Wall clock time and date at job start Tue Mar 31 2020 13:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47450 * 2 1 4 4 F 1.39898 * 109.47263 * 239.99730 * 2 1 3 5 5 C 1.53004 * 109.47276 * 119.99694 * 2 1 3 6 6 C 1.53001 * 109.47146 * 59.99697 * 5 2 1 7 7 N 1.46499 * 109.47479 * 180.02562 * 6 5 2 8 8 C 1.34774 * 120.00180 * 180.02562 * 7 6 5 9 9 O 1.21364 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.49360 * 119.99903 * 180.02562 * 8 7 6 11 11 O 1.21374 * 119.99668 * 359.97438 * 10 8 7 12 12 N 1.34774 * 119.99903 * 179.97438 * 10 8 7 13 13 C 1.39737 * 120.00151 * 185.10976 * 12 10 8 14 14 C 1.39345 * 119.95280 * 34.20097 * 13 12 10 15 15 C 1.38468 * 120.42730 * 180.02562 * 14 13 12 16 16 C 1.37701 * 120.32582 * 0.27575 * 15 14 13 17 17 C 1.40755 * 119.89228 * 359.49817 * 16 15 14 18 18 C 1.41412 * 120.20094 * 180.25163 * 17 16 15 19 19 H 1.08002 * 119.99578 * 205.30097 * 18 17 16 20 20 C 1.39933 * 120.00171 * 25.30677 * 18 17 16 21 21 N 1.30826 * 120.00058 * 16.70517 * 20 18 17 22 22 Si 1.86800 * 119.99719 * 196.70272 * 20 18 17 23 23 H 1.48508 * 109.47166 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47187 * 120.00164 * 22 20 18 25 25 H 1.48502 * 109.47106 * 239.99936 * 22 20 18 26 26 C 1.38299 * 119.95453 * 214.22787 * 13 12 10 27 27 H 1.08995 * 109.47142 * 299.99939 * 1 2 3 28 28 H 1.08997 * 109.46927 * 60.00636 * 1 2 3 29 29 H 1.09004 * 109.46584 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.47362 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46581 * 300.00123 * 3 2 1 32 32 H 1.09000 * 109.47056 * 59.99182 * 3 2 1 33 33 H 1.09002 * 109.47153 * 300.00621 * 5 2 1 34 34 H 1.08995 * 109.47716 * 180.02562 * 5 2 1 35 35 H 1.09009 * 109.46645 * 60.00213 * 6 5 2 36 36 H 1.09004 * 109.47126 * 300.00605 * 6 5 2 37 37 H 0.97000 * 119.99886 * 359.97438 * 7 6 5 38 38 H 0.96999 * 119.99850 * 5.10924 * 12 10 8 39 39 H 1.08003 * 119.78393 * 0.02562 * 14 13 12 40 40 H 1.07998 * 119.83731 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.04816 * 179.74621 * 16 15 14 42 42 H 0.96998 * 119.99721 * 180.02562 * 21 20 18 43 43 H 1.08002 * 120.16343 * 359.94529 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0401 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2494 7 7 2.0178 -2.8541 2.4459 8 6 1.6925 -4.1445 2.6591 9 8 0.9951 -4.7344 1.8600 10 6 2.1894 -4.8482 3.8792 11 8 2.8866 -4.2580 4.6785 12 7 1.8637 -6.1385 4.0926 13 6 2.2380 -6.7658 5.2838 14 6 2.2737 -6.0384 6.4718 15 6 2.6436 -6.6499 7.6578 16 6 2.9861 -7.9836 7.6749 17 6 2.9502 -8.7324 6.4837 18 6 3.2955 -10.1037 6.4948 19 1 3.6638 -10.5751 5.5956 20 6 3.1600 -10.8499 7.6708 21 7 2.4251 -10.3951 8.6530 22 14 4.0284 -12.4953 7.8382 23 1 4.7904 -12.7815 6.5961 24 1 4.9618 -12.4472 8.9922 25 1 3.0229 -13.5655 8.0592 26 6 2.5731 -8.1075 5.2820 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -0.2074 2.1393 34 1 3.1300 -0.7208 1.2496 35 1 1.8934 -2.6776 0.3594 36 1 0.4400 -2.1637 1.2494 37 1 2.5756 -2.3827 3.0843 38 1 1.3694 -6.6316 3.4193 39 1 2.0110 -4.9908 6.4675 40 1 2.6676 -6.0772 8.5730 41 1 3.2779 -8.4550 8.6017 42 1 2.3315 -10.9122 9.4683 43 1 2.5455 -8.6725 4.3620 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595160676.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:22 Heat of formation + Delta-G solvation = -130.515150 kcal Electronic energy + Delta-G solvation = -25814.621995 eV Core-core repulsion = 21772.700446 eV Total energy + Delta-G solvation = -4041.921549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.66045 -41.99709 -40.25143 -38.90786 -37.49585 -36.35442 -35.20946 -34.75908 -31.80859 -30.77937 -30.18091 -28.41123 -27.25044 -26.40452 -24.14625 -22.96820 -22.55958 -21.59258 -20.96551 -19.78874 -19.32163 -17.99254 -17.41863 -17.30602 -16.98248 -16.82136 -16.63594 -16.41632 -16.19238 -15.86834 -15.80053 -15.11542 -15.07114 -14.65506 -14.57234 -14.09785 -13.92998 -13.57746 -13.32504 -13.26844 -13.18206 -12.91524 -12.88296 -12.83215 -12.82117 -12.55889 -12.48939 -12.24949 -11.92635 -11.68299 -11.59692 -11.56917 -11.22984 -10.90527 -10.66191 -10.39002 -9.44619 -8.84099 -8.64527 -6.37985 0.09690 0.94117 1.00390 1.24782 1.40843 1.51918 1.55884 2.08101 2.22194 2.55904 2.73255 3.29690 3.47982 3.62584 3.69635 3.69830 3.79621 4.11601 4.15509 4.39035 4.47434 4.60175 4.67671 4.76603 4.80877 4.85183 4.88923 4.92002 4.99512 5.04139 5.07287 5.10774 5.20301 5.28841 5.29314 5.30234 5.63239 5.70250 5.89076 6.05359 6.06888 6.22426 6.42720 6.62406 6.68389 6.85191 6.91607 7.00344 8.33249 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.038267 B = 0.001961 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.527995 B =14278.461912 C =14613.066728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.112 3.888 3 C -0.170 4.170 4 F -0.229 7.229 5 C -0.148 4.148 6 C 0.112 3.888 7 N -0.684 5.684 8 C 0.519 3.481 9 O -0.539 6.539 10 C 0.500 3.500 11 O -0.523 6.523 12 N -0.631 5.631 13 C 0.154 3.846 14 C -0.231 4.231 15 C -0.095 4.095 16 C -0.188 4.188 17 C 0.094 3.906 18 C -0.495 4.495 19 H 0.078 0.922 20 C 0.036 3.964 21 N -0.823 5.823 22 Si 0.984 3.016 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.266 1.266 26 C -0.252 4.252 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.082 0.918 37 H 0.422 0.578 38 H 0.422 0.578 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.289 0.711 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 20.049 -12.556 23.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.093 3.907 3 C -0.228 4.228 4 F -0.209 7.209 5 C -0.186 4.186 6 C -0.010 4.010 7 N -0.337 5.337 8 C 0.298 3.702 9 O -0.417 6.417 10 C 0.282 3.718 11 O -0.399 6.399 12 N -0.277 5.277 13 C 0.061 3.939 14 C -0.252 4.252 15 C -0.114 4.114 16 C -0.208 4.208 17 C 0.091 3.909 18 C -0.524 4.524 19 H 0.096 0.904 20 C -0.179 4.179 21 N -0.448 5.448 22 Si 0.804 3.196 23 H -0.182 1.182 24 H -0.189 1.189 25 H -0.190 1.190 26 C -0.274 4.274 27 H 0.114 0.886 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.260 0.740 38 H 0.260 0.740 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.667 20.039 -12.410 23.721 hybrid contribution 0.288 -1.036 0.084 1.078 sum -2.378 19.004 -12.326 22.776 Atomic orbital electron populations 1.22507 0.92655 1.03717 1.04863 1.21084 0.95591 0.92911 0.81093 1.22370 1.02554 0.93054 1.04776 1.92842 1.90581 1.83392 1.54134 1.22419 1.03262 0.93337 0.99554 1.21676 1.00300 0.92802 0.86233 1.45676 1.51863 1.10162 1.26002 1.19737 0.81238 0.83651 0.85544 1.90765 1.37824 1.66598 1.46481 1.20429 0.81209 0.82912 0.87216 1.90759 1.36243 1.65963 1.46958 1.43121 1.54419 1.11325 1.18842 1.17458 0.99793 0.91944 0.84667 1.20471 1.13983 0.99323 0.91459 1.20832 0.98941 0.94639 0.96946 1.21376 1.07178 0.93241 0.99008 1.17753 0.88305 0.93677 0.91182 1.19819 1.40355 0.94562 0.97702 0.90407 1.26755 0.93207 1.03786 0.94196 1.69869 1.29003 1.39924 1.06052 0.85137 0.78720 0.76262 0.79453 1.18240 1.18885 1.19048 1.20881 1.13640 0.93915 0.98929 0.88580 0.90932 0.91873 0.91330 0.91054 0.88576 0.86663 0.89210 0.91717 0.89975 0.73981 0.73972 0.87083 0.86553 0.87487 0.89998 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 8.58 71.98 0.62 -0.99 16 2 C 0.11 1.21 1.37 -10.79 -0.01 1.19 16 3 C -0.17 -1.18 8.93 71.98 0.64 -0.54 16 4 F -0.23 -4.11 16.29 44.97 0.73 -3.38 16 5 C -0.15 -1.48 4.65 30.60 0.14 -1.34 16 6 C 0.11 1.85 5.20 86.38 0.45 2.30 16 7 N -0.68 -13.98 5.55 -464.49 -2.58 -16.56 16 8 C 0.52 14.70 7.89 87.24 0.69 15.39 16 9 O -0.54 -17.33 16.48 -3.29 -0.05 -17.39 16 10 C 0.50 17.12 7.62 87.24 0.66 17.78 16 11 O -0.52 -19.79 14.20 -3.32 -0.05 -19.84 16 12 N -0.63 -23.44 5.32 -304.98 -1.62 -25.06 16 13 C 0.15 6.96 6.25 38.16 0.24 7.20 16 14 C -0.23 -10.69 8.66 22.59 0.20 -10.50 16 15 C -0.09 -4.52 10.02 22.20 0.22 -4.30 16 16 C -0.19 -9.97 8.69 22.76 0.20 -9.78 16 17 C 0.09 5.08 5.57 -21.31 -0.12 4.96 16 18 C -0.50 -26.49 9.05 23.46 0.21 -26.28 16 19 H 0.08 4.02 7.90 -2.91 -0.02 3.99 16 20 C 0.04 1.78 5.16 85.25 0.44 2.22 16 21 N -0.82 -42.52 10.94 21.82 0.24 -42.28 16 22 Si 0.98 37.81 29.59 68.60 2.03 39.84 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 25 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 26 C -0.25 -12.39 9.70 22.86 0.22 -12.17 16 27 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.70 6.43 -2.38 -0.02 0.69 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 1.30 7.80 -2.38 -0.02 1.28 16 36 H 0.08 1.33 6.43 -2.38 -0.02 1.32 16 37 H 0.42 7.33 7.94 -92.71 -0.74 6.59 16 38 H 0.42 13.99 8.30 -92.71 -0.77 13.22 16 39 H 0.11 4.87 6.46 -2.91 -0.02 4.85 16 40 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 41 H 0.11 5.86 6.17 -2.91 -0.02 5.84 16 42 H 0.29 13.42 8.30 -92.71 -0.77 12.65 16 43 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 Total: -1.00 -65.78 365.83 3.05 -62.73 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.45 Total: 36.77 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 4.80 Total: -14.83 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -3.96 Total: -83.90 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: -0.10 Total: -37.23 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.73 Total: -3.38 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -65.78 3.05 -62.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595160676.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.785 kcal (2) G-P(sol) polarization free energy of solvation -65.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds