Wall clock time and date at job start Tue Mar 31 2020 13:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47045 * 2 1 4 4 C 1.33389 * 125.20522 * 89.99913 * 3 2 1 5 5 C 1.38421 * 114.92124 * 179.79225 * 4 3 2 6 6 C 1.33398 * 114.92046 * 0.42657 * 5 4 3 7 7 C 1.50697 * 125.20092 * 179.86344 * 6 5 4 8 8 N 1.46492 * 109.47178 * 89.72033 * 7 6 5 9 9 C 1.34787 * 119.99544 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00101 * 5.07476 * 9 8 7 11 11 N 1.34777 * 119.99394 * 185.07365 * 9 8 7 12 12 C 1.46923 * 120.63455 * 354.96443 * 11 9 8 13 13 C 1.53197 * 108.89200 * 126.46575 * 12 11 9 14 14 C 1.53040 * 109.31348 * 54.56697 * 13 12 11 15 15 C 1.53039 * 109.53657 * 298.63593 * 14 13 12 16 16 H 1.08997 * 109.49768 * 301.37853 * 15 14 13 17 17 C 1.50698 * 109.49846 * 181.31299 * 15 14 13 18 18 H 1.07998 * 119.99944 * 0.02562 * 17 15 14 19 19 C 1.37875 * 120.00338 * 179.97438 * 17 15 14 20 20 N 1.31526 * 119.99760 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00412 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47164 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47290 * 120.00069 * 21 19 17 24 24 H 1.48498 * 109.47502 * 240.00146 * 21 19 17 25 25 C 1.46957 * 120.65280 * 174.78884 * 11 9 8 26 26 S 1.75885 * 125.19962 * 270.02080 * 3 2 1 27 27 H 1.08995 * 109.47441 * 300.00397 * 1 2 3 28 28 H 1.09003 * 109.46493 * 60.00198 * 1 2 3 29 29 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47082 * 239.99869 * 2 1 3 31 31 H 1.09003 * 109.46493 * 119.99802 * 2 1 3 32 32 H 1.07996 * 122.53481 * 0.02562 * 4 3 2 33 33 H 1.07996 * 122.54293 * 180.27221 * 5 4 3 34 34 H 1.09001 * 109.47280 * 329.71391 * 7 6 5 35 35 H 1.09010 * 109.46892 * 209.72332 * 7 6 5 36 36 H 0.96994 * 120.00221 * 0.02562 * 8 7 6 37 37 H 1.09002 * 109.58658 * 6.61372 * 12 11 9 38 38 H 1.08998 * 109.59373 * 246.32692 * 12 11 9 39 39 H 1.09002 * 109.49551 * 174.51567 * 13 12 11 40 40 H 1.08996 * 109.49529 * 294.61341 * 13 12 11 41 41 H 1.09008 * 109.45898 * 58.65120 * 14 13 12 42 42 H 1.08994 * 109.46154 * 178.61390 * 14 13 12 43 43 H 0.96998 * 119.99920 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.46953 * 113.74370 * 25 11 9 45 45 H 1.09001 * 109.71186 * 353.46250 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2887 2.1458 1.0899 5 6 2.7470 3.4284 0.8428 6 6 2.8543 3.7480 -0.4479 7 6 3.3250 5.0781 -0.9772 8 7 4.7795 5.0484 -1.1488 9 6 5.4254 6.1359 -1.6148 10 8 4.8153 7.1701 -1.8052 11 7 6.7475 6.0765 -1.8695 12 6 7.5197 4.8703 -1.5417 13 6 8.2709 4.4067 -2.7938 14 6 9.1130 5.5638 -3.3363 15 6 8.1960 6.7255 -3.7256 16 1 7.4804 6.3887 -4.4756 17 6 9.0231 7.8519 -4.2896 18 1 10.0957 7.7497 -4.3637 19 6 8.4104 9.0126 -4.7121 20 7 7.1042 9.1369 -4.6224 21 14 9.4356 10.4086 -5.4119 22 1 10.8692 10.0214 -5.4054 23 1 9.0052 10.6884 -6.8054 24 1 9.2472 11.6254 -4.5819 25 6 7.4440 7.2153 -2.4841 26 16 2.3698 2.3769 -1.4372 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.1527 1.7600 2.0894 33 1 2.9962 4.1189 1.6349 34 1 3.0583 5.8650 -0.2716 35 1 2.8496 5.2756 -1.9381 36 1 5.2777 4.2461 -0.9278 37 1 6.8436 4.0829 -1.2088 38 1 8.2340 5.0975 -0.7503 39 1 8.9225 3.5710 -2.5385 40 1 7.5542 4.0915 -3.5521 41 1 9.8126 5.8948 -2.5687 42 1 9.6676 5.2294 -4.2130 43 1 6.6731 9.9533 -4.9199 44 1 8.1521 7.6363 -1.7703 45 1 6.7196 7.9771 -2.7725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595449197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:12 Heat of formation + Delta-G solvation = -7.091461 kcal Electronic energy + Delta-G solvation = -24668.364675 eV Core-core repulsion = 21198.008354 eV Total energy + Delta-G solvation = -3470.356320 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.72662 -38.38794 -36.86967 -35.02376 -33.68618 -33.10613 -31.71952 -29.92077 -29.28955 -26.33649 -25.03323 -24.34838 -23.20498 -22.40388 -21.78830 -20.08118 -19.30168 -18.65136 -17.70140 -16.94917 -16.19703 -15.81788 -15.40813 -14.94541 -14.60165 -14.49254 -14.21871 -13.91822 -13.69921 -13.52324 -13.47190 -13.11181 -12.63769 -12.58853 -12.37662 -12.30268 -12.12985 -11.97454 -11.89696 -11.60722 -11.29996 -10.97792 -10.88060 -10.83236 -10.46313 -10.37253 -10.20611 -9.85519 -9.49583 -9.07872 -8.95024 -8.76738 -8.71837 -8.63355 -8.39608 -7.61484 -5.96072 -4.04863 0.70669 1.39107 1.81524 2.46907 3.31127 3.38425 3.41086 3.43849 3.87373 4.39475 4.41991 4.50146 4.59077 4.69822 4.91445 5.08836 5.20481 5.30993 5.34183 5.39737 5.46531 5.49813 5.53311 5.61435 5.63378 5.75244 5.80757 5.99378 6.00684 6.05948 6.18611 6.31613 6.33931 6.61100 6.68767 6.77588 6.83643 7.01343 7.09122 7.37222 7.52484 7.77711 7.95830 8.09302 8.43800 8.60612 8.99011 9.26568 9.60635 11.09167 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.002561 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.100166 B =10929.881069 C =11322.379557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.176 4.176 4 C -0.142 4.142 5 C -0.115 4.115 6 C -0.196 4.196 7 C 0.213 3.787 8 N -0.754 5.754 9 C 0.702 3.298 10 O -0.584 6.584 11 N -0.621 5.621 12 C 0.116 3.884 13 C -0.133 4.133 14 C -0.110 4.110 15 C 0.039 3.961 16 H 0.028 0.972 17 C -0.520 4.520 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.879 5.879 21 Si 0.892 3.108 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.129 3.871 26 S 0.117 5.883 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.392 0.608 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.263 0.737 44 H 0.039 0.961 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 -19.012 11.581 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.293 4.293 4 C -0.172 4.172 5 C -0.147 4.147 6 C -0.314 4.314 7 C 0.086 3.914 8 N -0.415 5.415 9 C 0.404 3.596 10 O -0.461 6.461 11 N -0.358 5.358 12 C -0.009 4.009 13 C -0.172 4.172 14 C -0.147 4.147 15 C 0.020 3.980 16 H 0.046 0.954 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.517 5.517 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C 0.009 3.991 26 S 0.382 5.618 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.155 0.845 33 H 0.159 0.841 34 H 0.101 0.899 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.790 -18.332 9.804 23.422 hybrid contribution 0.871 0.597 1.284 1.662 sum -9.919 -17.735 11.088 23.149 Atomic orbital electron populations 1.21793 0.94285 1.01961 1.02560 1.20105 0.96198 0.89749 1.03226 1.24617 1.07787 1.00822 0.96117 1.20047 1.03718 0.94187 0.99219 1.20166 1.01631 0.96969 0.95928 1.24546 1.10027 1.00162 0.96660 1.19367 0.80471 0.90461 1.01053 1.45394 1.06851 1.16128 1.73111 1.15914 0.82065 0.83258 0.78413 1.90921 1.66295 1.29520 1.59344 1.47782 1.05845 1.17762 1.64403 1.21487 0.94806 0.87140 0.97429 1.21946 0.99224 0.98708 0.97282 1.21614 0.98100 0.95602 0.99425 1.18994 0.93645 0.92355 0.93033 0.95362 1.21108 0.93512 0.99738 1.41500 0.92325 1.25067 0.94919 0.98586 0.95531 1.69909 1.08110 1.27183 1.46475 0.86542 0.80425 0.82321 0.78748 1.19818 1.21052 1.20975 1.22190 0.96585 0.86947 0.93413 1.84454 1.63972 1.04503 1.08856 0.92282 0.92378 0.92059 0.90776 0.90050 0.84470 0.84127 0.89925 0.90880 0.77164 0.92242 0.92139 0.92348 0.92184 0.93189 0.93065 0.92720 0.94290 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.90 37.16 0.37 -0.51 16 2 C -0.05 -0.35 6.43 -27.88 -0.18 -0.53 16 3 C -0.18 -1.56 5.76 -36.00 -0.21 -1.76 16 4 C -0.14 -1.25 10.05 -41.21 -0.41 -1.67 16 5 C -0.12 -1.15 10.05 -41.21 -0.41 -1.57 16 6 C -0.20 -2.23 5.88 -36.00 -0.21 -2.44 16 7 C 0.21 2.97 6.17 -5.20 -0.03 2.93 16 8 N -0.75 -11.85 5.46 -66.42 -0.36 -12.21 16 9 C 0.70 14.69 8.30 -86.91 -0.72 13.97 16 10 O -0.58 -14.85 15.79 5.30 0.08 -14.77 16 11 N -0.62 -12.82 2.98 -178.47 -0.53 -13.35 16 12 C 0.12 1.84 6.43 -3.71 -0.02 1.81 16 13 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 14 C -0.11 -2.20 5.11 -26.69 -0.14 -2.34 16 15 C 0.04 0.97 2.25 -91.65 -0.21 0.77 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.21 8.56 -34.44 -0.29 -14.50 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.99 11.40 55.43 0.63 -25.36 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.13 3.20 5.38 -3.69 -0.02 3.18 16 26 S 0.12 1.22 23.31 -107.50 -2.51 -1.29 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.14 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.39 5.26 5.92 -40.82 -0.24 5.02 16 37 H 0.06 0.77 5.57 -51.93 -0.29 0.48 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.12 3.55 5.17 -51.93 -0.27 3.29 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -32.09 374.26 -11.92 -44.01 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.11 Total: 4.24 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: -2.75 Total: -3.34 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: -0.26 Total: -50.92 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.08 Total: -14.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.51 Total: -1.29 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.09 -11.92 -44.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595449197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.914 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds