Wall clock time and date at job start Tue Mar 31 2020 13:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 109.47045 * 2 1 4 4 C 1.33389 * 125.20522 * 89.99913 * 3 2 1 5 5 C 1.38421 * 114.92124 * 179.79225 * 4 3 2 6 6 C 1.33398 * 114.92046 * 0.42657 * 5 4 3 7 7 C 1.50697 * 125.20092 * 179.86344 * 6 5 4 8 8 N 1.46492 * 109.47178 * 89.72033 * 7 6 5 9 9 C 1.34787 * 119.99544 * 179.97438 * 8 7 6 10 10 O 1.21580 * 120.00101 * 5.07476 * 9 8 7 11 11 N 1.34777 * 119.99394 * 185.07365 * 9 8 7 12 12 C 1.46923 * 120.63455 * 354.96443 * 11 9 8 13 13 C 1.53197 * 108.89200 * 126.46575 * 12 11 9 14 14 C 1.53040 * 109.31348 * 54.56697 * 13 12 11 15 15 C 1.53039 * 109.53657 * 298.63593 * 14 13 12 16 16 H 1.08997 * 109.49768 * 301.37853 * 15 14 13 17 17 C 1.50698 * 109.49846 * 181.31299 * 15 14 13 18 18 H 1.07998 * 119.99944 * 0.02562 * 17 15 14 19 19 C 1.37875 * 120.00338 * 179.97438 * 17 15 14 20 20 N 1.31526 * 119.99760 * 0.02562 * 19 17 15 21 21 Si 1.86797 * 120.00412 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47164 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47290 * 120.00069 * 21 19 17 24 24 H 1.48498 * 109.47502 * 240.00146 * 21 19 17 25 25 C 1.46957 * 120.65280 * 174.78884 * 11 9 8 26 26 S 1.75885 * 125.19962 * 270.02080 * 3 2 1 27 27 H 1.08995 * 109.47441 * 300.00397 * 1 2 3 28 28 H 1.09003 * 109.46493 * 60.00198 * 1 2 3 29 29 H 1.08996 * 109.46924 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47082 * 239.99869 * 2 1 3 31 31 H 1.09003 * 109.46493 * 119.99802 * 2 1 3 32 32 H 1.07996 * 122.53481 * 0.02562 * 4 3 2 33 33 H 1.07996 * 122.54293 * 180.27221 * 5 4 3 34 34 H 1.09001 * 109.47280 * 329.71391 * 7 6 5 35 35 H 1.09010 * 109.46892 * 209.72332 * 7 6 5 36 36 H 0.96994 * 120.00221 * 0.02562 * 8 7 6 37 37 H 1.09002 * 109.58658 * 6.61372 * 12 11 9 38 38 H 1.08998 * 109.59373 * 246.32692 * 12 11 9 39 39 H 1.09002 * 109.49551 * 174.51567 * 13 12 11 40 40 H 1.08996 * 109.49529 * 294.61341 * 13 12 11 41 41 H 1.09008 * 109.45898 * 58.65120 * 14 13 12 42 42 H 1.08994 * 109.46154 * 178.61390 * 14 13 12 43 43 H 0.96998 * 119.99920 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.46953 * 113.74370 * 25 11 9 45 45 H 1.09001 * 109.71186 * 353.46250 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2887 2.1458 1.0899 5 6 2.7470 3.4284 0.8428 6 6 2.8543 3.7480 -0.4479 7 6 3.3250 5.0781 -0.9772 8 7 4.7795 5.0484 -1.1488 9 6 5.4254 6.1359 -1.6148 10 8 4.8153 7.1701 -1.8052 11 7 6.7475 6.0765 -1.8695 12 6 7.5197 4.8703 -1.5417 13 6 8.2709 4.4067 -2.7938 14 6 9.1130 5.5638 -3.3363 15 6 8.1960 6.7255 -3.7256 16 1 7.4804 6.3887 -4.4756 17 6 9.0231 7.8519 -4.2896 18 1 10.0957 7.7497 -4.3637 19 6 8.4104 9.0126 -4.7121 20 7 7.1042 9.1369 -4.6224 21 14 9.4356 10.4086 -5.4119 22 1 10.8692 10.0214 -5.4054 23 1 9.0052 10.6884 -6.8054 24 1 9.2472 11.6254 -4.5819 25 6 7.4440 7.2153 -2.4841 26 16 2.3698 2.3769 -1.4372 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 2.1527 1.7600 2.0894 33 1 2.9962 4.1189 1.6349 34 1 3.0583 5.8650 -0.2716 35 1 2.8496 5.2756 -1.9381 36 1 5.2777 4.2461 -0.9278 37 1 6.8436 4.0829 -1.2088 38 1 8.2340 5.0975 -0.7503 39 1 8.9225 3.5710 -2.5385 40 1 7.5542 4.0915 -3.5521 41 1 9.8126 5.8948 -2.5687 42 1 9.6676 5.2294 -4.2130 43 1 6.6731 9.9533 -4.9199 44 1 8.1521 7.6363 -1.7703 45 1 6.7196 7.9771 -2.7725 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595449197.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:11 Heat of formation + Delta-G solvation = -25.603919 kcal Electronic energy + Delta-G solvation = -24669.167435 eV Core-core repulsion = 21198.008354 eV Total energy + Delta-G solvation = -3471.159081 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32110 -39.23229 -38.46791 -36.22992 -35.29442 -34.33696 -33.38696 -31.57772 -30.41130 -27.39273 -26.88252 -25.75191 -24.18373 -23.44070 -23.06456 -21.75218 -20.58385 -19.81419 -19.11570 -18.29147 -17.81076 -17.27412 -16.64891 -16.39713 -16.20622 -15.40772 -15.28237 -15.20379 -15.00503 -14.88650 -14.60741 -14.41303 -14.28560 -13.85910 -13.66904 -13.54366 -13.25331 -12.96836 -12.90757 -12.77692 -12.63123 -12.29426 -12.26049 -12.20782 -11.90163 -11.86690 -11.63848 -11.52911 -11.27855 -10.96873 -10.84260 -10.52194 -10.23675 -9.53510 -9.44175 -9.27924 -8.09923 -6.27063 -0.08541 0.60346 1.05282 1.40037 1.41689 1.53842 1.61783 1.97957 2.23036 2.42524 3.06042 3.20244 3.60455 3.83938 4.02900 4.13807 4.20514 4.21667 4.27900 4.44073 4.51108 4.57287 4.59873 4.72327 4.73818 4.80312 4.84916 4.86020 5.00522 5.07134 5.10447 5.25341 5.26680 5.27909 5.30626 5.32578 5.37148 5.43121 5.57021 5.59800 5.63663 5.88617 5.96839 6.14790 6.36169 6.86339 7.09061 7.42934 7.63668 8.93755 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026406 B = 0.002561 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.100166 B =10929.881069 C =11322.379557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.055 4.055 3 C -0.161 4.161 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.218 4.218 7 C 0.216 3.784 8 N -0.731 5.731 9 C 0.696 3.304 10 O -0.639 6.639 11 N -0.626 5.626 12 C 0.110 3.890 13 C -0.125 4.125 14 C -0.105 4.105 15 C 0.038 3.962 16 H -0.015 1.015 17 C -0.533 4.533 18 H 0.063 0.937 19 C 0.007 3.993 20 N -0.916 5.916 21 Si 0.959 3.041 22 H -0.259 1.259 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.143 3.857 26 S 0.093 5.907 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.152 0.848 34 H 0.078 0.922 35 H 0.054 0.946 36 H 0.406 0.594 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.259 0.741 44 H 0.034 0.966 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.185 -21.961 13.455 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.279 4.279 4 C -0.177 4.177 5 C -0.133 4.133 6 C -0.335 4.335 7 C 0.091 3.909 8 N -0.391 5.391 9 C 0.397 3.603 10 O -0.520 6.520 11 N -0.362 5.362 12 C -0.012 4.012 13 C -0.163 4.163 14 C -0.142 4.142 15 C 0.018 3.982 16 H 0.003 0.997 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.555 5.555 21 Si 0.784 3.216 22 H -0.183 1.183 23 H -0.209 1.209 24 H -0.209 1.209 25 C 0.020 3.980 26 S 0.358 5.642 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.181 0.819 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.113 0.887 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.053 0.947 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.850 -21.361 11.700 26.272 hybrid contribution 0.525 1.418 0.741 1.683 sum -9.325 -19.944 12.441 25.288 Atomic orbital electron populations 1.21788 0.93796 1.02857 1.02044 1.20243 0.96519 0.88295 1.04359 1.24975 1.06410 1.01577 0.94981 1.20288 1.03513 0.93542 1.00403 1.20405 0.99855 0.97619 0.95450 1.24181 1.12619 0.99341 0.97387 1.19287 0.79061 0.92355 1.00200 1.45185 1.07607 1.14910 1.71416 1.16152 0.82124 0.83673 0.78360 1.90878 1.67526 1.31994 1.61613 1.47683 1.06138 1.18377 1.63991 1.21847 0.95520 0.85918 0.97908 1.21904 0.99128 0.98418 0.96872 1.21504 0.97687 0.95053 0.99974 1.18925 0.93485 0.93825 0.91920 0.99690 1.21547 0.93978 1.00531 1.41126 0.91834 1.25930 0.95857 1.01364 0.96041 1.70113 1.10001 1.27639 1.47729 0.85492 0.79397 0.78953 0.77744 1.18307 1.20911 1.20892 1.21602 0.95319 0.87574 0.93475 1.84553 1.64574 1.04843 1.10245 0.92240 0.93476 0.90513 0.90402 0.88116 0.81920 0.83046 0.90410 0.92730 0.75461 0.88682 0.90094 0.87688 0.93276 0.92295 0.92900 0.93188 0.94739 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.90 71.98 0.71 -0.66 16 2 C -0.05 -0.56 6.43 29.85 0.19 -0.36 16 3 C -0.16 -2.45 5.76 24.59 0.14 -2.31 16 4 C -0.15 -2.16 10.05 21.22 0.21 -1.95 16 5 C -0.10 -1.80 10.05 21.22 0.21 -1.59 16 6 C -0.22 -4.76 5.88 24.59 0.14 -4.61 16 7 C 0.22 6.16 6.17 85.63 0.53 6.69 16 8 N -0.73 -22.81 5.46 -482.30 -2.63 -25.44 16 9 C 0.70 29.93 8.30 179.05 1.49 31.42 16 10 O -0.64 -34.46 15.79 -3.97 -0.06 -34.52 16 11 N -0.63 -26.06 2.98 -836.81 -2.49 -28.56 16 12 C 0.11 3.21 6.43 86.36 0.56 3.77 16 13 C -0.13 -3.73 6.08 30.67 0.19 -3.54 16 14 C -0.10 -4.07 5.11 30.62 0.16 -3.91 16 15 C 0.04 1.95 2.25 -11.46 -0.03 1.92 16 16 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 17 C -0.53 -29.79 8.56 25.60 0.22 -29.57 16 18 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 19 C 0.01 0.42 5.30 84.65 0.45 0.87 16 20 N -0.92 -56.96 11.40 21.45 0.24 -56.71 16 21 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 22 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 25 C 0.14 7.38 5.38 86.36 0.46 7.84 16 26 S 0.09 1.84 23.31 -56.49 -1.32 0.52 16 27 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 34 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.41 10.13 5.92 -92.71 -0.55 9.58 16 37 H 0.10 2.10 5.57 -2.39 -0.01 2.08 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 42 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 44 H 0.03 1.76 8.14 -2.38 -0.02 1.74 16 45 H 0.07 4.64 5.17 -2.39 -0.01 4.62 16 Total: -1.00 -75.13 374.26 1.83 -73.29 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.43 Total: 20.41 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 5.64 Total: 3.99 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -4.88 Total: -110.71 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.06 Total: -34.52 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.32 Total: 0.52 kcal Total: -75.13 1.83 -73.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595449197.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.689 kcal (2) G-P(sol) polarization free energy of solvation -75.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds