34 H 1.08995 * 109.47716 * 180.02562 * 5 2 1 35 35 H 1.09009 * 109.46645 * 60.00213 * 6 5 2 36 36 H 1.09004 * 109.47126 * 300.00605 * 6 5 2 37 37 H 0.97000 * 119.99886 * 359.97438 * 7 6 5 38 38 H 0.96999 * 119.99850 * 5.10924 * 12 10 8 39 39 H 1.08003 * 119.78393 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.83731 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.04816 * 179.74621 * 16 15 14 42 42 H 0.96998 * 119.99721 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.16343 * 359.94529 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0401 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2494 7 7 2.0178 -2.8541 2.4459 8 6 1.6925 -4.1445 2.6591 9 8 0.9951 -4.7344 1.8600 10 6 2.1894 -4.8482 3.8792 11 8 2.8866 -4.2580 4.6785 12 7 1.8637 -6.1385 4.0926 13 6 2.2380 -6.7658 5.2838 14 6 2.2737 -6.0384 6.4718 15 6 2.6436 -6.6499 7.6578 16 6 2.9861 -7.9836 7.6749 17 6 2.9502 -8.7324 6.4837 18 6 3.2955 -10.1037 6.4948 19 1 3.6638 -10.5751 5.5956 20 6 3.1600 -10.8499 7.6708 21 7 2.4251 -10.3951 8.6530 22 14 4.0284 -12.4953 7.8382 23 1 4.7904 -12.7815 6.5961 24 1 4.9618 -12.4472 8.9922 25 1 3.0229 -13.5655 8.0592 26 6 2.5731 -8.1075 5.2820 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -0.2074 2.1393 34 1 3.1300 -0.7208 1.2496 35 1 1.8934 -2.6776 0.3594 36 1 0.4400 -2.1637 1.2494 37 1 2.5756 -2.3827 3.0843 38 1 1.3694 -6.6316 3.4193 39 1 2.0110 -4.9908 6.4675 40 1 2.6676 -6.0772 8.5730 41 1 3.2779 -8.4550 8.6017 42 1 2.3315 -10.9122 9.4683 43 1 2.5455 -8.6725 4.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595160676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:23 Heat of formation + Delta-G solvation = -111.722602 kcal Electronic energy + Delta-G solvation = -25813.807089 eV Core-core repulsion = 21772.700446 eV Total energy + Delta-G solvation = -4041.106643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.05531 -40.62388 -38.84460 -37.18769 -36.71017 -34.86224 -34.11465 -33.07780 -29.97796 -29.87933 -28.52986 -28.02526 -25.44066 -25.15176 -23.13506 -21.26580 -21.01013 -20.67623 -19.76970 -18.39897 -17.62969 -16.83341 -16.46750 -15.98608 -15.90284 -15.67414 -15.48607 -14.99741 -14.94182 -14.87621 -14.47930 -13.89872 -13.68975 -13.41883 -13.02825 -12.94753 -12.82564 -12.75886 -12.48351 -12.32049 -12.29276 -11.87108 -11.73061 -11.65489 -11.38043 -11.16623 -11.13975 -11.07612 -10.68107 -10.55758 -10.15655 -9.81278 -9.47516 -9.41075 -9.22979 -9.00040 -7.52616 -7.01053 -6.78598 -4.40965 1.46948 2.40724 2.75580 2.84020 3.06992 3.12365 3.17981 3.50801 3.73728 3.92218 3.99404 4.11840 4.15176 4.26622 4.59975 4.63220 4.68129 4.72888 5.01327 5.05181 5.15687 5.26526 5.40366 5.49015 5.54243 5.63477 5.70533 5.75067 6.02991 6.20821 6.42563 6.57098 6.80080 6.87009 6.98140 7.05672 7.19555 7.46072 7.52196 7.72167 7.91297 7.98041 8.04260 8.20417 8.36198 8.59628 8.85020 8.90195 10.16603 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038267 B = 0.001961 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.527995 B =14278.461912 C =14613.066728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 C -0.173 4.173 4 F -0.207 7.207 5 C -0.155 4.155 6 C 0.114 3.886 7 N -0.704 5.704 8 C 0.511 3.489 9 O -0.520 6.520 10 C 0.498 3.502 11 O -0.506 6.506 12 N -0.631 5.631 13 C 0.145 3.855 14 C -0.224 4.224 15 C -0.096 4.096 16 C -0.162 4.162 17 C 0.121 3.879 18 C -0.462 4.462 19 H 0.079 0.921 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.238 4.238 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.413 0.587 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.121 0.879 42 H 0.280 0.720 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 18.763 -12.200 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.101 3.899 3 C -0.230 4.230 4 F -0.188 7.188 5 C -0.193 4.193 6 C -0.009 4.009 7 N -0.359 5.359 8 C 0.292 3.708 9 O -0.396 6.396 10 C 0.278 3.722 11 O -0.381 6.381 12 N -0.275 5.275 13 C 0.053 3.947 14 C -0.245 4.245 15 C -0.115 4.115 16 C -0.182 4.182 17 C 0.118 3.882 18 C -0.492 4.492 19 H 0.097 0.903 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.733 3.267 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.259 4.259 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.249 0.751 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.091 0.909 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.657 18.696 -12.030 22.390 hybrid contribution 0.325 -0.784 0.029 0.849 sum -2.331 17.913 -12.002 21.687 Atomic orbital electron populations 1.22487 0.93335 1.04121 1.03777 1.20818 0.94952 0.92120 0.82024 1.22374 1.02618 0.94283 1.03748 1.92880 1.90272 1.82816 1.52840 1.22419 1.03004 0.95336 0.98533 1.21505 0.99959 0.91424 0.87995 1.45691 1.53098 1.11556 1.25513 1.20319 0.81050 0.82691 0.86779 1.90759 1.36632 1.65932 1.46238 1.19928 0.82080 0.83568 0.86577 1.90774 1.35634 1.65707 1.46018 1.43183 1.54059 1.10623 1.19663 1.17441 1.01481 0.92327 0.83405 1.20285 1.13946 0.98835 0.91404 1.20577 1.00045 0.95179 0.95666 1.21423 1.04992 0.92265 0.99481 1.17386 0.87687 0.92962 0.90181 1.19562 1.38831 0.94069 0.96714 0.90316 1.25899 0.93121 1.00113 0.95049 1.69824 1.28458 1.38235 1.05436 0.86253 0.79907 0.81062 0.79452 1.18400 1.19698 1.20007 1.20740 1.13159 0.92961 0.99082 0.90420 0.91164 0.90766 0.91196 0.91153 0.90469 0.89000 0.89595 0.90324 0.90453 0.75021 0.75113 0.88098 0.88821 0.86145 0.90878 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.98 8.58 37.16 0.32 -0.66 16 2 C 0.12 0.76 1.37 -90.62 -0.12 0.64 16 3 C -0.17 -0.80 8.93 37.16 0.33 -0.47 16 4 F -0.21 -1.95 16.29 2.25 0.04 -1.91 16 5 C -0.15 -0.97 4.65 -26.73 -0.12 -1.09 16 6 C 0.11 1.04 5.20 -4.04 -0.02 1.02 16 7 N -0.70 -7.89 5.55 -60.75 -0.34 -8.23 16 8 C 0.51 7.60 7.89 -11.63 -0.09 7.51 16 9 O -0.52 -8.64 16.48 5.48 0.09 -8.55 16 10 C 0.50 8.79 7.62 -11.63 -0.09 8.70 16 11 O -0.51 -9.90 14.20 5.48 0.08 -9.82 16 12 N -0.63 -11.90 5.32 -10.34 -0.05 -11.96 16 13 C 0.14 3.28 6.25 -83.82 -0.52 2.76 16 14 C -0.22 -5.22 8.66 -39.08 -0.34 -5.55 16 15 C -0.10 -2.28 10.02 -39.69 -0.40 -2.67 16 16 C -0.16 -4.19 8.69 -38.83 -0.34 -4.53 16 17 C 0.12 3.19 5.57 -106.85 -0.59 2.60 16 18 C -0.46 -12.08 9.05 -37.74 -0.34 -12.42 16 19 H 0.08 1.98 7.90 -52.49 -0.41 1.57 16 20 C 0.08 1.88 5.16 -17.35 -0.09 1.79 16 21 N -0.79 -20.23 10.94 55.55 0.61 -19.62 16 22 Si 0.91 18.46 29.59 -169.99 -5.03 13.43 16 23 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 C -0.24 -5.76 9.70 -38.67 -0.38 -6.13 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.46 6.43 -51.93 -0.33 0.13 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.82 7.80 -51.92 -0.41 0.42 16 36 H 0.08 0.70 6.43 -51.93 -0.33 0.36 16 37 H 0.41 4.08 7.94 -40.82 -0.32 3.76 16 38 H 0.41 6.94 8.30 -40.82 -0.34 6.60 16 39 H 0.10 2.27 6.46 -52.48 -0.34 1.93 16 40 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 41 H 0.12 3.19 6.17 -52.49 -0.32 2.86 16 42 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 43 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -30.33 365.83 -7.65 -37.97 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.75 Total: 11.69 kcal Atomic # 6 Polarization: -5.72 SS G_CDS: -2.80 Total: -8.52 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.22 Total: -39.80 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.04 Total: -1.91 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.33 -7.65 -37.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595160676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.748 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds